├── .Rbuildignore ├── .github ├── ISSUE_TEMPLATE │ └── bug_report.md └── workflows │ └── main.yml ├── .gitignore ├── .travis.yml ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── DESCRIPTION ├── NAMESPACE ├── NEWS.md ├── R ├── AAATransition-class.R ├── Coords-class.R ├── Summary-methods.R ├── Transition-extract-replace.R ├── Transition-methods.R ├── Transition-slots.R ├── accCost.R ├── adjacencyFromTransition.R ├── coerce.R ├── commuteDistance.R ├── costDistance.R ├── gdistance.R ├── genDist.R ├── geoCorrection.R ├── internal-functions.R ├── normalize.R ├── pathInc.R ├── probPassage.R ├── rSPdistance.R ├── rasterFromTransition.R ├── shortestPath.R ├── show.R ├── stack.R ├── sumT.R ├── summary.R └── transition.R ├── README.md ├── codecov.yml ├── codemeta.json ├── cran-comments.md ├── data ├── genDist.RData └── popCoord.RData ├── docs ├── 404.html ├── CODE_OF_CONDUCT.html ├── CONTRIBUTING.html ├── apple-touch-icon-120x120.png ├── apple-touch-icon-152x152.png ├── apple-touch-icon-180x180.png ├── apple-touch-icon-60x60.png ├── apple-touch-icon-76x76.png ├── apple-touch-icon.png ├── articles │ ├── Overview.html │ ├── Overview_files │ │ ├── accessible-code-block-0.0.1 │ │ │ └── empty-anchor.js │ │ ├── figure-html │ │ │ ├── fig0-1.png │ │ │ ├── fig10-1.png │ │ │ ├── fig8-1.png │ │ │ ├── figure1-1.png │ │ │ ├── figure3-1.png │ │ │ ├── figure4-1.png │ │ │ ├── figure5-1.png │ │ │ ├── figure6-1.png │ │ │ ├── figure7-1.png │ │ │ └── gdistance-8-1.png │ │ ├── header-attrs-2.1 │ │ │ └── header-attrs.js │ │ ├── header-attrs-2.11 │ │ │ └── header-attrs.js │ │ └── header-attrs-2.3 │ │ │ └── header-attrs.js │ ├── index.html │ └── logo.png ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── favicon-16x16.png ├── favicon-32x32.png ├── favicon.ico ├── index.html ├── link.svg ├── logo.svg ├── news │ └── index.html ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml ├── reference │ ├── ArithMath-methods.html │ ├── Coords-class.html │ ├── Rplot001.png │ ├── Rplot002.png │ ├── Rplot003.png │ ├── Rplot004.png │ ├── Summary-methods.html │ ├── Transition-classes.html │ ├── Transition-extract-replace.html │ ├── Transition-slots.html │ ├── accCost-1.png │ ├── accCost.html │ ├── adjacencyFromTransition.html │ ├── commuteDistance-methods.html │ ├── costDistance-methods.html │ ├── figures │ │ ├── logo.png │ │ └── logo.svg │ ├── gdistance.html │ ├── genDist.html │ ├── geoCorrection.html │ ├── index.html │ ├── normalize.html │ ├── overlap.html │ ├── passage-1.png │ ├── passage-2.png │ ├── passage-3.png │ ├── passage-4.png │ ├── passage.html │ ├── pathInc.html │ ├── rSPDistance.html │ ├── rasterFromTransition.html │ ├── shortestPath-1.png │ ├── shortestPath-2.png │ ├── shortestPath.html │ ├── sumReciprocal.html │ └── transition.html └── sitemap.xml ├── gdistance.Rproj ├── inst ├── CITATION ├── external │ ├── Europe.grd │ ├── Europe.gri │ ├── maungawhau.grd │ └── maungawhau.gri └── paper │ ├── gdistance1.Rnw │ ├── gdistance1.bib │ └── jsslogo.jpg ├── man ├── ArithMath-methods.Rd ├── Coords-class.Rd ├── Summary-methods.Rd ├── Transition-classes.Rd ├── Transition-extract-replace.Rd ├── Transition-slots.Rd ├── accCost.Rd ├── adjacencyFromTransition.Rd ├── commuteDistance-methods.Rd ├── costDistance-methods.Rd ├── figures │ ├── logo.png │ └── logo.svg ├── gdistance.Rd ├── genDist.Rd ├── geoCorrection.Rd ├── normalize.Rd ├── overlap.Rd ├── passage.Rd ├── pathInc.Rd ├── rSPDistance.Rd ├── rasterFromTransition.Rd ├── shortestPath.Rd ├── sumReciprocal.Rd └── transition.Rd ├── pkgdown └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ └── favicon.ico ├── tests ├── testthat.R └── testthat │ ├── helper-data.R │ ├── test-accCost.R │ └── test-transition.R └── vignettes ├── Overview.R ├── Overview.Rmd ├── Overview.md ├── 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