├── .github └── workflows │ ├── CI.yml │ └── release.yml ├── .gitignore ├── .python-version ├── LICENSE ├── README.md ├── config ├── eval_config.yaml ├── replogle_config.yaml └── tahoe_config.yaml ├── pyproject.toml ├── ruff.toml ├── src └── cell_eval │ ├── __init__.py │ ├── __main__.py │ ├── _baseline.py │ ├── _cli │ ├── __init__.py │ ├── _baseline.py │ ├── _const.py │ ├── _prep.py │ ├── _run.py │ └── _score.py │ ├── _evaluator.py │ ├── _pipeline │ ├── __init__.py │ └── _runner.py │ ├── _score.py │ ├── _types │ ├── __init__.py │ ├── _anndata.py │ ├── _de.py │ └── _enums.py │ ├── data.py │ ├── metrics │ ├── __init__.py │ ├── _anndata.py │ ├── _de.py │ ├── _impl.py │ ├── _registry.py │ └── base.py │ ├── py.typed │ └── utils.py ├── tests ├── test_eval.py └── test_utils.py └── tutorials └── vcc └── vcc.ipynb /.github/workflows/CI.yml: -------------------------------------------------------------------------------- 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