├── .gitignore ├── LICENSE ├── Makefile ├── Makefile.am ├── Makefile.in ├── README.md ├── acinclude.m4 ├── aclocal.m4 ├── ar-lib ├── bin ├── config.large ├── config.middle ├── config.tiny ├── config.txt ├── data │ ├── README │ └── seamount65_49_21.nc └── output │ └── README.md ├── compile ├── config.guess ├── config.status ├── config.sub ├── configure ├── configure.ac ├── docs ├── A_simple_user_manual_for_OpenArray_version_1.0.pdf ├── Governing_equations.pdf └── README ├── install-sh ├── lib └── README.md ├── missing ├── pre ├── areas_masks.m ├── dens.m ├── depth.m ├── init_constants.m ├── init_global.m ├── init_values.m ├── init_variables.m ├── ncfile_main.m ├── pre_main.m ├── read_basic_variables.m ├── readme ├── run_preprocess.m ├── seamount.m ├── write_init_variables.m ├── write_netcdf.m └── ztosig.m └── src ├── .dirstamp ├── adjust_ufvf.F90 ├── adjust_uv.F90 ├── advave.F90 ├── advct.F90 ├── advt2.F90 ├── baropg.F90 ├── bcond1.F90 ├── bcond2_ua.F90 ├── bcond2_va.F90 ├── 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