├── LICENSE ├── Makefile ├── README.md ├── SBMLtoODEpy.ipynb ├── Tutorial.md ├── make.bat ├── paper.bib ├── paper.md ├── readthedocs.yml ├── requires.txt ├── sbmltoodepy ├── __init__.py ├── __pycache__ │ ├── Borisov2009.cpython-37.pyc │ ├── Cizmeci2013.cpython-37.pyc │ ├── Guyton1972.cpython-37.pyc │ ├── Kerkhoven2013.cpython-37.pyc │ ├── ModelDataClasses.cpython-37.pyc │ ├── ParseAndGenerate.cpython-37.pyc │ ├── SBMLModelClasses.cpython-37.pyc │ ├── SBMLparser.cpython-37.pyc │ ├── Vizan2013.cpython-37.pyc │ ├── Waugh2006.cpython-37.pyc │ ├── Zi2011.cpython-37.pyc │ ├── __init__.cpython-37.pyc │ └── python3ClassGenerator.cpython-37.pyc ├── dataclasses.py ├── modelclasses.py ├── modulegeneration.py ├── parse.py ├── sbml_files │ ├── Borisov2009_insulin_EGF.xml │ ├── Guyton1972_Angiotensin.xml │ ├── Kerkhoven2013_Glycolysis_in_T_brucei.xml │ ├── Smallbone2013_Colon_Crypt_cycle.xml │ ├── Waugh2006_Diabetic_Wound_Healing_TGF_B_Dynamics.xml │ └── Zi2011_TGF_beta_Pathway.xml └── utilities.py ├── setup.py └── source ├── Changelog.md ├── DataClasses.rst ├── ModelClasses.rst ├── Parse.rst ├── README.md ├── Tutorial.md ├── conf.py ├── index.rst └── requirements.txt /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnabelSMRuggiero/sbmltoodepy/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnabelSMRuggiero/sbmltoodepy/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnabelSMRuggiero/sbmltoodepy/HEAD/README.md -------------------------------------------------------------------------------- /SBMLtoODEpy.ipynb: 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