├── .gitignore ├── LICENSE ├── README.md ├── conda_py3_tractor.yml ├── images └── tractor_icon.png ├── ipynbs └── hail_example_tractor_gwas.ipynb ├── resources └── genomic_chunks │ ├── README.md │ ├── chunks_b37_20cM │ ├── chunks_chr1.txt │ ├── chunks_chr10.txt │ ├── chunks_chr10_rechr.txt │ ├── chunks_chr11.txt │ ├── chunks_chr11_rechr.txt │ ├── chunks_chr12.txt │ ├── chunks_chr12_rechr.txt │ ├── chunks_chr13.txt │ ├── chunks_chr13_rechr.txt │ ├── chunks_chr14.txt │ ├── chunks_chr14_rechr.txt │ ├── chunks_chr15.txt │ ├── chunks_chr15_rechr.txt │ ├── chunks_chr16.txt │ ├── chunks_chr16_rechr.txt │ ├── chunks_chr17.txt │ ├── chunks_chr17_rechr.txt │ ├── chunks_chr18.txt │ ├── chunks_chr18_rechr.txt │ ├── chunks_chr19.txt │ ├── chunks_chr19_rechr.txt │ ├── chunks_chr1_rechr.txt │ ├── chunks_chr2.txt │ ├── chunks_chr20.txt │ ├── chunks_chr20_rechr.txt │ ├── chunks_chr21.txt │ ├── chunks_chr21_rechr.txt │ ├── chunks_chr22.txt │ ├── chunks_chr22_rechr.txt │ ├── chunks_chr2_rechr.txt │ ├── chunks_chr3.txt │ ├── chunks_chr3_rechr.txt │ ├── chunks_chr4.txt │ ├── chunks_chr4_rechr.txt │ ├── chunks_chr5.txt │ ├── chunks_chr5_rechr.txt │ ├── chunks_chr6.txt │ ├── chunks_chr6_rechr.txt │ ├── chunks_chr7.txt │ ├── chunks_chr7_rechr.txt │ ├── chunks_chr8.txt │ ├── chunks_chr8_rechr.txt │ ├── chunks_chr9.txt │ └── chunks_chr9_rechr.txt │ ├── chunks_b37_40cM │ ├── chunks_chr1.txt │ ├── chunks_chr10.txt │ ├── chunks_chr10_rechr.txt │ ├── chunks_chr11.txt │ ├── chunks_chr11_rechr.txt │ ├── chunks_chr12.txt │ ├── chunks_chr12_rechr.txt │ ├── chunks_chr13.txt │ ├── chunks_chr13_rechr.txt │ ├── chunks_chr14.txt │ ├── chunks_chr14_rechr.txt │ ├── chunks_chr15.txt │ ├── chunks_chr15_rechr.txt │ ├── chunks_chr16.txt │ ├── chunks_chr16_rechr.txt │ ├── chunks_chr17.txt │ ├── chunks_chr17_rechr.txt │ ├── chunks_chr18.txt │ ├── chunks_chr18_rechr.txt │ ├── chunks_chr19.txt │ ├── chunks_chr19_rechr.txt │ ├── chunks_chr1_rechr.txt │ ├── chunks_chr2.txt │ ├── chunks_chr20.txt │ ├── chunks_chr20_rechr.txt │ ├── chunks_chr21.txt │ ├── chunks_chr21_rechr.txt │ ├── chunks_chr22.txt │ ├── chunks_chr22_rechr.txt │ ├── chunks_chr2_rechr.txt │ ├── chunks_chr3.txt │ ├── chunks_chr3_rechr.txt │ ├── chunks_chr4.txt │ ├── chunks_chr4_rechr.txt │ ├── chunks_chr5.txt │ ├── chunks_chr5_rechr.txt │ ├── chunks_chr6.txt │ ├── chunks_chr6_rechr.txt │ ├── chunks_chr7.txt │ ├── chunks_chr7_rechr.txt │ ├── chunks_chr8.txt │ ├── chunks_chr8_rechr.txt │ ├── chunks_chr9.txt │ └── chunks_chr9_rechr.txt │ ├── chunks_b37_4cM │ ├── chunks_chr1.txt │ ├── chunks_chr10.txt │ ├── chunks_chr10_rechr.txt │ ├── chunks_chr11.txt │ ├── chunks_chr11_rechr.txt │ ├── chunks_chr12.txt │ ├── chunks_chr12_rechr.txt │ ├── chunks_chr13.txt │ ├── chunks_chr13_rechr.txt │ ├── chunks_chr14.txt │ ├── chunks_chr14_rechr.txt │ ├── chunks_chr15.txt │ ├── chunks_chr15_rechr.txt │ ├── chunks_chr16.txt │ ├── chunks_chr16_rechr.txt │ ├── chunks_chr17.txt │ ├── chunks_chr17_rechr.txt │ ├── chunks_chr18.txt │ ├── chunks_chr18_rechr.txt │ ├── chunks_chr19.txt │ ├── chunks_chr19_rechr.txt │ ├── chunks_chr1_rechr.txt │ ├── chunks_chr2.txt │ ├── chunks_chr20.txt │ ├── chunks_chr20_rechr.txt │ ├── chunks_chr21.txt │ ├── chunks_chr21_rechr.txt │ ├── chunks_chr22.txt │ ├── chunks_chr22_rechr.txt │ ├── chunks_chr2_rechr.txt │ ├── chunks_chr3.txt │ ├── chunks_chr3_rechr.txt │ ├── chunks_chr4.txt │ ├── chunks_chr4_rechr.txt │ ├── chunks_chr5.txt │ ├── chunks_chr5_rechr.txt │ ├── chunks_chr6.txt │ ├── chunks_chr6_rechr.txt │ ├── chunks_chr7.txt │ ├── chunks_chr7_rechr.txt │ ├── chunks_chr8.txt │ ├── chunks_chr8_rechr.txt │ ├── chunks_chr9.txt │ └── chunks_chr9_rechr.txt │ ├── chunks_b38_20cM │ ├── chunks_chr1.txt │ ├── chunks_chr10.txt │ ├── chunks_chr10_rechr.txt │ ├── chunks_chr11.txt │ ├── chunks_chr11_rechr.txt │ ├── chunks_chr12.txt │ ├── chunks_chr12_rechr.txt │ ├── chunks_chr13.txt │ ├── chunks_chr13_rechr.txt │ ├── chunks_chr14.txt │ ├── chunks_chr14_rechr.txt │ ├── chunks_chr15.txt │ ├── chunks_chr15_rechr.txt │ ├── chunks_chr16.txt │ ├── chunks_chr16_rechr.txt │ ├── chunks_chr17.txt │ ├── chunks_chr17_rechr.txt │ ├── chunks_chr18.txt │ ├── chunks_chr18_rechr.txt │ ├── chunks_chr19.txt │ ├── chunks_chr19_rechr.txt │ ├── chunks_chr1_rechr.txt │ ├── chunks_chr2.txt │ ├── chunks_chr20.txt │ ├── chunks_chr20_rechr.txt │ ├── chunks_chr21.txt │ ├── chunks_chr21_rechr.txt │ ├── chunks_chr22.txt │ ├── chunks_chr22_rechr.txt │ ├── chunks_chr2_rechr.txt │ ├── chunks_chr3.txt │ ├── chunks_chr3_rechr.txt │ ├── chunks_chr4.txt │ ├── chunks_chr4_rechr.txt │ ├── chunks_chr5.txt │ ├── chunks_chr5_rechr.txt │ ├── chunks_chr6.txt │ ├── chunks_chr6_rechr.txt │ ├── chunks_chr7.txt │ ├── chunks_chr7_rechr.txt │ ├── chunks_chr8.txt │ ├── chunks_chr8_rechr.txt │ ├── chunks_chr9.txt │ └── chunks_chr9_rechr.txt │ ├── chunks_b38_4cM │ ├── chunks_chr1.txt │ ├── chunks_chr10.txt │ ├── chunks_chr10_rechr.txt │ ├── chunks_chr11.txt │ ├── chunks_chr11_rechr.txt │ ├── chunks_chr12.txt │ ├── chunks_chr12_rechr.txt │ ├── chunks_chr13.txt │ ├── chunks_chr13_rechr.txt │ ├── chunks_chr14.txt │ ├── chunks_chr14_rechr.txt │ ├── chunks_chr15.txt │ ├── chunks_chr15_rechr.txt │ ├── chunks_chr16.txt │ ├── chunks_chr16_rechr.txt │ ├── chunks_chr17.txt │ ├── chunks_chr17_rechr.txt │ ├── chunks_chr18.txt │ ├── chunks_chr18_rechr.txt │ ├── chunks_chr19.txt │ ├── chunks_chr19_rechr.txt │ ├── chunks_chr1_rechr.txt │ ├── chunks_chr2.txt │ ├── chunks_chr20.txt │ ├── chunks_chr20_rechr.txt │ ├── chunks_chr21.txt │ ├── chunks_chr21_rechr.txt │ ├── chunks_chr22.txt │ ├── chunks_chr22_rechr.txt │ ├── chunks_chr2_rechr.txt │ ├── chunks_chr3.txt │ ├── chunks_chr3_rechr.txt │ ├── chunks_chr4.txt │ ├── chunks_chr4_rechr.txt │ ├── chunks_chr5.txt │ ├── chunks_chr5_rechr.txt │ ├── chunks_chr6.txt │ ├── chunks_chr6_rechr.txt │ ├── chunks_chr7.txt │ ├── chunks_chr7_rechr.txt │ ├── chunks_chr8.txt │ ├── chunks_chr8_rechr.txt │ ├── chunks_chr9.txt │ └── chunks_chr9_rechr.txt │ └── chunks_fullchromosome │ ├── chunks_chr1.txt │ ├── chunks_chr10.txt │ ├── chunks_chr10_rechr.txt │ ├── chunks_chr11.txt │ ├── chunks_chr11_rechr.txt │ ├── chunks_chr12.txt │ ├── chunks_chr12_rechr.txt │ ├── chunks_chr13.txt │ ├── chunks_chr13_rechr.txt │ ├── chunks_chr14.txt │ ├── chunks_chr14_rechr.txt │ ├── chunks_chr15.txt │ ├── chunks_chr15_rechr.txt │ ├── chunks_chr16.txt │ ├── chunks_chr16_rechr.txt │ ├── chunks_chr17.txt │ ├── chunks_chr17_rechr.txt │ ├── chunks_chr18.txt │ ├── chunks_chr18_rechr.txt │ ├── chunks_chr19.txt │ ├── chunks_chr19_rechr.txt │ ├── chunks_chr1_rechr.txt │ ├── chunks_chr2.txt │ ├── chunks_chr20.txt │ ├── chunks_chr20_rechr.txt │ ├── chunks_chr21.txt │ ├── chunks_chr21_rechr.txt │ ├── chunks_chr22.txt │ ├── chunks_chr22_rechr.txt │ ├── chunks_chr2_rechr.txt │ ├── chunks_chr3.txt │ ├── chunks_chr3_rechr.txt │ ├── chunks_chr4.txt │ ├── chunks_chr4_rechr.txt │ ├── chunks_chr5.txt │ ├── chunks_chr5_rechr.txt │ ├── chunks_chr6.txt │ ├── chunks_chr6_rechr.txt │ ├── chunks_chr7.txt │ ├── chunks_chr7_rechr.txt │ ├── chunks_chr8.txt │ ├── chunks_chr8_rechr.txt │ ├── chunks_chr9.txt │ └── chunks_chr9_rechr.txt └── scripts ├── extract_tracts.py ├── extract_tracts_flare.py ├── run_tractor.R ├── unkink_2way_genofile.py └── unkink_2way_mspfile.py /.gitignore: -------------------------------------------------------------------------------- 1 | # Excldue MacOS files 2 | ./.DS_Store 3 | resources/.DS_Store 4 | resources/genomic_chunks/.DS_Store 5 | 6 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | MIT License 2 | 3 | Copyright (c) 2020-2023, Tractor authors. All rights reserved. 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 21 | SOFTWARE. 22 | -------------------------------------------------------------------------------- /images/tractor_icon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Atkinson-Lab/Tractor/0d704b69397d04b03f58eaed90422641927e5ba5/images/tractor_icon.png -------------------------------------------------------------------------------- /resources/genomic_chunks/README.md: -------------------------------------------------------------------------------- 1 | # Genomic Chunks for Phasing with SHAPEIT5 2 | 3 | This directory contains genomic chunks that are prepared for use with the phasing tool SHAPEIT5. 4 | 5 | Each file in the `genomic_chunks` directory contains at least four columns: 6 | 7 | 1. **Column 1: Chunk Index**: A unique identifier for each chunk. 8 | 2. **Column 2: Chromosome/Contig ID**: The identifier for the chromosome or contig to which the chunk belongs. 9 | 3. **Column 3: Chunk Coordinates (with Buffers)**: The genomic coordinates of the chunk, including the left and right buffer regions (flanking regions). 10 | * This column is used for phasing, with overlapping buffer regions across contigs allowing `phase_ligate` to assess phasing concordance using the Switch Error Rate (SER). [SHAPEIT5's `ligate` documentation](https://odelaneau.github.io/shapeit5/docs/documentation/ligate/) recomments an SER above 80-90% for optimal results. 11 | 4. **Column 4: Chunk Coordinates (without Buffers)**: The genomic coordinates of the chunk, excluding the buffer regions. 