├── .DS_Store ├── .gitignore ├── .idea ├── MedicalSeg.iml ├── inspectionProfiles │ ├── Project_Default.xml │ └── profiles_settings.xml ├── misc.xml ├── modules.xml ├── vcs.xml └── workspace.xml ├── LICENSE ├── README.md ├── examples └── brats_unet_框架.py ├── medical_seg ├── .DS_Store ├── __init__.py ├── dataset │ ├── .DS_Store │ ├── __init__.py │ ├── dataset.py │ └── helper.py ├── evaluation │ ├── .DS_Store │ ├── __init__.py │ ├── brats.py │ ├── evaluation.py │ ├── general.py │ └── helper.py ├── inferer │ ├── .DS_Store │ ├── __init__.py │ ├── inferer.py │ └── utils.py ├── loss │ ├── __init__.py │ ├── dice_loss.py │ └── uncertainty_loss.py ├── networks │ ├── .DS_Store │ ├── PatchGAN │ │ ├── __init__.py │ │ └── discriminator.py │ ├── __init__.py │ ├── blocks │ │ ├── .DS_Store │ │ ├── __init__.py │ │ ├── acti_norm.py │ │ ├── aspp.py │ │ ├── convolutions.py │ │ ├── downsample.py │ │ ├── dynunet_block.py │ │ ├── fcn.py │ │ ├── mlp.py │ │ ├── patchembedding.py │ │ ├── segresnet_block.py │ │ ├── selfattention.py │ │ ├── squeeze_and_excitation.py │ │ ├── transformerblock.py │ │ ├── unetr_block.py │ │ └── upsample.py │ ├── layers │ │ ├── .DS_Store │ │ ├── __init__.py │ │ ├── convutils.py │ │ ├── cpc.py │ │ ├── factories.py │ │ ├── fusion_transformer.py │ │ ├── image_transformer.py │ │ ├── multi_attention.py │ │ ├── poolformer.py │ │ ├── poolformer_v2.py │ │ ├── simplelayers.py │ │ ├── temp_save │ │ │ ├── multi_attention copy.py │ │ │ ├── spatial_image_transformer.py │ │ │ └── spatial_transformer_没改好.py │ │ └── transformer.py │ ├── multi_attention_net.py │ ├── multi_attention_net_v2.py │ ├── nets │ │ ├── .DS_Store │ │ ├── MlpMixer │ │ │ └── model.py │ │ ├── MultiResNet.py │ │ ├── TransBTS │ │ │ ├── IntmdSequential.py │ │ │ ├── PositionalEncoding.py │ │ │ ├── TransBTS_downsample8x_skipconnection.py │ │ │ ├── Transformer.py │ │ │ ├── Unet_skipconnection.py │ │ │ └── testBTS_model.py │ │ ├── U2Net.py │ │ ├── __init__.py │ │ ├── attention_unet.py │ │ ├── basic_pool_former.py │ │ ├── basic_unet.py │ │ ├── basic_unet_encoder.py │ │ ├── co_unet.py │ │ ├── deeplabv3 │ │ │ ├── aspp.py │ │ │ ├── deeplabv3.py │ │ │ └── resnet.py │ │ ├── dense_unet.py │ │ ├── densenet.py │ │ ├── fcn.py │ │ ├── hrnet │ │ │ ├── __init__.py │ │ │ ├── hrnet.py │ │ │ ├── hrnet_small.py │ │ │ └── seg_hrnet_w48_train.yaml │ │ ├── kiunet │ │ │ ├── __init__.py │ │ │ └── model.py │ │ ├── msga_net │ │ │ ├── attention.py │ │ │ ├── my_stacked_danet.py │ │ │ ├── resnext.py │ │ │ └── resnext101_regular.py │ │ ├── multiattention_net.py │ │ ├── nested_unet.py │ │ ├── pra_net │ │ │ ├── ResNet.py │ │ │ ├── __init__.py │ │ │ └── pra_net.py │ │ ├── segresnet.py │ │ ├── senet.py │ │ ├── ss_net.py │ │ ├── swin_transformer │ │ │ ├── __init__.py │ │ │ ├── model.py │ │ │ ├── model_2.py │ │ │ ├── model_2_save.py │ │ │ ├── model_patch_conv.py │ │ │ └── swin_trans_test.py │ │ ├── swin_unet │ │ │ ├── .DS_Store │ │ │ ├── config.py │ │ │ ├── model.py │ │ │ ├── swin_tiny_patch4_window7_224_lite.yaml │ │ │ └── swin_transformer_unet_skip_expand_decoder_sys.py │ │ ├── trans_unet │ │ │ ├── __init__.py │ │ │ └── networks │ │ │ │ ├── vit_seg_configs.py │ │ │ │ ├── vit_seg_modeling.py │ │ │ │ └── vit_seg_modeling_resnet_skip.py │ │ ├── transformer.py │ │ ├── unet_transformer.py │ │ ├── unetr.py │ │ ├── unetr_self_att.py │ │ ├── vit.py │ │ └── vnet.py │ ├── self_cross_att_fusion_net.py │ ├── spatial_fusion_net_multi_att.py │ ├── test_model.py │ └── utils.py ├── pretrain │ ├── __init__.py │ └── cutout.py ├── trainer │ ├── __init__.py │ └── trainer.py ├── transformer │ ├── .DS_Store │ ├── __init__.py │ ├── color_transformers.py │ ├── noisy_transformers.py │ ├── resample_transformers.py │ ├── transforms.py │ └── utils.py └── utils │ ├── .DS_Store │ ├── __init__.py │ ├── aliases.py │ ├── decorators.py │ ├── enums.py │ ├── misc.py │ ├── module.py │ ├── seed.py │ └── utils.py ├── run.sh └── test ├── readme.md ├── spacing_resize_h5.py ├── swin_trans_test.py ├── test_brats2020.py ├── test_brats2020_data.py ├── test_crop.py ├── test_data_augment.py ├── test_meni_case.py ├── test_sliding_window.py ├── test_spleen_data.py └── test_transformer_layer.py /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/920232796/MedicalSeg/HEAD/.DS_Store -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/920232796/MedicalSeg/HEAD/.gitignore -------------------------------------------------------------------------------- /.idea/MedicalSeg.iml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/920232796/MedicalSeg/HEAD/.idea/MedicalSeg.iml -------------------------------------------------------------------------------- /.idea/inspectionProfiles/Project_Default.xml: 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