├── .gitignore ├── Makefile.am ├── Makefile.in ├── README.md ├── acinclude.m4 ├── aclocal.m4 ├── ar-lib ├── compile ├── config.guess ├── config.sub ├── configure ├── configure.ac ├── doc └── A_simple_user_Manual_for_OpenArray_Version_1.0.pdf ├── examples └── oa_main.F90 ├── install-sh ├── missing └── src ├── ArgumentParser.cpp ├── ArgumentParser.hpp ├── Array.cpp ├── Array.hpp ├── ArrayPool.hpp ├── Box.cpp ├── Box.hpp ├── CUDA.cpp ├── CUDA.hpp ├── Diagnosis.cpp ├── Diagnosis.hpp ├── Function.cpp ├── Function.hpp ├── GpuKernels.cu ├── GpuKernels.hpp ├── Grid.cpp ├── Grid.hpp ├── IO.cpp ├── IO.hpp ├── Init.cpp ├── Init.hpp ├── Internal.cpp ├── Internal.hpp ├── InternalGpu.cu ├── InternalGpu.hpp ├── Jit.hpp ├── Jit_Driver.hpp ├── Jit_Driver.osx.hpp ├── Kernel.hpp ├── MPI.cpp ├── MPI.hpp ├── Node.cpp ├── Node.hpp ├── NodeDesc.hpp ├── NodePool.hpp ├── Operator.cpp ├── Operator.hpp ├── Partition.cpp ├── Partition.hpp ├── PartitionPool.hpp ├── Range.cpp ├── Range.hpp ├── TreeRootDict.cpp ├── TreeRootDict.hpp ├── armadillo ├── armadillo_bits ├── BaseCube_bones.hpp ├── BaseCube_meat.hpp ├── Base_bones.hpp ├── Base_meat.hpp ├── Col_bones.hpp ├── Col_meat.hpp ├── Cube_bones.hpp ├── Cube_meat.hpp ├── GenCube_bones.hpp ├── GenCube_meat.hpp ├── GenSpecialiser.hpp ├── Gen_bones.hpp ├── Gen_meat.hpp ├── GlueCube_bones.hpp ├── GlueCube_meat.hpp ├── Glue_bones.hpp ├── Glue_meat.hpp ├── MapMat_bones.hpp ├── MapMat_meat.hpp ├── Mat_bones.hpp ├── Mat_meat.hpp ├── OpCube_bones.hpp ├── OpCube_meat.hpp ├── Op_bones.hpp ├── Op_meat.hpp ├── Proxy.hpp ├── ProxyCube.hpp ├── Row_bones.hpp ├── Row_meat.hpp ├── SizeCube_bones.hpp ├── SizeCube_meat.hpp ├── SizeMat_bones.hpp ├── SizeMat_meat.hpp ├── SpBase_bones.hpp ├── SpBase_meat.hpp ├── SpCol_bones.hpp ├── SpCol_meat.hpp ├── SpGlue_bones.hpp ├── SpGlue_meat.hpp ├── SpMat_bones.hpp ├── SpMat_iterators_meat.hpp ├── SpMat_meat.hpp ├── SpOp_bones.hpp ├── SpOp_meat.hpp ├── SpProxy.hpp ├── SpRow_bones.hpp ├── SpRow_meat.hpp ├── SpSubview_bones.hpp ├── SpSubview_iterators_meat.hpp ├── SpSubview_meat.hpp ├── SpValProxy_bones.hpp ├── SpValProxy_meat.hpp ├── access.hpp ├── arma_cmath.hpp ├── arma_config.hpp ├── arma_forward.hpp ├── arma_ostream_bones.hpp ├── arma_ostream_meat.hpp ├── arma_rng.hpp ├── arma_rng_cxx11.hpp ├── arma_rng_cxx98.hpp ├── arma_static_check.hpp ├── arma_str.hpp ├── arma_version.hpp ├── arrayops_bones.hpp ├── arrayops_meat.hpp ├── auxlib_bones.hpp ├── auxlib_meat.hpp ├── compiler_extra.hpp ├── compiler_setup.hpp ├── compiler_setup_post.hpp ├── cond_rel_bones.hpp ├── cond_rel_meat.hpp ├── config.hpp ├── config.hpp.cmake ├── constants.hpp ├── constants_old.hpp ├── debug.hpp ├── def_arpack.hpp ├── def_atlas.hpp ├── def_blas.hpp ├── def_hdf5.hpp ├── def_lapack.hpp ├── def_superlu.hpp ├── diagmat_proxy.hpp ├── diagview_bones.hpp ├── diagview_meat.hpp ├── diskio_bones.hpp ├── diskio_meat.hpp ├── distr_param.hpp ├── eGlueCube_bones.hpp ├── eGlueCube_meat.hpp ├── eGlue_bones.hpp ├── eGlue_meat.hpp ├── eOpCube_bones.hpp ├── eOpCube_meat.hpp ├── eOp_bones.hpp ├── eOp_meat.hpp ├── eglue_core_bones.hpp ├── eglue_core_meat.hpp ├── eop_aux.hpp ├── eop_core_bones.hpp ├── eop_core_meat.hpp ├── fft_engine.hpp ├── field_bones.hpp ├── field_meat.hpp ├── fn_accu.hpp ├── fn_all.hpp ├── fn_any.hpp ├── fn_approx_equal.hpp ├── fn_as_scalar.hpp ├── fn_chol.hpp ├── fn_clamp.hpp ├── fn_cond.hpp ├── fn_conv.hpp ├── fn_conv_to.hpp ├── fn_cor.hpp ├── fn_cov.hpp ├── fn_cross.hpp ├── fn_cumprod.hpp ├── fn_cumsum.hpp ├── fn_det.hpp ├── fn_diagmat.hpp ├── fn_diagvec.hpp ├── fn_diff.hpp ├── fn_dot.hpp ├── fn_eig_gen.hpp ├── fn_eig_pair.hpp ├── fn_eig_sym.hpp ├── fn_eigs_gen.hpp ├── fn_eigs_sym.hpp ├── fn_elem.hpp ├── fn_eps.hpp ├── fn_expmat.hpp ├── fn_eye.hpp ├── fn_fft.hpp ├── fn_fft2.hpp ├── fn_find.hpp ├── fn_find_unique.hpp ├── fn_flip.hpp ├── fn_hist.hpp ├── fn_histc.hpp ├── fn_index_max.hpp ├── fn_index_min.hpp ├── fn_inplace_strans.hpp ├── fn_inplace_trans.hpp ├── fn_interp1.hpp ├── fn_intersect.hpp ├── fn_inv.hpp ├── fn_join.hpp ├── fn_kmeans.hpp ├── fn_kron.hpp ├── fn_log_det.hpp ├── fn_logmat.hpp ├── fn_lu.hpp ├── fn_max.hpp ├── fn_mean.hpp ├── fn_median.hpp ├── fn_min.hpp ├── fn_misc.hpp ├── fn_n_unique.hpp ├── fn_nonzeros.hpp ├── fn_norm.hpp ├── fn_normalise.hpp ├── fn_numel.hpp ├── fn_ones.hpp ├── fn_orth_null.hpp ├── fn_pinv.hpp ├── fn_polyfit.hpp ├── fn_polyval.hpp ├── fn_princomp.hpp ├── fn_prod.hpp ├── fn_qr.hpp ├── fn_qz.hpp ├── fn_randg.hpp ├── fn_randi.hpp ├── fn_randn.hpp ├── fn_randu.hpp ├── fn_range.hpp ├── fn_rank.hpp ├── fn_regspace.hpp ├── fn_repmat.hpp ├── fn_reshape.hpp ├── fn_resize.hpp ├── fn_schur.hpp ├── fn_shift.hpp ├── fn_shuffle.hpp ├── fn_size.hpp ├── fn_solve.hpp ├── fn_sort.hpp ├── fn_sort_index.hpp ├── fn_speye.hpp ├── fn_spones.hpp ├── fn_sprandn.hpp ├── fn_sprandu.hpp ├── fn_spsolve.hpp ├── fn_sqrtmat.hpp ├── fn_stddev.hpp ├── fn_strans.hpp ├── fn_sum.hpp ├── fn_svd.hpp ├── fn_svds.hpp ├── fn_syl_lyap.hpp ├── fn_symmat.hpp ├── fn_toeplitz.hpp ├── fn_trace.hpp ├── fn_trans.hpp ├── fn_trapz.hpp ├── fn_trig.hpp ├── fn_trimat.hpp ├── fn_trunc_exp.hpp ├── fn_trunc_log.hpp ├── fn_unique.hpp ├── fn_var.hpp ├── fn_vectorise.hpp ├── fn_zeros.hpp ├── glue_affmul_bones.hpp ├── glue_affmul_meat.hpp ├── glue_atan2_bones.hpp ├── glue_atan2_meat.hpp ├── glue_conv_bones.hpp ├── glue_conv_meat.hpp ├── glue_cor_bones.hpp ├── glue_cor_meat.hpp ├── glue_cov_bones.hpp ├── glue_cov_meat.hpp ├── glue_cross_bones.hpp ├── glue_cross_meat.hpp ├── glue_hist_bones.hpp ├── glue_hist_meat.hpp ├── glue_histc_bones.hpp ├── glue_histc_meat.hpp ├── glue_hypot_bones.hpp ├── glue_hypot_meat.hpp ├── glue_intersect_bones.hpp ├── glue_intersect_meat.hpp ├── glue_join_bones.hpp ├── glue_join_meat.hpp ├── glue_kron_bones.hpp ├── glue_kron_meat.hpp ├── glue_max_bones.hpp ├── glue_max_meat.hpp ├── glue_min_bones.hpp ├── glue_min_meat.hpp ├── glue_mixed_bones.hpp ├── glue_mixed_meat.hpp ├── glue_polyfit_bones.hpp ├── glue_polyfit_meat.hpp ├── glue_polyval_bones.hpp ├── glue_polyval_meat.hpp ├── glue_relational_bones.hpp ├── glue_relational_meat.hpp ├── glue_solve_bones.hpp ├── glue_solve_meat.hpp ├── glue_times_bones.hpp ├── glue_times_meat.hpp ├── glue_toeplitz_bones.hpp ├── glue_toeplitz_meat.hpp ├── glue_trapz_bones.hpp ├── glue_trapz_meat.hpp ├── gmm_diag_bones.hpp ├── gmm_diag_meat.hpp ├── gmm_full_bones.hpp ├── gmm_full_meat.hpp ├── gmm_misc_bones.hpp ├── gmm_misc_meat.hpp ├── hdf5_misc.hpp ├── include_atlas.hpp ├── include_hdf5.hpp ├── include_superlu.hpp ├── injector_bones.hpp ├── injector_meat.hpp ├── memory.hpp ├── mp_misc.hpp ├── mtGlueCube_bones.hpp ├── mtGlueCube_meat.hpp ├── mtGlue_bones.hpp ├── mtGlue_meat.hpp ├── mtOpCube_bones.hpp ├── mtOpCube_meat.hpp ├── mtOp_bones.hpp ├── mtOp_meat.hpp ├── mtSpOp_bones.hpp ├── mtSpOp_meat.hpp ├── mul_gemm.hpp ├── mul_gemm_mixed.hpp ├── mul_gemv.hpp ├── mul_herk.hpp ├── mul_syrk.hpp ├── newarp_DenseGenMatProd_bones.hpp ├── newarp_DenseGenMatProd_meat.hpp ├── newarp_DoubleShiftQR_bones.hpp ├── newarp_DoubleShiftQR_meat.hpp ├── newarp_EigsSelect.hpp ├── newarp_GenEigsSolver_bones.hpp ├── newarp_GenEigsSolver_meat.hpp ├── newarp_SortEigenvalue.hpp ├── newarp_SparseGenMatProd_bones.hpp ├── newarp_SparseGenMatProd_meat.hpp ├── newarp_SymEigsSolver_bones.hpp ├── newarp_SymEigsSolver_meat.hpp ├── newarp_TridiagEigen_bones.hpp ├── newarp_TridiagEigen_meat.hpp ├── newarp_UpperHessenbergEigen_bones.hpp ├── newarp_UpperHessenbergEigen_meat.hpp ├── newarp_UpperHessenbergQR_bones.hpp ├── newarp_UpperHessenbergQR_meat.hpp ├── newarp_cx_attrib.hpp ├── op_all_bones.hpp ├── op_all_meat.hpp ├── op_any_bones.hpp ├── op_any_meat.hpp ├── op_chol_bones.hpp ├── op_chol_meat.hpp ├── op_clamp_bones.hpp ├── op_clamp_meat.hpp ├── op_cor_bones.hpp ├── op_cor_meat.hpp ├── op_cov_bones.hpp ├── op_cov_meat.hpp ├── op_cumprod_bones.hpp ├── op_cumprod_meat.hpp ├── op_cumsum_bones.hpp ├── op_cumsum_meat.hpp ├── op_cx_scalar_bones.hpp ├── op_cx_scalar_meat.hpp ├── op_diagmat_bones.hpp ├── op_diagmat_meat.hpp ├── op_diagvec_bones.hpp ├── op_diagvec_meat.hpp ├── op_diff_bones.hpp ├── op_diff_meat.hpp ├── op_dot_bones.hpp ├── op_dot_meat.hpp ├── op_dotext_bones.hpp ├── op_dotext_meat.hpp ├── op_expmat_bones.hpp ├── op_expmat_meat.hpp ├── op_fft_bones.hpp ├── op_fft_meat.hpp ├── op_find_bones.hpp ├── op_find_meat.hpp ├── op_find_unique_bones.hpp ├── op_find_unique_meat.hpp ├── op_flip_bones.hpp ├── op_flip_meat.hpp ├── op_hist_bones.hpp ├── op_hist_meat.hpp ├── op_htrans_bones.hpp ├── op_htrans_meat.hpp ├── op_index_max_bones.hpp ├── op_index_max_meat.hpp ├── op_index_min_bones.hpp ├── op_index_min_meat.hpp ├── op_inv_bones.hpp ├── op_inv_meat.hpp ├── op_logmat_bones.hpp ├── op_logmat_meat.hpp ├── op_max_bones.hpp ├── op_max_meat.hpp ├── op_mean_bones.hpp ├── op_mean_meat.hpp ├── op_median_bones.hpp ├── op_median_meat.hpp ├── op_min_bones.hpp ├── op_min_meat.hpp ├── op_misc_bones.hpp ├── op_misc_meat.hpp ├── op_nonzeros_bones.hpp ├── op_nonzeros_meat.hpp ├── op_norm_bones.hpp ├── op_norm_meat.hpp ├── op_normalise_bones.hpp ├── op_normalise_meat.hpp ├── op_orth_null_bones.hpp ├── op_orth_null_meat.hpp ├── op_pinv_bones.hpp ├── op_pinv_meat.hpp ├── op_princomp_bones.hpp ├── op_princomp_meat.hpp ├── op_prod_bones.hpp ├── op_prod_meat.hpp ├── op_range_bones.hpp ├── op_range_meat.hpp ├── op_relational_bones.hpp ├── op_relational_meat.hpp ├── op_repmat_bones.hpp ├── op_repmat_meat.hpp ├── op_reshape_bones.hpp ├── op_reshape_meat.hpp ├── op_resize_bones.hpp ├── op_resize_meat.hpp ├── op_shift_bones.hpp ├── op_shift_meat.hpp ├── op_shuffle_bones.hpp ├── op_shuffle_meat.hpp ├── op_sort_bones.hpp ├── op_sort_index_bones.hpp ├── op_sort_index_meat.hpp ├── op_sort_meat.hpp ├── op_sqrtmat_bones.hpp ├── op_sqrtmat_meat.hpp ├── op_stddev_bones.hpp ├── op_stddev_meat.hpp ├── op_strans_bones.hpp ├── op_strans_meat.hpp ├── op_sum_bones.hpp ├── op_sum_meat.hpp ├── op_symmat_bones.hpp ├── op_symmat_meat.hpp ├── op_toeplitz_bones.hpp ├── op_toeplitz_meat.hpp ├── op_trimat_bones.hpp ├── op_trimat_meat.hpp ├── op_unique_bones.hpp ├── op_unique_meat.hpp ├── op_var_bones.hpp ├── op_var_meat.hpp ├── op_vectorise_bones.hpp ├── op_vectorise_meat.hpp ├── operator_cube_div.hpp ├── operator_cube_minus.hpp ├── operator_cube_plus.hpp ├── operator_cube_relational.hpp ├── operator_cube_schur.hpp ├── operator_cube_times.hpp ├── operator_div.hpp ├── operator_minus.hpp ├── operator_ostream.hpp ├── operator_plus.hpp ├── operator_relational.hpp ├── operator_schur.hpp ├── operator_times.hpp ├── podarray_bones.hpp ├── podarray_meat.hpp ├── promote_type.hpp ├── restrictors.hpp ├── running_stat_bones.hpp ├── running_stat_meat.hpp ├── running_stat_vec_bones.hpp ├── running_stat_vec_meat.hpp ├── sp_auxlib_bones.hpp ├── sp_auxlib_meat.hpp ├── span.hpp ├── spdiagview_bones.hpp ├── spdiagview_meat.hpp ├── spglue_join_bones.hpp ├── spglue_join_meat.hpp ├── spglue_minus_bones.hpp ├── spglue_minus_meat.hpp ├── spglue_plus_bones.hpp ├── spglue_plus_meat.hpp ├── spglue_times_bones.hpp ├── spglue_times_meat.hpp ├── spop_diagmat_bones.hpp ├── spop_diagmat_meat.hpp ├── spop_htrans_bones.hpp ├── spop_htrans_meat.hpp ├── spop_max_bones.hpp ├── spop_max_meat.hpp ├── spop_mean_bones.hpp ├── spop_mean_meat.hpp ├── spop_min_bones.hpp ├── spop_min_meat.hpp ├── spop_misc_bones.hpp ├── spop_misc_meat.hpp ├── spop_strans_bones.hpp ├── spop_strans_meat.hpp ├── spop_sum_bones.hpp ├── spop_sum_meat.hpp ├── spop_symmat_bones.hpp ├── spop_symmat_meat.hpp ├── spop_trimat_bones.hpp ├── spop_trimat_meat.hpp ├── spop_var_bones.hpp ├── spop_var_meat.hpp ├── strip.hpp ├── subview_bones.hpp ├── subview_cube_bones.hpp ├── subview_cube_each_bones.hpp ├── subview_cube_each_meat.hpp ├── subview_cube_meat.hpp ├── subview_each_bones.hpp ├── subview_each_meat.hpp ├── subview_elem1_bones.hpp ├── subview_elem1_meat.hpp ├── subview_elem2_bones.hpp ├── subview_elem2_meat.hpp ├── subview_field_bones.hpp ├── subview_field_meat.hpp ├── subview_meat.hpp ├── traits.hpp ├── typedef_elem.hpp ├── typedef_elem_check.hpp ├── typedef_mat.hpp ├── typedef_mat_fixed.hpp ├── unwrap.hpp ├── unwrap_cube.hpp ├── unwrap_spmat.hpp ├── upgrade_val.hpp ├── wall_clock_bones.hpp ├── wall_clock_meat.hpp ├── wrapper_arpack.hpp ├── wrapper_atlas.hpp ├── wrapper_blas.hpp ├── wrapper_lapack.hpp ├── wrapper_superlu.hpp ├── xtrans_mat_bones.hpp ├── xtrans_mat_meat.hpp ├── xvec_htrans_bones.hpp └── xvec_htrans_meat.hpp ├── c-interface ├── c_oa_cache.cpp ├── c_oa_cache.hpp ├── c_oa_debug.cpp ├── c_oa_grid.cpp ├── c_oa_init.cpp ├── c_oa_io.cpp ├── c_oa_option.cpp ├── c_oa_partition.cpp ├── c_oa_set.cpp ├── c_oa_set_with_mask.cpp ├── c_oa_type.cpp ├── c_oa_type.hpp ├── c_oa_utils.cpp ├── c_simple_type.cpp └── c_simple_type.hpp ├── cache.cpp ├── cache.hpp ├── common.cpp ├── common.hpp ├── except.hpp ├── fortran ├── config.h ├── oa_cache.F90 ├── oa_init.F90 ├── oa_interpolation.F90 ├── oa_io.F90 ├── oa_mat_mult.F90 ├── oa_min_max.F90 ├── oa_mod.F90 ├── oa_mpi.F90 ├── oa_option.F90 ├── oa_partition.F90 ├── oa_rep.F90 ├── oa_set.F90 ├── oa_set_with_mask.F90 ├── oa_shift.F90 ├── oa_sub.F90 ├── oa_sum.F90 ├── oa_type.F90 └── oa_utils.F90 ├── log.cpp ├── log.hpp ├── modules ├── basic │ ├── c_new_node.cpp │ ├── c_new_node_simple.cpp │ ├── internal.hpp │ ├── kernel.cpp │ ├── kernel.hpp │ ├── new_node.cpp │ └── new_node.hpp ├── interpolation │ ├── kernel.cpp │ ├── kernel.hpp │ ├── new_node.cpp │ └── new_node.hpp ├── mat_mult │ ├── kernel.cpp │ ├── kernel.hpp │ ├── new_node.cpp │ └── new_node.hpp ├── min_max │ ├── internal.hpp │ ├── internalGpu.cu │ ├── internalGpu.hpp │ ├── kernel.cpp │ ├── kernel.hpp │ ├── new_node.cpp │ ├── new_node.hpp │ └── new_node_simple.cpp ├── operator │ ├── c_new_node.cpp │ ├── c_simple_node.cpp │ ├── internal.hpp │ ├── kernel.cpp │ ├── kernel.hpp │ ├── new_node.cpp │ └── new_node.hpp ├── rep │ ├── kernel.cpp │ ├── kernel.hpp │ ├── new_node.cpp │ ├── new_node.hpp │ └── new_node_simple.cpp ├── set │ ├── kernel.cpp │ ├── kernel.hpp │ ├── new_node.cpp │ └── new_node.hpp ├── shift │ ├── c_new_node.cpp │ ├── kernel.cpp │ ├── kernel.hpp │ ├── new_node.cpp │ ├── new_node.hpp │ └── new_node_simple.cpp ├── sub │ ├── c_new_node.cpp │ ├── internal.hpp │ ├── kernel.cpp │ ├── kernel.hpp │ ├── new_node.cpp │ ├── new_node.hpp │ └── new_node_simple.cpp ├── sum │ ├── c_new_node.cpp │ ├── internal.hpp │ ├── internalGpu.cu │ ├── internalGpu.hpp │ ├── kernel.cpp │ ├── kernel.hpp │ ├── new_node.cpp │ ├── new_node.hpp │ └── new_node_simple.cpp └── tree_tool │ ├── NodeVec.cpp │ ├── NodeVec.hpp │ ├── Simple_Node.cpp │ ├── Simple_Node.hpp │ ├── kernel.hpp │ ├── new_node.hpp │ └── oa_vector.hpp ├── op_define.hpp ├── otype.hpp ├── scalapack ├── pblas.h ├── pdmatgen.f ├── pdpblasdriver.f ├── pdpblasinfo.f └── pmatgeninc.f └── utils ├── calcTime.cpp ├── calcTime.hpp ├── gettimeofday.cpp ├── gettimeofday.h ├── utils.cpp └── utils.hpp /.gitignore: -------------------------------------------------------------------------------- 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