12 | 13 | ## Resources 14 | 15 | - The **b38 chunks** for 4cM and 20cM were sourced directly from [SHAPEIT5's GitHub resources](https://github.com/odelaneau/shapeit5/tree/main/resources/chunks/b38). File names were standardized across directories, and alternative versions with a different chromosome naming convention were created. 16 | - The **b37 chunks** were generated from the TGP Phase 3 (GRCh37) dataset, which underwent quality control for high-quality variants, SNPs, biallelic variants, and a minor allele frequency (MAF) of 0.05%. These chunks were created using GLIMPSE2; see the [GLIMPSE2's `chunk` documentation](https://odelaneau.github.io/GLIMPSE/docs/documentation/chunk/) for more details. 17 | - The `chunks_fullchromosome` directory contains files for users who wish to perform phasing on entire chromosomes. These chunks are compatible with both b37 and b38 genome coordinates. 18 | 19 | All directories include files named `chunk_chr${chr}.txt` and `chunk_chr${chr}_rechr.txt`, differing only in chromosome nomenclature. Files with the format `chunk_chr${chr}.txt` use chromosome IDs like 1, 2, 3, ..., 22, while `chunk_chr${chr}_rechr.txt` uses the format `chr1`, `chr2`, `chr3`, ..., `chr22`. 20 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr1.txt: -------------------------------------------------------------------------------- 1 | 0 1 1:1-11260928 1:1-10260949 21.7737 10249915 63301 63301 2 | 1 1 1:9260941-21848075 1:10260950-20790583 22.844 10529595 63301 63301 3 | 2 1 1:19790568-38584749 1:20790584-37584948 20.001 16794085 83762 83762 4 | 3 1 1:36585077-59164140 1:37584949-58164021 20.0011 20578804 102320 102320 5 | 4 1 1:57163872-77605540 1:58164022-76605450 20.0004 18441421 95420 95420 6 | 5 1 1:75102467-97725067 1:76605451-96129863 20 19524328 102298 102298 7 | 6 1 1:95129908-115924308 1:96129864-114851791 20.0015 18721829 101054 101054 8 | 7 1 1:113822100-155668700 1:114851792-154668365 20.0005 39816406 73493 73493 9 | 8 1 1:153328625-169178572 1:154668366-168178392 20.0009 13509857 75473 75473 10 | 9 1 1:167178161-192552969 1:168178393-191093878 20.0013 22915401 122938 122938 11 | 10 1 1:188766072-209809320 1:191093879-208809389 20.0042 17715334 90633 90633 12 | 11 1 1:207809058-229156998 1:208809390-228083173 20 19273651 105052 105052 13 | 12 1 1:226307579-239597345 1:228083174-238597291 20.2314 10514087 63301 63301 14 | 13 1 1:237597292-1000000000 1:238597292-1000000000 21.4315 10643236 69423 69423 15 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr10.txt: -------------------------------------------------------------------------------- 1 | 0 10 10:1-9518250 10:1-8518247 20.0054 8457752 61916 61916 2 | 1 10 10:7518177-19547013 10:8518248-18546942 20.0001 10028648 65171 65171 3 | 2 10 10:17546674-36055585 10:18546943-34311856 20.0001 15764845 99213 99213 4 | 3 10 10:33311330-57544329 10:34311857-56460158 20 22148045 101611 101611 5 | 4 10 10:55460324-78683079 10:56460159-77682881 20.0227 21222424 118457 118457 6 | 5 10 10:75711076-95318121 10:77682882-94202471 20.0074 16519476 92960 92960 7 | 6 10 