├── .editorconfig ├── .gitattributes ├── .gitchangelog.rc ├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md ├── PULL_REQUEST_TEMPLATE.md └── workflows │ ├── build-docs.yml │ ├── build-main.yml │ ├── maintain-stale.yml │ ├── test-and-lint.yml │ └── test-upstreams.yml ├── .gitignore ├── .gitmodules ├── .pre-commit-config.yaml ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── aicsimageio ├── __init__.py ├── aics_image.py ├── constants.py ├── dimensions.py ├── exceptions.py ├── formats.py ├── image_container.py ├── metadata │ ├── README.md │ ├── __init__.py │ └── utils.py ├── py.typed ├── readers │ ├── __init__.py │ ├── array_like_reader.py │ ├── bfio_reader.py │ ├── bioformats_reader.py │ ├── czi_reader.py │ ├── default_reader.py │ ├── dv_reader.py │ ├── lif_reader.py │ ├── nd2_reader.py │ ├── ome_tiff_reader.py │ ├── ome_zarr_reader.py │ ├── reader.py │ ├── sldy_reader │ │ ├── __init__.py │ │ └── sldy_image.py │ ├── tiff_glob_reader.py │ └── tiff_reader.py ├── tests │ ├── __init__.py │ ├── conftest.py │ ├── image_container_test_utils.py │ ├── metadata │ │ └── __init__.py │ ├── readers │ │ ├── __init__.py │ │ ├── extra_readers │ │ │ ├── __init__.py │ │ │ ├── sldy_reader │ │ │ │ ├── __init__.py │ │ │ │ ├── test_sldy_image.py │ │ │ │ └── test_sldy_reader.py │ │ │ ├── test_bioformats_reader.py │ │ │ ├── test_czi_reader.py │ │ │ ├── test_default_reader.py │ │ │ ├── test_dv_reader.py │ │ │ ├── test_lif_reader.py │ │ │ ├── test_nd2_reader.py │ │ │ ├── test_ome_tiled_tiff_reader.py │ │ │ └── test_ome_zarr_reader.py │ │ ├── test_array_like_reader.py │ │ ├── test_glob_reader.py │ │ ├── test_ome_tiff_reader.py │ │ └── test_tiff_reader.py │ ├── test_aics_image.py │ ├── test_dimensions.py │ ├── test_transforms.py │ ├── utils │ │ ├── __init__.py │ │ └── test_io_utils.py │ └── writers │ │ ├── __init__.py │ │ ├── extra_writers │ │ ├── __init__.py │ │ ├── test_timeseries_writer.py │ │ └── test_two_d_writer.py │ │ ├── test_ome_tiff_writer.py │ │ └── test_ome_zarr_writer.py ├── transforms.py ├── types.py ├── utils │ ├── __init__.py │ └── io_utils.py └── writers │ ├── __init__.py │ ├── ome_tiff_writer.py │ ├── ome_zarr_writer.py │ ├── timeseries_writer.py │ ├── two_d_writer.py │ └── writer.py ├── asv.conf.json ├── benchmarks ├── __init__.py ├── benchmark_chunk_sizes.py ├── benchmark_image_containers.py └── benchmark_lib.py ├── codecov.yml ├── cookiecutter.yaml ├── docs ├── CHANGELOG.rst ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── GOVERNANCE.md ├── INSTALLATION.rst ├── MISSION_AND_VALUES.md ├── Makefile ├── ROADMAP.md ├── _fix_internal_links.py ├── conf.py ├── developer_resources.rst ├── index.rst ├── make.bat └── modules.rst ├── presentations └── 2021-dask-life-sciences │ ├── environment.yml │ └── presentation.ipynb ├── scripts ├── TEST_RESOURCES_HASH.txt ├── download_test_resources.py ├── makezarr.ipynb └── upload_test_resources.py ├── setup.cfg ├── setup.py └── tox.ini /.editorconfig: 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