├── .idea ├── dictionaries │ └── alextisyoung.xml ├── libraries │ └── R_User_Library.xml └── misc.xml ├── LICENSE ├── MANIFEST.in ├── README.md ├── bin ├── fit_hlmm_model.py └── hlmm_chr.py ├── docs ├── Makefile ├── conf.py ├── fit_hlmm_model.rst ├── hetlm.rst ├── hetlmm.rst ├── hlmm_chr.rst ├── index.rst ├── intro.rst ├── requirements.txt └── tutorial.rst ├── examples ├── estimate_dispersion_effects.R ├── phenotype_simulation.R ├── plot_results.R ├── simulate_genotypes.sh └── test.sim ├── hlmm ├── __init__.py ├── hetlm.py └── hetlmm.py ├── linear_heteroskedastic_mixed_model.pyc ├── setup.cfg ├── setup.py └── tests ├── test_hetlm.py └── test_hetlmm.py /.idea/dictionaries/alextisyoung.xml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AlexTISYoung/hlmm/HEAD/.idea/dictionaries/alextisyoung.xml -------------------------------------------------------------------------------- /.idea/libraries/R_User_Library.xml: 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