├── LICENSE ├── README.md ├── examples ├── demuxlet_example.ipynb └── scrublet_basics.ipynb ├── old_versions └── v0.1 │ ├── LICENSE │ ├── README.md │ ├── examples │ ├── 10X_PBMC-8k_example.ipynb │ ├── 10X_PBMC-8k_scanpy_example.ipynb │ ├── demuxlet_PBMC_example.ipynb │ └── old │ │ └── 180306_basic_example.ipynb │ ├── requirements.txt │ ├── setup.py │ └── src │ └── scrublet │ ├── __init__.py │ ├── helper_functions.py │ └── scrublet.py ├── requirements.txt ├── setup.py └── src └── scrublet ├── __init__.py ├── helper_functions.py └── scrublet.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/README.md -------------------------------------------------------------------------------- /examples/demuxlet_example.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/examples/demuxlet_example.ipynb -------------------------------------------------------------------------------- /examples/scrublet_basics.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/examples/scrublet_basics.ipynb -------------------------------------------------------------------------------- /old_versions/v0.1/LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/old_versions/v0.1/LICENSE -------------------------------------------------------------------------------- /old_versions/v0.1/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/old_versions/v0.1/README.md -------------------------------------------------------------------------------- /old_versions/v0.1/examples/10X_PBMC-8k_example.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/old_versions/v0.1/examples/10X_PBMC-8k_example.ipynb -------------------------------------------------------------------------------- /old_versions/v0.1/examples/10X_PBMC-8k_scanpy_example.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/old_versions/v0.1/examples/10X_PBMC-8k_scanpy_example.ipynb -------------------------------------------------------------------------------- /old_versions/v0.1/examples/demuxlet_PBMC_example.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/old_versions/v0.1/examples/demuxlet_PBMC_example.ipynb -------------------------------------------------------------------------------- /old_versions/v0.1/examples/old/180306_basic_example.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/old_versions/v0.1/examples/old/180306_basic_example.ipynb -------------------------------------------------------------------------------- /old_versions/v0.1/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/old_versions/v0.1/requirements.txt -------------------------------------------------------------------------------- /old_versions/v0.1/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/old_versions/v0.1/setup.py -------------------------------------------------------------------------------- /old_versions/v0.1/src/scrublet/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/old_versions/v0.1/src/scrublet/__init__.py -------------------------------------------------------------------------------- /old_versions/v0.1/src/scrublet/helper_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/old_versions/v0.1/src/scrublet/helper_functions.py -------------------------------------------------------------------------------- /old_versions/v0.1/src/scrublet/scrublet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/old_versions/v0.1/src/scrublet/scrublet.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/setup.py -------------------------------------------------------------------------------- /src/scrublet/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/src/scrublet/__init__.py -------------------------------------------------------------------------------- /src/scrublet/helper_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/src/scrublet/helper_functions.py -------------------------------------------------------------------------------- /src/scrublet/scrublet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AllonMKlein/scrublet/HEAD/src/scrublet/scrublet.py --------------------------------------------------------------------------------