├── .gitignore ├── LICENSE ├── README.md ├── cli ├── build.py ├── infer.py ├── interface.py ├── tabulate.py └── viz.py ├── example ├── example.newick └── example_data │ ├── Boloria_selene.example.tsv │ ├── Brenthis_daphne.example.tsv │ ├── Brenthis_hecate.example.tsv │ ├── Brenthis_ino.example.tsv │ ├── Fabriciana_adippe.example.tsv │ └── Nymphalis_polychloros.example.tsv ├── scripts ├── simulate_synteny_x.py ├── simulate_synteny_x_multi.py ├── simulate_synteny_y.py └── simulate_synteny_y_fixed_tree.py ├── source └── syngraph.py ├── syngraph └── yaml └── syngraph.yaml /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/A-J-F-Mackintosh/syngraph/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/A-J-F-Mackintosh/syngraph/HEAD/LICENSE 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