├── .gitignore ├── API ├── __init__.py ├── cath_dataset.py ├── dataloader.py ├── dataloader_gtrans.py ├── featurizer.py ├── recorder.py ├── ts_dataset.py └── utils.py ├── ReadMe.md ├── assets ├── PiFold_arxiv.pdf ├── acc_speed2.png ├── framework.png ├── results_CATH2.png └── results_TS.png ├── example └── 1o91.pdb1.gz ├── license ├── main.py ├── methods ├── __init__.py ├── base_method.py ├── optim_scheduler.py ├── prodesign.py ├── prodesign_model.py ├── prodesign_module.py └── utils.py ├── parser.py └── utils ├── __init__.py ├── main_utils.py └── simdesign_utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/A4Bio/PiFold/HEAD/.gitignore -------------------------------------------------------------------------------- /API/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/A4Bio/PiFold/HEAD/API/__init__.py 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