├── .gitattributes ├── .github └── workflows │ ├── greetings.yml │ ├── linting.yml │ ├── python-publish.yml │ └── testing.yml ├── .gitignore ├── .readthedocs.yml ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── MANIFEST.in ├── README.md ├── docs ├── Makefile ├── _static │ ├── IDConnWorkflowH.svg │ └── logo-transparent.png ├── _templates │ ├── class.rst │ ├── function.rst │ └── module.rst ├── api.rst ├── conf.py ├── index.rst ├── logo │ ├── IDConnWorkflowH.svg │ ├── logo-transparent.png │ ├── logo.gif │ └── logo.png ├── make.bat ├── references.bib └── sphinxext │ └── github_link.py ├── examples ├── .ipynb_checkpoints │ ├── brainXbehavior-checkpoint.ipynb │ ├── brainXbehavior_spaghetti-checkpoint.ipynb │ ├── descriptives-imputed-checkpoint.ipynb │ ├── poststats_network_conn-OLD-checkpoint.ipynb │ ├── poststats_network_conn-checkpoint.ipynb │ ├── poststats_nodal_efficiency-checkpoint.ipynb │ └── wais-iv_rescoring-checkpoint.ipynb ├── README.txt ├── brainXbehavior.ipynb ├── brainXbehavior_spaghetti.ipynb ├── connectivity │ ├── .ipynb_checkpoints │ │ └── retr-phys_gt_ctrl-nbs-checkpoint.ipynb │ ├── proto_pipeline.ipynb │ └── retr-phys_gt_ctrl-nbs.ipynb ├── data-wrangling │ ├── .ipynb_checkpoints │ │ └── local_efficiency_task+nonbrain_df-checkpoint.ipynb │ ├── data_wrangling_fd.ipynb │ ├── descriptives.ipynb │ ├── descriptives_imputed.ipynb │ ├── local_efficiency_task+nonbrain_df.ipynb │ ├── pipeline_testing_tasks.ipynb │ └── shen_roi_niftis.ipynb ├── figures │ ├── .ipynb_checkpoints │ │ ├── brain-figures-checkpoint.ipynb │ │ ├── figure3-checkpoint.ipynb │ │ ├── figure4-checkpoint.ipynb │ │ ├── figures-checkpoint.ipynb │ │ ├── network_plotting-checkpoint.ipynb │ │ ├── parcellation-figures-checkpoint.ipynb │ │ └── significant_edges_heatmaps-checkpoint.ipynb │ ├── brain-figures.ipynb │ ├── figure3.ipynb │ ├── figure4.ipynb │ ├── figures!.ipynb │ ├── figures.ipynb │ ├── graphs-for-figures.ipynb │ ├── network_plotting.ipynb │ ├── parcellation-figures.ipynb │ └── significant_edges_heatmaps.ipynb ├── network-analysis │ ├── .ipynb_checkpoints │ │ └── resting-state-graph-theory-nodal-dev-checkpoint.ipynb │ ├── resting-state-graph-theory-nodal-dev.ipynb │ └── triple_network_connectivity.ipynb └── statistics │ ├── .ipynb_checkpoints │ ├── iq_performance-OLSregressions-checkpoint (Katie Bottenhorn's conflicted copy 2020-08-20).ipynb │ ├── iq_performance-OLSregressions-checkpoint.ipynb │ ├── mediation-wrangling-checkpoint.ipynb │ ├── nbs_result-distance-checkpoint.ipynb │ ├── poststats_network_conn-checkpoint (Katie Bottenhorn's conflicted copy 2020-08-20).ipynb │ ├── poststats_network_conn-checkpoint.ipynb │ ├── poststats_network_conn-outdated-checkpoint.ipynb │ └── ttests-anovas-checkpoint.ipynb │ ├── iq_performance-OLSregressions.ipynb │ ├── mediation-wrangling.ipynb │ ├── nbs_result-distance.ipynb │ ├── poststats_network_conn-Copy1.ipynb │ ├── poststats_network_conn-OLD.ipynb │ ├── poststats_network_conn-outdated.ipynb │ ├── poststats_network_conn.ipynb │ ├── poststats_network_conn2.ipynb │ ├── poststats_nodal_efficiency.ipynb │ ├── poststats_triple-network_conn.ipynb │ ├── ttests-anovas (Katie Bottenhorn's conflicted copy 2020-08-20).ipynb │ └── ttests-anovas.ipynb ├── idconn ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-37.pyc │ └── _version.cpython-37.pyc ├── _version.py ├── connectivity.py ├── data.py ├── io.py ├── nbs.py ├── networking.py ├── parser_utils.py ├── pipeline.py ├── tests │ └── test_pipeline.py └── workflows │ ├── nbs_predict-bc.py │ ├── nbs_predict-bc_sensitivity.py │ ├── nbs_predict-e2.py │ ├── nbs_predict-e2_sensitivity.py │ ├── nbs_predict-e2bc_sensitivity.py │ ├── nbs_predict-e2xp4-bc.py │ ├── nbs_predict-e2xp4.py │ ├── nbs_predict-p4.py │ ├── nbs_predict-p4_sensitivity.py │ ├── nbs_predict-p4bc_sensitivity.py │ └── nbs_predict.py ├── pyproject.toml ├── setup.cfg ├── setup.py └── versioneer.py /.gitattributes: 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