├── .gitignore ├── 404.html ├── Alignment.md ├── Clustering.md ├── Databases.md ├── Gemfile ├── INSTALL.md ├── LICENSE ├── README.md ├── Trees.md ├── _config.yml ├── _includes ├── cluster.html ├── example.html ├── head.html ├── helloworld.html ├── image.html ├── jukes-cantor.html ├── loadD3.html ├── needleman.html ├── njtree.html ├── numtrees.html ├── phylo.html ├── rooting.html ├── sidebar.html └── toc.html ├── _layouts ├── default.html ├── home.html └── page.html ├── data ├── jukes.csv └── nj-example.csv ├── index.md ├── public ├── GitHub-Mark-Light-32px.png ├── GridBuilder.LICENSE ├── cc-by-sa.png ├── css │ ├── hyde.css │ ├── needleman.css │ ├── phylotree.css │ ├── poole.css │ └── syntax.css ├── img │ ├── Telefonbog_ubt-0.JPG │ ├── chimpanzee.svg │ ├── d.png │ ├── ds.png │ ├── dsu.png │ ├── du.png │ ├── s.png │ ├── simple-tree.svg │ ├── su.png │ └── u.png ├── js │ ├── GridBuilder.js │ ├── d3-color.min.js │ ├── d3-interpolate.min.js │ ├── d3-scale-chromatic.min.js │ ├── d3.LICENSE.txt │ ├── d3.geom.min.js │ ├── d3.js │ ├── d3.layout.min.js │ ├── d3.v3.min.js │ ├── d3.v4.min.js │ ├── jquery.MIT-LICENSE.txt │ ├── jquery.min.js │ ├── phylo.js │ ├── phylotree.js │ ├── rooting.js │ └── underscore-min.js └── phylotree.LICENSE ├── run-server.sh ├── scripts ├── jukes.R └── mlst.R └── testpage.md /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ArtPoon/BioID/HEAD/.gitignore -------------------------------------------------------------------------------- /404.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ArtPoon/BioID/HEAD/404.html -------------------------------------------------------------------------------- /Alignment.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ArtPoon/BioID/HEAD/Alignment.md 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