├── LICENSE ├── README.rst ├── experiments ├── content_aware_pruning.ipynb ├── context_aware_link_predition │ ├── 1_biobert_embedding_generation.ipynb │ ├── 2_dnabert_embedding_generation.ipynb │ └── 3_specific_edge_prediction.ipynb └── time_stratified_link_prediction.ipynb ├── images ├── edgeproperty.png └── metagraph.png ├── main.py └── notebooks ├── 1_ontology_download_and_cleaning.ipynb ├── 2_mapping_rules.ipynb ├── 3_edges.ipynb ├── 4_nodes_and_entity_linking.ipynb └── requirements.txt /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/LICENSE -------------------------------------------------------------------------------- /README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/README.rst -------------------------------------------------------------------------------- /experiments/content_aware_pruning.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/experiments/content_aware_pruning.ipynb -------------------------------------------------------------------------------- /experiments/context_aware_link_predition/1_biobert_embedding_generation.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/experiments/context_aware_link_predition/1_biobert_embedding_generation.ipynb -------------------------------------------------------------------------------- /experiments/context_aware_link_predition/2_dnabert_embedding_generation.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/experiments/context_aware_link_predition/2_dnabert_embedding_generation.ipynb -------------------------------------------------------------------------------- /experiments/context_aware_link_predition/3_specific_edge_prediction.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/experiments/context_aware_link_predition/3_specific_edge_prediction.ipynb -------------------------------------------------------------------------------- /experiments/time_stratified_link_prediction.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/experiments/time_stratified_link_prediction.ipynb -------------------------------------------------------------------------------- /images/edgeproperty.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/images/edgeproperty.png -------------------------------------------------------------------------------- /images/metagraph.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/images/metagraph.png -------------------------------------------------------------------------------- /main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/main.py -------------------------------------------------------------------------------- /notebooks/1_ontology_download_and_cleaning.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/notebooks/1_ontology_download_and_cleaning.ipynb -------------------------------------------------------------------------------- /notebooks/2_mapping_rules.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/notebooks/2_mapping_rules.ipynb -------------------------------------------------------------------------------- /notebooks/3_edges.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/notebooks/3_edges.ipynb -------------------------------------------------------------------------------- /notebooks/4_nodes_and_entity_linking.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/notebooks/4_nodes_and_entity_linking.ipynb -------------------------------------------------------------------------------- /notebooks/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/AnacletoLAB/RNA-KG/HEAD/notebooks/requirements.txt --------------------------------------------------------------------------------