├── .DS_Store ├── .drone.yml ├── .env.example ├── .github ├── CODEOWNERS ├── FUNDING.yml ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md ├── labeler.yml ├── pull_request_template.md └── workflows │ ├── autoblack.yml │ ├── codeql-analysis.yml │ ├── label.yml │ └── tests.yml ├── .gitignore ├── .readthedocs.yml ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── banner.png ├── doc ├── .DS_Store ├── Makefile ├── administration │ └── index.rst ├── attributes_and_protocols │ ├── attributes.rst │ ├── consent.rst │ ├── img │ │ ├── attributes_and_prtocols_dropdown.png │ │ └── consent │ │ │ ├── new_consent_form_question_form.png │ │ │ ├── new_question_button.png │ │ │ ├── new_template_button.png │ │ │ ├── panel.png │ │ │ ├── submission_form.png │ │ │ └── view.png │ └── index.rst ├── conf.py ├── deployment │ ├── external.rst │ ├── img │ │ └── setup │ │ │ └── step_one.png │ └── setup.rst ├── document │ ├── .DS_Store │ ├── img │ │ ├── document_button.PNG │ │ ├── document_portal.PNG │ │ ├── document_portal_add_button.PNG │ │ ├── new_document_complete.PNG │ │ ├── new_document_form.PNG │ │ ├── new_file_page.png │ │ └── upload_file_button.png │ ├── index.rst │ ├── new.rst │ └── upload.rst ├── donor │ ├── index.rst │ └── registration.rst ├── img │ └── logo.svg ├── index.rst ├── make.bat ├── sample │ ├── img │ │ ├── column_vis.PNG │ │ ├── index.PNG │ │ ├── registration │ │ │ ├── add_button.PNG │ │ │ ├── final_sample.jpeg │ │ │ ├── sample_data_entry.drawio │ │ │ ├── sample_data_entry.png │ │ │ ├── step_one.jpeg │ │ │ ├── step_three.jpeg │ │ │ └── step_two.jpeg │ │ └── sample_table_search.PNG │ ├── index.rst │ ├── portal.rst │ └── registration.rst ├── storage │ └── index.rst └── support │ ├── faq.rst │ └── index.rst ├── docker-compose.prod.yml ├── docker-compose.staging.yml ├── docker-compose.traefik.yml ├── docker-compose.yml ├── helpers.sh ├── screenshot.jpeg ├── screenshot2.jpeg ├── screenshot3.jpeg ├── screenshot4.jpeg └── services ├── .DS_Store ├── __init__.py └── web ├── .DS_Store ├── .yarnrc ├── Dockerfile ├── __init__.py ├── alembic.ini ├── app ├── .DS_Store ├── FormEnum.py ├── __init__.py ├── admin │ ├── __init__.py │ ├── api.py │ ├── enums.py │ ├── forms │ │ ├── __init__.py │ │ ├── audit.py │ │ ├── auth.py │ │ └── sites.py │ ├── routes │ │ ├── __init__.py │ │ ├── audit.py │ │ ├── auth.py │ │ ├── index.py │ │ └── sites.py │ └── views.py ├── api │ ├── __init__.py │ ├── filters.py │ ├── generics.py │ └── responses.py ├── attribute │ ├── __init__.py │ ├── api.py │ ├── enums.py │ ├── forms.py │ ├── models.py │ ├── routes.py │ └── views.py ├── auth │ ├── __init__.py │ ├── api.py │ ├── enums.py │ ├── forms.py │ ├── models.py │ ├── routes.py │ └── views.py ├── base.py ├── commands │ ├── __init__.py │ └── setup.py ├── consent │ ├── __init__.py │ ├── api.py │ ├── enums.py │ ├── forms.py │ ├── models.py │ ├── routes.py │ └── views.py ├── database.py ├── decorators.py ├── disease │ ├── api.py │ └── owl.py ├── document │ ├── __init__.py │ ├── api.py │ ├── encryption.py │ ├── enums.py │ ├── forms.py │ ├── models.py │ ├── routes.py │ ├── utils.py │ └── views.py ├── donor │ ├── __init__.py │ ├── api │ │ ├── __init__.py │ │ ├── base.py │ │ └── queries.py │ ├── enums.py │ ├── forms.py │ ├── models.py │ ├── routes.py │ └── views │ │ ├── __init__.py │ │ ├── diagnosis.py │ │ └── donor.py ├── errors │ └── __init__.py ├── event │ ├── __init__.py │ ├── models.py │ ├── routes.py │ └── views.py ├── extensions │ └── __init__.py ├── generators.py ├── labels │ ├── __init__.py │ └── routes.py ├── misc │ ├── __init__.py │ ├── api.py │ ├── models.py │ ├── routes.py │ ├── types.py │ └── views.py ├── mixins.py ├── procedure │ ├── __init__.py │ ├── api │ │ ├── __init__.py │ │ ├── pclass.py │ │ ├── procedure.py │ │ ├── subvolume.py │ │ ├── tree.py │ │ └── volume.py │ ├── forms.py │ ├── models.py │ ├── routes.py │ └── views │ │ ├── __init__.py │ │ ├── pclass.py │ │ ├── procedure.py │ │ ├── subvolume.py │ │ ├── tree.py │ │ └── volume.py ├── protocol │ ├── __init__.py │ ├── api.py │ ├── enums.py │ ├── forms.py │ ├── models.py │ ├── routes.py │ └── views.py ├── sample │ ├── __init__.py │ ├── api │ │ ├── __init__.py │ │ ├── aliquot.py │ │ ├── attribute.py │ │ ├── base.py │ │ ├── consent.py │ │ ├── disposal.py │ │ ├── document.py │ │ ├── protocol.py │ │ ├── queries.py │ │ ├── review.py │ │ └── shipment.py │ ├── enums.py │ ├── forms │ │ ├── __init__.py │ │ ├── add.py │ │ ├── disposal.py │ │ ├── document.py │ │ ├── filter.py │ │ ├── new │ │ │ ├── __init__.py │ │ │ ├── one.py │ │ │ ├── three.py │ │ │ └── two.py │ │ ├── protocol.py │ │ ├── review.py │ │ └── shipment.py │ ├── models │ │ ├── __init__.py │ │ ├── attribute.py │ │ ├── base.py │ │ ├── consent.py │ │ ├── document.py │ │ ├── protocol.py │ │ ├── review.py │ │ ├── shipment.py │ │ └── types.py │ ├── routes │ │ ├── __init__.py │ │ ├── add.py │ │ ├── aliquot.py │ │ ├── attribute.py │ │ ├── dispose.py │ │ ├── protocol.py │ │ ├── review.py │ │ ├── sample.py │ │ └── shipment.py │ └── views │ │ ├── __init__.py │ │ ├── attribue.py │ │ ├── consent.py │ │ ├── disposal.py │ │ ├── document.py │ │ ├── filter.py │ │ ├── protocol.py │ │ ├── review.py │ │ ├── sample.py │ │ ├── shipment.py │ │ ├── storage.py │ │ └── type.py ├── setup │ ├── __init__.py │ ├── forms.py │ └── views.py ├── static │ ├── css │ │ ├── admin │ │ │ └── style.css │ │ ├── auth │ │ │ └── login.css │ │ ├── global.css │ │ ├── select.dataTables.min.css │ │ └── storage │ │ │ └── navbar.css │ ├── images │ │ ├── header.JPG │ │ ├── laptop.png │ │ ├── logos │ │ │ ├── aber.svg │ │ │ ├── hduhb.svg │ │ │ ├── limbus │ │ │ │ ├── limbus-logo-alt.svg │ │ │ │ ├── limbus-logo-light.svg │ │ │ │ ├── limbus-logo-light2.svg │ │ │ │ └── limbus-logo.svg │ │ │ ├── limbus_logo.svg │ │ │ ├── limbus_logo_1000px.png │ │ │ ├── limbus_logo_250px.png │ │ │ ├── limbus_logo_500px.png │ │ │ └── limbus_logo_50px.png │ │ ├── misc │ │ │ ├── kryten.png │ │ │ └── team │ │ │ │ ├── anthony.jpg │ │ │ │ ├── chuan.jpg │ │ │ │ ├── keiron.JPG │ │ │ │ ├── luis.jpg │ │ │ │ ├── priya.jpg │ │ │ │ └── rob.jpg │ │ ├── phone.png │ │ └── storage │ │ │ └── cryobox │ │ │ └── new │ │ │ └── from_file │ │ │ ├── save_as.png │ │ │ └── save_dropdown.png │ └── js │ │ ├── admin │ │ ├── audit.js │ │ ├── auth │ │ │ └── index.js │ │ └── sites │ │ │ └── index.js │ │ ├── all.js │ │ ├── attribute │ │ ├── add │ │ │ ├── numeric.js │ │ │ └── option.js │ │ ├── index.js │ │ └── view.js │ │ ├── auth │ │ ├── adapt_template.js │ │ └── token.js │ │ ├── chart.js │ │ ├── consent │ │ ├── index.js │ │ └── view.js │ │ ├── document │ │ ├── index.js │ │ └── view.js │ │ ├── donor │ │ ├── diagnosis │ │ │ └── assign.js │ │ ├── donor_add.js │ │ ├── donor_consent.js │ │ ├── donor_consent_questionnaire.js │ │ ├── index.js │ │ ├── new_sample_step_one.js │ │ └── view.js │ │ ├── misc │ │ └── panel.js │ │ ├── patientconsentform │ │ └── add │ │ │ └── two.js │ │ ├── procedure │ │ ├── index.js │ │ ├── new.js │ │ └── view.js │ │ ├── protocol │ │ ├── index.js │ │ └── view.js │ │ ├── sample │ │ ├── aliquot │ │ │ ├── create.js │ │ │ └── derive.js │ │ ├── delete.js │ │ ├── disposal │ │ │ ├── check.js │ │ │ ├── disposal_cart.js │ │ │ └── review_disposal.js │ │ ├── information │ │ │ ├── add │ │ │ │ ├── consent.js │ │ │ │ ├── protocolevent.js │ │ │ │ ├── protocolevent_edit.js │ │ │ │ ├── step_five.js │ │ │ │ ├── step_four.js │ │ │ │ ├── step_one.js │ │ │ │ ├── step_six.js │ │ │ │ ├── step_three.js │ │ │ │ └── step_two.js │ │ │ └── index.js │ │ ├── shipment │ │ │ ├── cart.js │ │ │ ├── index.js │ │ │ ├── new.js │ │ │ └── view.js │ │ └── view.js │ │ └── storage │ │ ├── delete.js │ │ ├── lts │ │ └── view.js │ │ ├── navtree.js │ │ ├── panel.js │ │ ├── rack │ │ ├── index.js │ │ ├── rack_checks.js │ │ ├── rack_edit.js │ │ ├── rack_view.js │ │ ├── sampletorack_view.js │ │ └── view.js │ │ ├── shelf │ │ └── view.js │ │ └── site │ │ └── view.js ├── storage │ ├── __init__.py │ ├── api │ │ ├── __init__.py │ │ ├── building.py │ │ ├── lts.py │ │ ├── misc.py │ │ ├── rack.py │ │ ├── room.py │ │ ├── shelf.py │ │ └── site.py │ ├── enums.py │ ├── forms │ │ ├── __init__.py │ │ ├── building.py │ │ ├── lts.py │ │ ├── rack.py │ │ ├── room.py │ │ └── shelf.py │ ├── models │ │ ├── __init__.py │ │ ├── building.py │ │ ├── lts.py │ │ ├── rack.py │ │ ├── room.py │ │ └── shelf.py │ ├── routes │ │ ├── __init__.py │ │ ├── building.py │ │ ├── lts.py │ │ ├── misc.py │ │ ├── rack.py │ │ ├── room.py │ │ ├── shelf.py │ │ └── site.py │ └── views │ │ ├── __init__.py │ │ ├── building.py │ │ ├── lts.py │ │ ├── misc.py │ │ ├── rack.py │ │ ├── room.py │ │ ├── shelf.py │ │ └── site.py ├── templates │ ├── .DS_Store │ ├── admin │ │ ├── audit │ │ │ └── index.html │ │ ├── auth │ │ │ ├── edit.html │ │ │ ├── email │ │ │ │ └── password_reset.html │ │ │ ├── forget_password.html │ │ │ ├── index.html │ │ │ ├── new.html │ │ │ ├── password_reset.html │ │ │ └── view.html │ │ ├── index.html │ │ └── sites │ │ │ ├── index.html │ │ │ └── new.html │ ├── attribute │ │ ├── edit.html │ │ ├── index.html │ │ ├── lock_option.html │ │ ├── new.html │ │ ├── new │ │ │ ├── additional.html │ │ │ └── option.html │ │ ├── remove_option.html │ │ └── view.html │ ├── auth │ │ ├── edit.html │ │ ├── login.html │ │ ├── password.html │ │ ├── password_reset.html │ │ ├── profile.html │ │ └── token.html │ ├── consent │ │ ├── edit_question.html │ │ ├── edit_template.html │ │ ├── index.html │ │ ├── new_question.html │ │ ├── new_template.html │ │ ├── view.html │ │ └── view_question.html │ ├── document │ │ ├── edit.html │ │ ├── file │ │ │ └── remove.html │ │ ├── index.html │ │ ├── upload │ │ │ ├── index.html │ │ │ └── upload.html │ │ └── view.html │ ├── donor │ │ ├── add.html │ │ ├── consent │ │ │ ├── donor_consent_answers.html │ │ │ ├── new_consent.html │ │ │ └── withdraw_consent.html │ │ ├── diagnosis │ │ │ └── assign.html │ │ ├── edit.html │ │ ├── index.html │ │ ├── sample │ │ │ ├── associate.html │ │ │ ├── new_sample_step_one.html │ │ │ └── new_sample_step_three.html │ │ └── view.html │ ├── error.html │ ├── macros.html │ ├── misc │ │ ├── index.html │ │ ├── license.html │ │ ├── panel.html │ │ ├── privacy.html │ │ └── team.html │ ├── procedure │ │ ├── index.html │ │ ├── new │ │ │ ├── class.html │ │ │ ├── procedure.html │ │ │ ├── subvolume.html │ │ │ └── volume.html │ │ └── view.html │ ├── protocol │ │ ├── document_association.html │ │ ├── edit.html │ │ ├── index.html │ │ ├── new.html │ │ ├── new_text.html │ │ ├── remove.html │ │ └── view.html │ ├── sample │ │ ├── .DS_Store │ │ ├── add │ │ │ ├── pick.html │ │ │ ├── review.html │ │ │ ├── step_four.html │ │ │ ├── step_one.html │ │ │ ├── step_three.html │ │ │ ├── step_two.html │ │ │ └── step_zero.html │ │ ├── aliquot │ │ │ ├── create.html │ │ │ └── derive.html │ │ ├── associate │ │ │ └── document.html │ │ ├── attribute │ │ │ ├── form.html │ │ │ └── select.html │ │ ├── deep_remove.html │ │ ├── disposal │ │ │ ├── batch_dispose.html │ │ │ └── new.html │ │ ├── edit.html │ │ ├── index.html │ │ ├── misc │ │ │ └── biohazards.html │ │ ├── protocol │ │ │ ├── edit.html │ │ │ └── new.html │ │ ├── review │ │ │ ├── batch_review.html │ │ │ ├── edit.html │ │ │ └── review.html │ │ ├── shallow_remove.html │ │ ├── shipment │ │ │ ├── .DS_Store │ │ │ ├── cart.html │ │ │ ├── index.html │ │ │ ├── new │ │ │ │ └── new.html │ │ │ ├── update_status.html │ │ │ ├── user_cart.html │ │ │ └── view.html │ │ └── view.html │ ├── setup │ │ ├── admin_registration.html │ │ ├── complete.html │ │ ├── contact_information.html │ │ ├── eula.html │ │ ├── index.html │ │ └── site_registration.html │ ├── storage │ │ ├── building │ │ │ ├── edit.html │ │ │ ├── new.html │ │ │ └── view.html │ │ ├── history.html │ │ ├── index.html │ │ ├── lts │ │ │ ├── associate │ │ │ │ └── document.html │ │ │ ├── edit.html │ │ │ ├── new.html │ │ │ ├── servicing │ │ │ │ └── new.html │ │ │ └── view.html │ │ ├── rack │ │ │ ├── edit.html │ │ │ ├── index.html │ │ │ ├── new │ │ │ │ ├── from_file │ │ │ │ │ ├── step_one.html │ │ │ │ │ └── step_two.html │ │ │ │ ├── manual │ │ │ │ │ └── new.html │ │ │ │ └── option.html │ │ │ ├── sample_to_rack.html │ │ │ ├── sample_to_rack_from_file.html │ │ │ ├── sample_to_rack_pos.html │ │ │ ├── update_rack_sample_info_from_file.html │ │ │ ├── view.html │ │ │ └── view_sample_to_rack.html │ │ ├── room │ │ │ ├── edit.html │ │ │ ├── new.html │ │ │ └── view.html │ │ ├── shelf │ │ │ ├── edit.html │ │ │ ├── new.html │ │ │ ├── rack_to_shelf.html │ │ │ ├── sample_to_shelf.html │ │ │ └── view.html │ │ └── site │ │ │ ├── edit.html │ │ │ ├── edit_addresses.html │ │ │ ├── index.html │ │ │ ├── new.html │ │ │ └── view.html │ ├── template.html │ └── tmpstore │ │ ├── index.html │ │ └── view.html ├── tmpstore │ ├── __init__.py │ ├── api.py │ ├── enums.py │ ├── models.py │ ├── routes.py │ └── views.py ├── validators.py └── webarg_parser.py ├── config.py ├── documents └── README.md ├── dumpdb.py ├── instance └── config.py ├── migrations ├── env.py └── script.py.mako ├── ontologies └── README.md ├── package.json ├── requirements.txt ├── run.py ├── 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