├── .gitignore ├── LICENSE.md ├── Makefile ├── README.md ├── paper ├── experiments.ipynb └── scripts │ ├── gatk-rnaseq.nf │ ├── merge-wxs.py │ └── stats.py └── src ├── alg.seq ├── files.seq ├── graph.seq ├── main.seq ├── output.seq ├── rates.seq ├── read.seq └── rna.seq /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/LICENSE.md -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/README.md -------------------------------------------------------------------------------- /paper/experiments.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/paper/experiments.ipynb -------------------------------------------------------------------------------- /paper/scripts/gatk-rnaseq.nf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/paper/scripts/gatk-rnaseq.nf -------------------------------------------------------------------------------- /paper/scripts/merge-wxs.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/paper/scripts/merge-wxs.py -------------------------------------------------------------------------------- /paper/scripts/stats.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/paper/scripts/stats.py -------------------------------------------------------------------------------- /src/alg.seq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/src/alg.seq -------------------------------------------------------------------------------- /src/files.seq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/src/files.seq -------------------------------------------------------------------------------- /src/graph.seq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/src/graph.seq -------------------------------------------------------------------------------- /src/main.seq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/src/main.seq -------------------------------------------------------------------------------- /src/output.seq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/src/output.seq -------------------------------------------------------------------------------- /src/rates.seq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/src/rates.seq -------------------------------------------------------------------------------- /src/read.seq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/src/read.seq -------------------------------------------------------------------------------- /src/rna.seq: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/0xTCG/haptreex/HEAD/src/rna.seq --------------------------------------------------------------------------------