├── .gitignore ├── Dockerfile ├── LICENSE ├── MANIFEST.in ├── README.md ├── biser ├── __init__.py ├── __main__.py ├── codon │ ├── __init__.codon │ ├── align.codon │ ├── chain.codon │ ├── cluster.codon │ ├── decompose.codon │ ├── hit.codon │ ├── mask.codon │ └── search.codon ├── cover.py └── version.py ├── paper ├── phylogeny │ ├── group.seq │ ├── npip-hard.txt │ └── plot.ipynb ├── simulations │ ├── compare_cores.py │ ├── plot_simulations.ipynb │ ├── simulate_cores.ipynb │ └── simulations.py └── stats │ ├── analyze.seq │ ├── compare.py │ ├── coverage.seq │ └── hard_mask.seq └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/biser/HEAD/.gitignore -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/biser/HEAD/Dockerfile 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