├── .cmake ├── altar_cdm.cmake ├── altar_emhp.cmake ├── altar_framework.cmake ├── altar_gaussian.cmake ├── altar_init.cmake ├── altar_linear.cmake ├── altar_mogi.cmake └── altar_reverso.cmake ├── .gitignore ├── .mm ├── altar.def ├── altar.mm ├── cdm.def ├── emhp.def ├── gaussian.def ├── linear.def ├── mogi.def └── reverso.def ├── .vscode ├── c_cpp_properties.json ├── launch.json └── settings.json ├── ACKNOWLEDGMENTS ├── CMakeLists.txt ├── COPYRIGHT ├── LICENSE ├── altar ├── CMakeLists.txt ├── altar │ ├── __init__.py │ ├── actions │ │ ├── About.py │ │ ├── Sample.py │ │ └── __init__.py │ ├── bayesian │ │ ├── Annealer.py │ │ ├── AnnealingMethod.py │ │ ├── Brent.py │ │ ├── COV.py │ │ ├── CUDAAnnealing.py │ │ ├── Controller.py │ │ ├── CoolingStep.py │ │ ├── Grid.py │ │ ├── MPIAnnealing.py │ │ ├── Metropolis.py │ │ ├── Notifier.py │ │ ├── Profiler.py │ │ ├── Sampler.py │ │ ├── Scheduler.py │ │ ├── SequentialAnnealing.py │ │ ├── Solver.py │ │ ├── ThreadedAnnealing.py │ │ └── __init__.py │ ├── distributions │ │ ├── Base.py │ │ ├── Distribution.py │ │ ├── Gaussian.py │ │ ├── Uniform.py │ │ ├── UnitGaussian.py │ │ └── __init__.py │ ├── ext │ │ └── __init__.py │ ├── meta.py.in │ ├── models │ │ ├── Bayesian.py │ │ ├── Contiguous.py │ │ ├── Ensemble.py │ │ ├── Model.py │ │ ├── Null.py │ │ ├── ParameterSet.py │ │ └── __init__.py │ ├── norms │ │ ├── L2.py │ │ ├── Norm.py │ │ └── __init__.py │ ├── shells │ │ ├── Action.py │ │ ├── AlTar.py │ │ ├── Application.py │ │ └── __init__.py │ └── simulations │ │ ├── Archiver.py │ │ ├── Dispatcher.py │ │ ├── GSLRNG.py │ │ ├── Job.py │ │ ├── Monitor.py │ │ ├── RNG.py │ │ ├── Recorder.py │ │ ├── Reporter.py │ │ ├── Run.py │ │ └── __init__.py ├── bin │ └── altar ├── doc │ └── overview │ │ ├── Make.mm │ │ ├── config │ │ ├── meta.tex │ │ ├── pyre.sty │ │ └── setup.tex │ │ ├── diagrams │ │ └── components.graffle │ │ ├── figures │ │ ├── application-altar.pdf │ │ ├── application-class.pdf │ │ ├── application-controller.pdf │ │ ├── application-job.pdf │ │ ├── application-model-override.pdf │ │ ├── application-model.pdf │ │ ├── application-pedigree.pdf │ │ ├── application-pyre.pdf │ │ ├── application-rng.pdf │ │ ├── application-shell.pdf │ │ └── pyre-logo.pdf │ │ ├── overview.tex │ │ └── sections │ │ ├── components.tex │ │ ├── references.bib │ │ ├── references.tex │ │ └── splash.tex ├── examples │ └── altar.pfg ├── ext │ ├── altar.cc │ ├── capsules.h │ ├── dbeta.cc │ ├── dbeta.h │ ├── exceptions.cc │ ├── exceptions.h │ ├── metadata.cc │ └── metadata.h ├── lib │ └── libaltar │ │ └── bayesian │ │ ├── COV.cc │ │ ├── COV.h │ │ ├── COV.icc │ │ ├── CoolingStep.cc │ │ ├── CoolingStep.h │ │ └── CoolingStep.icc └── tests │ └── altar │ ├── annealer.py │ ├── annealer_instance.py │ ├── application.py │ ├── application_instance.py │ ├── application_run.py │ └── sanity.py └── models ├── cdm ├── CMakeLists.txt ├── bin │ └── cdm ├── cdm │ ├── CDM.py │ ├── CUDA.py │ ├── Data.py │ ├── Fast.py │ ├── Native.py │ ├── Source.py │ ├── __init__.py │ ├── ext │ │ └── __init__.py │ ├── libcdm.py │ └── meta.py.in ├── examples │ ├── cdm.pfg │ ├── localhost │ └── synthetic │ │ └── cdm.py ├── ext │ ├── cdm │ │ ├── capsules.h │ │ ├── cdm.cc │ │ ├── exceptions.cc │ │ ├── exceptions.h │ │ ├── metadata.cc │ │ ├── metadata.h │ │ ├── source.cc │ │ └── source.h │ └── cudacdm │ │ ├── capsules.h │ │ ├── cudacdm.cc │ │ ├── exceptions.cc │ │ ├── exceptions.h │ │ ├── metadata.cc │ │ ├── metadata.h │ │ ├── source.cc │ │ └── source.h ├── lib │ ├── libcdm │ │ ├── Source.cc │ │ ├── Source.h │ │ ├── Source.icc │ │ ├── cdm.cc │ │ ├── cdm.h │ │ ├── version.cc │ │ └── version.h │ └── libcudacdm │ │ ├── Source.cc │ │ ├── Source.h │ │ ├── Source.icc │ │ ├── displacements.cu │ │ ├── residuals.cu │ │ ├── version.cc │ │ └── version.h └── tests │ ├── libcdm.py │ └── sanity.py ├── emhp ├── CMakeLists.txt ├── bin │ └── emhp ├── emhp │ ├── EMHP.py │ ├── __init__.py │ └── meta.py.in └── examples │ └── emhp.pfg ├── gaussian ├── CMakeLists.txt ├── bin │ └── gaussian ├── examples │ └── gaussian.pfg └── gaussian │ ├── Gaussian.py │ ├── __init__.py │ ├── ext │ └── __init__.py │ └── meta.py.in ├── linear ├── CMakeLists.txt ├── bin │ └── linear ├── examples │ ├── linear.pfg │ ├── patch-144 │ │ ├── cd.txt │ │ ├── data.txt │ │ └── green.txt │ └── patch-9 │ │ ├── cd.txt │ │ ├── data.txt │ │ └── green.txt └── linear │ ├── Linear.py │ ├── __init__.py │ └── meta.py.in ├── mogi ├── CMakeLists.txt ├── bin │ └── mogi ├── examples │ ├── mogi.pfg │ └── synthetic │ │ └── mogi.py ├── ext │ ├── cudamogi │ │ ├── capsules.h │ │ ├── cudamogi.cc │ │ ├── exceptions.cc │ │ ├── exceptions.h │ │ ├── metadata.cc │ │ ├── metadata.h │ │ ├── source.cc │ │ └── source.h │ └── mogi │ │ ├── capsules.h │ │ ├── exceptions.cc │ │ ├── exceptions.h │ │ ├── metadata.cc │ │ ├── metadata.h │ │ ├── mogi.cc │ │ ├── source.cc │ │ └── source.h ├── lib │ ├── libcudamogi │ │ ├── Source.cc │ │ ├── Source.h │ │ ├── Source.icc │ │ ├── displacements.cu │ │ ├── residuals.cu │ │ ├── version.cc │ │ └── 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