└── README.md /README.md: -------------------------------------------------------------------------------- 1 | # Epidemiology Tools 2 | A list of resources of tools to assist with epidemiology research. 3 | 4 | Please contribute to this list by pull request or leave me a comment. 5 | 6 | ## Table of Contents 7 | - [Epidemiology](#epidemiology) 8 | - [Python](#python) 9 | - [R](#r) 10 | - [Stata](#stata) 11 | - [SAS](#sas) 12 | - [SPSS](#spss) 13 | - [API](#api) 14 | - [Datasets](#datasets) 15 | - [Misc](#misc) 16 | - [Other Curated Lists](#other-curated-lists) 17 | 18 | ## Epidemiology 19 | 20 | #### Epidemiology Books 21 | 22 | - [Essentials of Epidemiology in Public Health](https://amzn.to/2UpdxSh) 23 | - [Epidemiology: Beyond the Basics](https://amzn.to/2G9BBom) 24 | - [Modern Epidemiology](https://amzn.to/2RXAu2) 25 | - [Epidemiology: Study Design and Data Analysis](https://amzn.to/2TnhVRP) 26 | - [Statistics for Epidemiology](https://amzn.to/2MFN5Bf) 27 | - [Epidemiologic Methods: Studying The Occurrence Of Illness](https://amzn.to/2EjfKs8) 28 | 29 | #### Epidemiology Review Website 30 | - [Epi Tutorial](http://activepi.herokuapp.com/courses/active-epi-course) 31 | 32 | ## Python 33 | 34 | #### Survival Analysis with Python 35 | - [Scikit Survival](https://github.com/sebp/scikit-survival) 36 | 37 | ## R 38 | 39 | #### R Books 40 | - [Text Mining with R](http://tidytextmining.com/) 41 | - [Mastering Text Mining with R](http://shop.oreilly.com/product/9781783551811.do?green=C89CE13A-3CEC-5EBD-08AC-F97ED76586DF&intcmp=af-mybuy-9781783551811.IP) 42 | - [Text Mining in Practice with R](https://www.wiley.com/en-us/Text+Mining+in+Practice+with+R-p-9781119282013) 43 | - [R for Data Science](https://amzn.to/2MFCLcy) 44 | - [R in Action: Data Analysis and Graphics with R](https://amzn.to/2CWUHuz) 45 | - [R for Everyone: Advanced Analytics and Graphics](https://amzn.to/2MH1wF4) 46 | 47 | #### R Courses Online 48 | 49 | - [Intro to R](https://www.datacamp.com/courses/free-introduction-to-r) 50 | - [R Programming on Coursera](https://www.coursera.org/learn/r-programming) 51 | - [Mastering Software Development in R](https://www.coursera.org/specializations/r) 52 | 53 | #### R Packages 54 | 55 | - [Epidemiology R Packages](https://www.r-pkg.org/search.html?q=epidemiology&page=1) 56 | - [openEBGM: EBGM Disproportionality Scores for Adverse Event Data Mining](https://cran.r-project.org/web/packages/openEBGM/index.html) 57 | 58 | #### R Cheat Sheet 59 | 60 | - [dplyr package for data cleaning](https://ugoproto.github.io/ugo_r_doc/dplyr.pdf) 61 | 62 | #### Creating Publication Quality Tables 63 | 64 | - [Design Principles](https://hughjonesd.github.io/huxtable/design-principles.html) 65 | 66 | ## Stata 67 | - [Stata Cheat Sheet](http://geocenter.github.io/StataTraining/portfolio/01_resource/?fbclid=IwAR1L4-_1urU4BeNwvcMoPoBslhGh31c7XxTpSWkJglybQoCa4mSSBNQTUp0) 68 | 69 | ## SAS 70 | 71 | #### SAS Books 72 | - [Little SAS Book](https://amzn.to/2CR6URI) 73 | - [Learning SAS by Example: A Programmer's Guide](https://amzn.to/2UleDhU) 74 | - [Applied Statistics and the SAS Programming Language](https://amzn.to/2DFLOXW) 75 | 76 | #### SAS Certification 77 | 78 | - [Courses to get SAS certified](https://www.sas.com/en_us/certification.html) 79 | - [SAS courses on Coursera](https://www.coursera.org/courses?query=sas) 80 | 81 | #### Free SAS Course 82 | - [Intro to SAS](https://support.sas.com/edu/elearning.html?ctry=us&productType=library&fbclid=IwAR38FboNEhSRgM5UbixtenOT4PUAchLWmO-IzULOiHWkkcKcwGV_Wvh0Qks) 83 | 84 | #### SAS Tutorials 85 | - [UCLA SAS