├── .gitignore ├── COPYING ├── LICENSE-3RD-PARTY ├── README.md ├── base ├── __init__.py ├── base_data_loader.py ├── base_model.py ├── base_trainer.py └── base_transforms.py ├── config ├── csv │ ├── half_crop_noise_test.csv │ ├── half_crop_noise_train.csv │ ├── half_crop_noise_val.csv │ ├── half_crop_test.csv │ ├── half_crop_train.csv │ ├── half_crop_val.csv │ ├── multimodal_test.csv │ ├── multimodal_val.csv │ ├── quarter_crop_noise_test.csv │ ├── quarter_crop_noise_train.csv │ ├── quarter_crop_noise_val.csv │ ├── quarter_crop_test.csv │ ├── quarter_crop_train.csv │ └── quarter_crop_val.csv ├── multimodal_half_noise_quarter.json ├── multimodal_half_noise_quarter_noise.json ├── multimodal_half_quarter.json ├── unimodal_half.json ├── unimodal_half_noise.json ├── unimodal_quarter.json └── unimodal_quarter_noise.json ├── data └── .gitkeep ├── datahandler ├── __init__.py ├── loaders │ ├── __init__.py │ └── multimodal_loader.py ├── sets │ ├── __init__.py │ └── multimodal_set.py └── transforms │ ├── __init__.py │ └── data_transform.py ├── inputs.png ├── logger ├── __init__.py ├── logger.py ├── logger_config.json └── visualization.py ├── model ├── __init__.py ├── layer.py ├── loss.py ├── lr_scheduler.py ├── metric.py ├── model.py └── optimizer.py ├── parse_config.py ├── requirements.txt ├── saved └── .gitkeep ├── test.py ├── train.py ├── trainer ├── __init__.py └── multimodal_trainer.py └── utils ├── __init__.py ├── colormaps.json ├── colormaps.py ├── plot.py └── util.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AGFoersch/MultiStainDeepLearning/HEAD/.gitignore -------------------------------------------------------------------------------- /COPYING: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AGFoersch/MultiStainDeepLearning/HEAD/COPYING -------------------------------------------------------------------------------- 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