├── .appveyor.yml ├── .github ├── ISSUE_TEMPLATE │ └── propose-updates-to-manuscript.md ├── PULL_REQUEST_TEMPLATE.md └── workflows │ └── manubot.yaml ├── .gitignore ├── CONTRIBUTING.md ├── LICENSE-CC0.md ├── LICENSE.md ├── README.md ├── SETUP.md ├── USAGE.md ├── ci ├── .gitignore ├── README.md ├── deploy.sh ├── install-spellcheck.sh └── install.sh ├── content ├── 00.front-matter.md ├── 01.summary.md ├── 02.introduction.md ├── 03.results.md ├── 04.discussion.md ├── 05.limitations.md ├── 06.administrative.md ├── 07.methods.md ├── 08.supplemental.md ├── 90.back-matter.md ├── images │ ├── github.png │ ├── github.svg │ ├── graphical-abstract.png │ ├── main │ │ ├── Figure2.png │ │ ├── Figure3.png │ │ ├── Figure4.png │ │ └── Figure5.png │ ├── orcid.png │ ├── orcid.svg │ ├── supplement │ │ ├── Figure-S1.png │ │ ├── Figure-S2.png │ │ ├── Figure-S3.png │ │ ├── Figure-S4.png │ │ ├── Figure-S5.png │ │ └── Figure-S6.png │ ├── twitter.png │ └── twitter.svg ├── manual-references.json └── metadata.yaml ├── output └── README.md ├── setup.bash ├── submission_info └── author_information.tsv └── webpage ├── README.md ├── images ├── index.html └── manuscript.pdf /.appveyor.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AlexsLemonade/OpenPBTA-manuscript/HEAD/.appveyor.yml -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/propose-updates-to-manuscript.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AlexsLemonade/OpenPBTA-manuscript/HEAD/.github/ISSUE_TEMPLATE/propose-updates-to-manuscript.md -------------------------------------------------------------------------------- /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- 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