├── Data-generation.md ├── Data-pre-processing.md ├── GWAS-analysis.md ├── Introduction.md ├── Post-analytic-visualization-and-genomic-interrogation.md ├── R ├── GWAA.R ├── GWAS_ManhattanFunction.R ├── globals.R └── map2gene.R ├── README.md └── imgs ├── GWAS_Manhattan.png ├── GWAS_qqplot.png ├── HDL-transformation.png ├── LDheatmap.png ├── PCA-plot.png └── regionalplot.png /Data-generation.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/Data-generation.md -------------------------------------------------------------------------------- /Data-pre-processing.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/Data-pre-processing.md -------------------------------------------------------------------------------- /GWAS-analysis.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/GWAS-analysis.md -------------------------------------------------------------------------------- /Introduction.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/Introduction.md -------------------------------------------------------------------------------- /Post-analytic-visualization-and-genomic-interrogation.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/Post-analytic-visualization-and-genomic-interrogation.md -------------------------------------------------------------------------------- /R/GWAA.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/R/GWAA.R -------------------------------------------------------------------------------- /R/GWAS_ManhattanFunction.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/R/GWAS_ManhattanFunction.R -------------------------------------------------------------------------------- /R/globals.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/R/globals.R -------------------------------------------------------------------------------- /R/map2gene.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/R/map2gene.R -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/README.md -------------------------------------------------------------------------------- /imgs/GWAS_Manhattan.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/imgs/GWAS_Manhattan.png -------------------------------------------------------------------------------- /imgs/GWAS_qqplot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/imgs/GWAS_qqplot.png -------------------------------------------------------------------------------- /imgs/HDL-transformation.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/imgs/HDL-transformation.png -------------------------------------------------------------------------------- /imgs/LDheatmap.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/imgs/LDheatmap.png -------------------------------------------------------------------------------- /imgs/PCA-plot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/imgs/PCA-plot.png -------------------------------------------------------------------------------- /imgs/regionalplot.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AAlhendi1707/GWAS/HEAD/imgs/regionalplot.png --------------------------------------------------------------------------------