Tutorials](https://stats.idre.ucla.edu/sas/) 86 | - [SAS Macros Tutorial](https://stats.idre.ucla.edu/sas/seminars/sas-macros-introduction/) 87 | 88 | #### SAS Cheat Sheet 89 | - [SAS](https://sites.ualberta.ca/~ahamann/teaching/renr480/SAS-Cheat.pdf) 90 | 91 | ## SPSS 92 | 93 | #### SPSS Tutorials 94 | - [UCLA SPSS Examples](https://stats.idre.ucla.edu/other/dae/) 95 | 96 | ## API 97 | 98 | #### 99 | - [SEER API](https://seer.cancer.gov/registrars/api/) 100 | 101 | ## Datasets 102 | 103 | #### 104 | - [UC Berkeley Data Resources](http://guides.lib.berkeley.edu/publichealth/healthstatistics/rawdata) 105 | - [UIC Data Resources](https://researchguides.uic.edu/c.php?g=252253&p=1683071) 106 | - [CDC Datasets](https://www.cdc.gov/DataStatistics/) 107 | - [UPENN Data Resources](https://guides.library.upenn.edu/c.php?g=475317&p=3256960) 108 | - [Project DataSphere](https://www.projectdatasphere.org/projectdatasphere/html/home) 109 | - [National Ambulatory Medical Care Survey](https://www.cdc.gov/nchs/ahcd/datasets_documentation_related.htm) 110 | - [National Hospital Ambulatory Medical Care Survey](https://www.cdc.gov/nchs/ahcd/datasets_documentation_related.htm) 111 | - [National Health and Nutrition Examination Survey](https://wwwn.cdc.gov/nchs/nhanes/default.aspx) 112 | - [Medical Expenditure Panel Survey](https://meps.ahrq.gov/mepsweb/) 113 | 114 | ## Misc 115 | 116 | #### SQL 117 | 118 | - [Intro to SQL](https://www.datacamp.com/courses/intro-to-sql-for-data-science) 119 | - [SQL Tutorial](https://www.w3schools.com/sql/default.asp) 120 | - [SQLite Tutorial](http://www.sqlitetutorial.net/) 121 | 122 | #### Funding 123 | - [Graduate Student Funding Opportunities](https://research.jhu.edu/rdt/funding-opportunities/graduate/) 124 | 125 | #### Jobs 126 | 127 | - [Emory Public Health Employment Connection website](http://cfusion.sph.emory.edu/PHEC/index.cfm?CFID=13092232&CFTOKEN=80281718) 128 | 129 | - [EpiMonitor Job Listings](https://www.epimonitor.net/) 130 | 131 | - [Council for State and Territorial Epidemiologists website](http://www.cste.org/ )' 132 | 133 | - [National Association of County and City Health Officials](http://www.naccho.org/ ) 134 | 135 | - [Applied Epidemiology: Fellowship opportunities](http://www.cste.org/?page=CSTEFellowships) 136 | 137 | - [Florida Department of Health](http://www.floridahealth.gov/%5C/diseases-and-conditions/disease-reporting-and-management/florida-epidemic-intelligence-service/index.html) 138 | 139 | - [California Epidemiologic Investigation Service (Cal-EIS) Fellowship Program](https://www.cdph.ca.gov/programs/Pages/CaliforniaEpidemiologicInvestigationService(Cal-EIS).aspx) 140 | 141 | - [CDC Fellowship Program](https://www.cdc.gov/phap/) 142 | 143 | - [ORISE Fellowship](https://orise.orau.gov/stem/internships-fellowships-research-opportunities/index.html) 144 | 145 | - [Job Search Tips](https://docs.google.com/document/d/1ooZ5MtfEo9lHDY_zS2UeFJRY8H5b17JfU5L_Ib6xlfA/mobilebasic?fbclid=IwAR15ni1J7xR9eo1bE5k0o4x3TKMHU5FncDfKdrMGjlTp0R_YKWEg3xIoLjo) 146 | 147 | - [IDDJobs](https://iddjobs.org/) 148 | 149 | - [USA Jobs](usajobs.gov) 150 | 151 | - [TX Gen Jobs](https://www.txgen.tamu.edu/jobs/) 152 | 153 | - [BioSpace Jobs](https://www.biospace.com/jobs/) 154 | 155 | ## Other Curated Lists 156 | 157 | - [Useful R Packages](https://github.com/qinwf/awesome-R) 158 | - [Data Visualization Tools](https://github.com/infoculture/awesome-datajournalism) 159 | - [Machine Learning](https://github.com/josephmisiti/awesome-machine-learning) 160 | --------------------------------------------------------------------------------