├── .gitignore ├── DUNet-retinal-vessel-detection ├── README.md ├── __pycache__ │ ├── loaddata.cpython-36.pyc │ └── models.cpython-36.pyc ├── cut_patches.py ├── data │ ├── CHASE │ │ ├── test │ │ │ ├── 1st_manual │ │ │ │ ├── Image_11L_1stHO.png │ │ │ │ ├── Image_11R_1stHO.png │ │ │ │ ├── Image_12L_1stHO.png │ │ │ │ ├── Image_12R_1stHO.png │ │ │ │ ├── Image_13L_1stHO.png │ │ │ │ ├── Image_13R_1stHO.png │ │ │ │ ├── Image_14L_1stHO.png │ │ │ │ └── Image_14R_1stHO.png │ │ │ └── images │ │ │ │ ├── Image_11L.jpg │ │ │ │ ├── Image_11R.jpg │ │ │ │ ├── Image_12L.jpg │ │ │ │ ├── Image_12R.jpg │ │ │ │ ├── Image_13L.jpg │ │ │ │ ├── Image_13R.jpg │ │ │ │ ├── Image_14L.jpg │ │ │ │ └── Image_14R.jpg │ │ └── train │ │ │ ├── 1st_manual │ │ │ ├── Image_01L_1stHO.png │ │ │ ├── Image_01R_1stHO.png │ │ │ ├── Image_02L_1stHO.png │ │ │ ├── Image_02R_1stHO.png │ │ │ ├── Image_03L_1stHO.png │ │ │ ├── Image_03R_1stHO.png │ │ │ ├── Image_04L_1stHO.png │ │ │ ├── Image_04R_1stHO.png │ │ │ ├── Image_05L_1stHO.png │ │ │ ├── Image_05R_1stHO.png │ │ │ ├── Image_06L_1stHO.png │ │ │ ├── Image_06R_1stHO.png │ │ │ ├── Image_07L_1stHO.png │ │ │ ├── Image_07R_1stHO.png │ │ │ ├── Image_08L_1stHO.png │ │ │ ├── Image_08R_1stHO.png │ │ │ ├── Image_09L_1stHO.png │ │ │ ├── Image_09R_1stHO.png │ │ │ ├── Image_10L_1stHO.png │ │ │ └── Image_10R_1stHO.png │ │ │ └── images │ │ │ ├── Image_01L.jpg │ │ │ ├── Image_01R.jpg │ │ │ ├── Image_02L.jpg │ │ │ ├── Image_02R.jpg │ │ │ ├── Image_03L.jpg │ │ │ ├── Image_03R.jpg │ │ │ ├── Image_04L.jpg │ │ │ ├── Image_04R.jpg │ │ │ ├── Image_05L.jpg │ │ │ ├── Image_05R.jpg │ │ │ ├── Image_06L.jpg │ │ │ ├── Image_06R.jpg │ │ │ ├── Image_07L.jpg │ │ │ ├── Image_07R.jpg │ │ │ ├── Image_08L.jpg │ │ │ ├── Image_08R.jpg │ │ │ ├── Image_09L.jpg │ │ │ ├── Image_09R.jpg │ │ │ ├── Image_10L.jpg │ │ │ └── Image_10R.jpg │ └── DRIVE │ │ ├── test │ │ ├── 1st_manual │ │ │ ├── 01_manual1.gif │ │ │ ├── 02_manual1.gif │ │ │ ├── 03_manual1.gif │ │ │ ├── 04_manual1.gif │ │ │ ├── 05_manual1.gif │ │ │ ├── 06_manual1.gif │ │ │ ├── 07_manual1.gif │ │ │ ├── 08_manual1.gif │ │ │ ├── 09_manual1.gif │ │ │ ├── 10_manual1.gif │ │ │ ├── 11_manual1.gif │ │ │ ├── 12_manual1.gif │ │ │ ├── 13_manual1.gif │ │ │ ├── 14_manual1.gif │ │ │ ├── 15_manual1.gif │ │ │ ├── 16_manual1.gif │ │ │ ├── 17_manual1.gif │ │ │ ├── 18_manual1.gif │ │ │ ├── 19_manual1.gif │ │ │ └── 20_manual1.gif │ │ └── images │ │ │ ├── 01_test.tif │ │ │ ├── 02_test.tif │ │ │ ├── 03_test.tif │ │ │ ├── 04_test.tif │ │ │ ├── 05_test.tif │ │ │ ├── 06_test.tif │ │ │ ├── 07_test.tif │ │ │ ├── 08_test.tif │ │ │ ├── 09_test.tif │ │ │ ├── 10_test.tif │ │ │ ├── 11_test.tif │ │ │ ├── 12_test.tif │ │ │ ├── 13_test.tif │ │ │ ├── 14_test.tif │ │ │ ├── 15_test.tif │ │ │ ├── 16_test.tif │ │ │ ├── 17_test.tif │ │ │ ├── 18_test.tif │ │ │ ├── 19_test.tif │ │ │ └── 20_test.tif │ │ └── train │ │ ├── 1st_manual │ │ ├── 21_manual1.gif │ │ ├── 22_manual1.gif │ │ ├── 23_manual1.gif │ │ ├── 24_manual1.gif │ │ ├── 25_manual1.gif │ │ ├── 26_manual1.gif │ │ ├── 27_manual1.gif │ │ ├── 28_manual1.gif │ │ ├── 29_manual1.gif │ │ ├── 30_manual1.gif │ │ ├── 31_manual1.gif │ │ ├── 32_manual1.gif │ │ ├── 33_manual1.gif │ │ ├── 34_manual1.gif │ │ ├── 35_manual1.gif │ │ ├── 36_manual1.gif │ │ ├── 37_manual1.gif │ │ ├── 38_manual1.gif │ │ ├── 39_manual1.gif │ │ └── 40_manual1.gif │ │ └── images │ │ ├── 21_train.tif │ │ ├── 22_train.tif │ │ ├── 23_train.tif │ │ ├── 24_train.tif │ │ ├── 25_train.tif │ │ ├── 26_train.tif │ │ ├── 27_train.tif │ │ ├── 28_train.tif │ │ ├── 29_train.tif │ │ ├── 30_train.tif │ │ ├── 31_train.tif │ │ ├── 32_train.tif │ │ ├── 33_train.tif │ │ ├── 34_train.tif │ │ ├── 35_train.tif │ │ ├── 36_train.tif │ │ ├── 37_train.tif │ │ ├── 38_train.tif │ │ ├── 39_train.tif │ │ └── 40_train.tif ├── experiment_log.txt ├── finally_evaluate.py ├── get_mask.py ├── loaddata.py ├── merge_imgs.py ├── models.py ├── preprocessing.py ├── show_img │ ├── CHASE_test.png │ ├── DRIVE_test.png │ ├── Unet++.png │ ├── Unet.png │ ├── patchVSpatch_labelVSpatch_predict.png │ └── preprocessing.png ├── train_test_evaluate.py └── 眼底血管分割实验报告.pdf ├── README.md └── Reading-list ├── registration-paper ├── 1903.03545.pdf ├── 1908.02738.pdf ├── An Unsupervised Learning Model for Deformable Medical Image Registration.pdf ├── VoxelMorph A Learning Framework for Deformable Medical Image Registration.pdf └── 医学影像报告-第14组.pdf └── segmentation-paper ├── [10] Deep_Layer_Aggregation_CVPR_2018_paper.pdf ├── [1] Adaptive histogram equalization and its variations-影印版.pdf ├── [1] Adaptive histogram equalization and its variations-扫描版.pdf ├── [2] Contrast Limited Adaptive Histogram Equalization.pdf ├── [3] Adaptive contrast enhancement using local region stretching.pdf ├── [4] 眼底图像检测和分析系统的设计与开发_马青柯.caj ├── [5] 基于改进的U_Net眼底视网膜血管分割_梁礼明.pdf ├── [6] DUNet-A deformable network for retinal vessel segmentation.pdf ├── [7] Retinal vessel segmentation using the 2-D Gabor wavelet and supervised classification.pdf ├── [8] UNet.pdf └── [9] UNet++.pdf 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Deep_Layer_Aggregation_CVPR_2018_paper.pdf -------------------------------------------------------------------------------- /Reading-list/segmentation-paper/[1] Adaptive histogram equalization and its variations-影印版.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Allenem/MedicalImage/HEAD/Reading-list/segmentation-paper/[1] Adaptive histogram equalization and its variations-影印版.pdf -------------------------------------------------------------------------------- /Reading-list/segmentation-paper/[1] Adaptive histogram equalization and its variations-扫描版.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Allenem/MedicalImage/HEAD/Reading-list/segmentation-paper/[1] Adaptive histogram equalization and its variations-扫描版.pdf -------------------------------------------------------------------------------- /Reading-list/segmentation-paper/[2] Contrast Limited Adaptive Histogram Equalization.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Allenem/MedicalImage/HEAD/Reading-list/segmentation-paper/[2] Contrast Limited Adaptive Histogram Equalization.pdf -------------------------------------------------------------------------------- /Reading-list/segmentation-paper/[3] Adaptive contrast enhancement using local region stretching.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Allenem/MedicalImage/HEAD/Reading-list/segmentation-paper/[3] Adaptive contrast enhancement using local region stretching.pdf -------------------------------------------------------------------------------- /Reading-list/segmentation-paper/[4] 眼底图像检测和分析系统的设计与开发_马青柯.caj: -------------------------------------------------------------------------------- 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/Reading-list/segmentation-paper/[7] Retinal vessel segmentation using the 2-D Gabor wavelet and supervised classification.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Allenem/MedicalImage/HEAD/Reading-list/segmentation-paper/[7] Retinal vessel segmentation using the 2-D Gabor wavelet and supervised classification.pdf -------------------------------------------------------------------------------- /Reading-list/segmentation-paper/[8] UNet.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Allenem/MedicalImage/HEAD/Reading-list/segmentation-paper/[8] UNet.pdf -------------------------------------------------------------------------------- /Reading-list/segmentation-paper/[9] UNet++.pdf: -------------------------------------------------------------------------------- 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