├── .gitattributes ├── .github ├── dependabot.yml └── workflows │ ├── CI.yml │ ├── pre-commit.yml │ ├── release-plz.yml │ └── rust.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── .release-plz.toml ├── CHANGELOG.md ├── CITATION.cff ├── Cargo.lock ├── Cargo.toml ├── LICENSE ├── README.md ├── README.tpl ├── benches ├── iai.rs ├── my_benchmark.rs └── vilar │ ├── README.md │ ├── plot.py │ ├── vilar.bngl │ ├── vilar.csv │ ├── vilar.jl │ ├── vilar.ka │ ├── vilar.png │ ├── vilar.py │ ├── vilar.rs │ ├── vilar_cayenne.py │ └── vilar_gillespy2.py ├── docs ├── api.md ├── index.md ├── mm.png └── sir.png ├── examples ├── dimers.rs ├── mm.py ├── sir.py └── sir.rs ├── mkdocs.yml ├── mm.png ├── pixi.lock ├── pyproject.toml ├── python └── rebop │ ├── __init__.py │ ├── gillespie.py │ └── py.typed ├── sir.png ├── src ├── expr.rs ├── gillespie.rs ├── gillespie_macro.rs ├── lib.rs └── pyo3_gillespie.rs └── tests ├── __init__.py └── test_rebop.py /.gitattributes: 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