├── .gitignore ├── .travis.yml ├── LICENSE ├── README.md ├── Seqotron.xcodeproj ├── project.pbxproj ├── project.xcworkspace │ ├── contents.xcworkspacedata │ └── xcshareddata │ │ ├── Seqotron.xccheckout │ │ └── WorkspaceSettings.xcsettings └── xcshareddata │ └── xcschemes │ └── Seqotron.xcscheme ├── Seqotron ├── Base.lproj │ ├── MFDocument.xib │ └── MainMenu.xib ├── Coloring │ ├── Amino Acid │ │ ├── color-amino-acid.plist │ │ └── monochrome-amino-acid.plist │ └── Nucleotide │ │ ├── black-nucleotide.plist │ │ ├── clustal-nucleotide.plist │ │ ├── color-nucleotide.plist │ │ └── geneious.plist ├── DBPrefsWindowController.h ├── DBPrefsWindowController.m ├── GeneticCodeTables │ ├── Alternative-Flatworm-Mitochondrial.plist │ ├── Alternative-Yeast-Nuclear.plist │ ├── Ascidian-Mitochondrial.plist │ ├── Bacterial,-Archaeal-and-Plant-Plastid.plist │ ├── Candidate-Division-SR1-and-Gracilibacteria.plist │ ├── Chlorophycean-Mitochondrial.plist │ ├── Ciliate,-Dasycladacean-and-Hexamita-Nuclear.plist │ ├── Echinoderm-and-Flatworm-Mitochondrial.plist │ ├── Euplotid-Nuclear.plist │ ├── Invertebrate-Mitochondrial.plist │ ├── Mold,-Protozoan,-and-Coelenterate-Mitochondrial-Code-and-the-Mycoplasma-Spiroplasma.plist │ ├── Pterobranchia-Mitochondrial.plist │ ├── Scenedesmus-obliquus-Mitochondrial.plist │ ├── Standard.plist │ ├── Thraustochytrium-Mitochondrial.plist │ ├── Trematode-Mitochondrial.plist │ ├── Yeast-Mitochondrial.plist │ └── vertebrate-mitochondrial.plist ├── Images.xcassets │ └── AppIcon.appiconset │ │ ├── Contents.json │ │ ├── icon_128x128.png │ │ ├── icon_128x128@2x.png │ │ ├── icon_16x16.png │ │ ├── icon_16x16@2x.png │ │ ├── icon_256x256.png │ │ ├── icon_256x256@2x.png │ │ ├── icon_32x32.png │ │ ├── icon_32x32@2x.png │ │ ├── icon_512x512.png │ │ └── icon_512x512@2x.png ├── MFAbstractSequencesView.h ├── MFAbstractSequencesView.m ├── MFAligner.xib ├── MFAlignerController.h ├── MFAlignerController.m ├── MFAppDelegate.h ├── MFAppDelegate.m ├── MFClustalImporter.h ├── MFClustalImporter.m ├── MFColorManager.h ├── MFColorManager.m ├── MFDataType.h ├── MFDataType.m ├── MFDefines.h ├── MFDistanceMatrix.h ├── MFDistanceMatrix.m ├── MFDistanceMatrixOperation.h ├── MFDistanceMatrixOperation.m ├── MFDistanceMatrixWindow.xib ├── MFDistanceWindowController.h ├── MFDistanceWindowController.m ├── MFDocument.h ├── MFDocument.m ├── MFDocumentController.h ├── MFDocumentController.m ├── MFExternalOperation.h ├── MFExternalOperation.m ├── MFFASTAImporter.h ├── MFFASTAImporter.m ├── MFFileReader.h ├── MFFileReader.m ├── MFGDEImporter.h ├── MFGDEImporter.m ├── MFGraphic.h ├── MFGraphic.m ├── MFJukeCantorDistanceMatrix.h ├── MFJukeCantorDistanceMatrix.m ├── MFK2PDistanceMatrix.h ├── MFK2PDistanceMatrix.m ├── MFK83DistanceMatrix.h ├── MFK83DistanceMatrix.m ├── MFLineGraphic.h ├── MFLineGraphic.m ├── MFMEGAImporter.h ├── MFMEGAImporter.m ├── MFNBRFImporter.h ├── MFNBRFImporter.m ├── MFNamesView.h ├── MFNamesView.m ├── MFNeighborJoining.h ├── MFNeighborJoining.m ├── MFNewickExporter.h ├── MFNewickExporter.m ├── MFNewickImporter.h ├── MFNewickImporter.m ├── MFNexusExporter.h ├── MFNexusExporter.m ├── MFNexusImporter.h ├── MFNexusImporter.m ├── MFNode.h ├── MFNode.m ├── MFNucleotide.h ├── MFNucleotide.m ├── MFOperation.h ├── MFOperation.m ├── MFOperationBuilder.h ├── MFOperationDelegate.h ├── MFOperationTransalign.h ├── MFOperationTransalign.m ├── MFPhylipImporter.h ├── MFPhylipImporter.m ├── MFPrefs.xib ├── MFPrefsWindowController.h ├── MFPrefsWindowController.m ├── MFProgressController.h ├── MFProgressController.m ├── MFProgressWindow.xib ├── MFProtein.h ├── MFProtein.m ├── MFReaderCluster.h ├── MFReaderCluster.m ├── MFRulerView.h ├── MFRulerView.m ├── MFScaleBar.h ├── MFScaleBar.m ├── MFSearchController.h ├── MFSearchController.m ├── MFSearchController.xib ├── MFSequence+MFSequenceDrawing.h ├── MFSequence+MFSequenceDrawing.m ├── MFSequence.h ├── MFSequence.m ├── MFSequenceImporter.h ├── MFSequenceReader.h ├── MFSequenceReader.m ├── MFSequenceSet.h ├── MFSequenceSet.m ├── MFSequenceUtils.h ├── MFSequenceUtils.m ├── MFSequenceWriter.h ├── MFSequenceWriter.m ├── MFSequencesView.h ├── MFSequencesView.m ├── MFSimpleAlignmentView.h ├── MFSimpleAlignmentView.m ├── MFStockholmImporter.h ├── MFStockholmImporter.m ├── MFString.h ├── MFString.m ├── MFStringReader.h ├── MFStringReader.m ├── MFSyncronizedScrollView.h ├── MFSyncronizedScrollView.m ├── MFTextGraphic.h ├── MFTextGraphic.m ├── MFTree.h ├── MFTree.m ├── MFTreeBuilderController.h ├── MFTreeBuilderController.m ├── MFTreeBuilderController.xib ├── MFTreeDocument.h ├── MFTreeDocument.m ├── MFTreeExporter.h ├── MFTreeExporter.m ├── MFTreeImporter.h ├── MFTreeReader.h ├── MFTreeReader.m ├── MFTreeView.h ├── MFTreeView.m ├── MFTreeWindow.xib ├── MFTreeWindowController.h ├── MFTreeWindowController.m ├── MFTreeWriter.h ├── MFTreeWriter.m ├── MFWindowController.h ├── MFWindowController.m ├── NSArray+IndexSetAddition.h ├── NSArray+IndexSetAddition.m ├── NSObject+TDBindings.h ├── NSObject+TDBindings.m ├── Seqotron-Info.plist ├── Seqotron-Prefix.pch ├── bin │ └── .gitkeep ├── en.lproj │ ├── Credits.rtf │ └── InfoPlist.strings └── main.m ├── SeqotronQuicklook ├── SeqotronQuicklook.xcodeproj │ ├── project.pbxproj │ └── project.xcworkspace │ │ ├── contents.xcworkspacedata │ │ └── xcshareddata │ │ └── SeqotronQuicklook.xccheckout └── SeqotronQuicklook │ ├── GeneratePreviewForURL.m │ ├── GenerateThumbnailForURL.c │ ├── Info.plist │ └── main.c ├── SeqotronTests ├── SeqotronTests-Info.plist ├── SeqotronTests.m └── en.lproj │ └── InfoPlist.strings └── packaging.sh /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/4ment/seqotron/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/4ment/seqotron/HEAD/.travis.yml 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