├── .github └── workflows │ ├── docs.yml │ └── qc.yml ├── .gitignore ├── LICENSE.txt ├── README.md ├── apollo_sv-base.json ├── apollo_sv-base.obo ├── apollo_sv-base.owl ├── apollo_sv-full.json ├── apollo_sv-full.obo ├── apollo_sv-full.owl ├── apollo_sv.json ├── apollo_sv.obo ├── apollo_sv.owl ├── catalog-v001.xml ├── docs ├── cite.md ├── contributing.md ├── index.md └── odk-workflows │ ├── ContinuousIntegration.md │ ├── EditorsWorkflow.md │ ├── ManageDocumentation.md │ ├── ReleaseWorkflow.md │ ├── RepoManagement.md │ ├── RepositoryFileStructure.md │ ├── SettingUpDockerForODK.md │ ├── UpdateImports.md │ ├── components.md │ └── index.md ├── find-highest-obo-id.sh ├── mkdocs.yaml └── src ├── ontology ├── Makefile ├── README-editors.md ├── apollo-sv.owl ├── apollo_sv-edit.owl ├── apollo_sv-idranges.owl ├── apollo_sv-odk.yaml ├── apollo_sv.Makefile ├── catalog-v001.xml ├── imports │ ├── external_import.owl │ ├── geo_import.owl │ ├── geo_terms.txt │ ├── go_import.owl │ ├── go_terms.txt │ ├── iao_import.owl │ ├── iao_terms.txt │ ├── ido_import.owl │ ├── ido_terms.txt │ ├── mf_import.owl │ ├── mf_terms.txt │ ├── omrse_import.owl │ ├── omrse_terms.txt │ ├── ro_import.owl │ └── ro_terms.txt ├── run.bat └── run.sh ├── scripts ├── run-command.sh ├── update_repo.sh └── validate_id_ranges.sc ├── sparql ├── README.md ├── apollo_sv_terms.sparql ├── basic-report.sparql ├── class-count-by-prefix.sparql ├── edges.sparql ├── inject-subset-declaration.ru ├── inject-synonymtype-declaration.ru ├── iri-range-violation.sparql ├── label-with-iri-violation.sparql ├── labels.sparql ├── multiple-replaced_by-violation.sparql ├── obsoletes.sparql ├── owldef-self-reference-violation.sparql ├── postprocess-module.ru ├── preprocess-module.ru ├── simple-seed.sparql ├── subsets-labeled.sparql ├── synonyms.sparql ├── terms.sparql └── xrefs.sparql └── templates └── external_import.tsv /.github/workflows/docs.yml: -------------------------------------------------------------------------------- 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