10:92907030-116594760 10:94202472-115594403 20.0107 21391710 108661 108661 8 | 7 10 10:114594481-127685323 10:115594404-126685254 20.0001 11090605 64590 64590 9 | 8 10 10:125684989-1000000000 10:126685255-1000000000 21.1057 8839047 60195 60195 10 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr10_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr10 chr10:1-9518250 chr10:1-8518247 20.0054 8457752 61916 61916 2 | 1 chr10 chr10:7518177-19547013 chr10:8518248-18546942 20.0001 10028648 65171 65171 3 | 2 chr10 chr10:17546674-36055585 chr10:18546943-34311856 20.0001 15764845 99213 99213 4 | 3 chr10 chr10:33311330-57544329 chr10:34311857-56460158 20 22148045 101611 101611 5 | 4 chr10 chr10:55460324-78683079 chr10:56460159-77682881 20.0227 21222424 118457 118457 6 | 5 chr10 chr10:75711076-95318121 chr10:77682882-94202471 20.0074 16519476 92960 92960 7 | 6 chr10 chr10:92907030-116594760 chr10:94202472-115594403 20.0107 21391710 108661 108661 8 | 7 chr10 chr10:114594481-127685323 chr10:115594404-126685254 20.0001 11090605 64590 64590 9 | 8 chr10 chr10:125684989-1000000000 chr10:126685255-1000000000 21.1057 8839047 60195 60195 10 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr11.txt: -------------------------------------------------------------------------------- 1 | 0 11 11:1-15156634 11:1-13373909 26.016 13286587 90001 90001 2 | 1 11 11:12373851-30780350 11:13373910-29305766 20.0002 15931795 93764 93764 3 | 2 11 11:27020973-59623187 11:29305767-57295956 20.0004 27990089 147540 147540 4 | 3 11 11:45951480-80055053 11:57295957-79054833 20.0181 21758683 112089 112089 5 | 4 11 11:78054607-102065668 11:79054834-100755924 20.0041 21700899 127563 127563 6 | 5 11 11:99755853-119724144 11:100755925-118724226 20.0001 17968103 96922 96922 7 | 6 11 11:117723548-1000000000 11:118724227-1000000000 32.1643 16222115 96373 96373 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr11_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr11 chr11:1-15156634 chr11:1-13373909 26.016 13286587 90001 90001 2 | 1 chr11 chr11:12373851-30780350 chr11:13373910-29305766 20.0002 15931795 93764 93764 3 | 2 chr11 chr11:27020973-59623187 chr11:29305767-57295956 20.0004 27990089 147540 147540 4 | 3 chr11 chr11:45951480-80055053 chr11:57295957-79054833 20.0181 21758683 112089 112089 5 | 4 chr11 chr11:78054607-102065668 chr11:79054834-100755924 20.0041 21700899 127563 127563 6 | 5 chr11 chr11:99755853-119724144 chr11:100755925-118724226 20.0001 17968103 96922 96922 7 | 6 chr11 chr11:117723548-1000000000 chr11:118724227-1000000000 32.1643 16222115 96373 96373 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr12.txt: -------------------------------------------------------------------------------- 1 | 0 12 12:1-12755179 12:1-11755379 25.178 11693716 72801 72801 2 | 1 12 12:10755641-26162581 12:11755380-25162630 20.0004 13406908 74772 74772 3 | 2 12 12:24162553-53089313 12:25162631-52089402 20.0001 26926554 148756 148756 4 | 3 12 12:50922710-70958009 12:52089403-69827160 20.015 17737592 93398 93398 5 | 4 12 12:68827088-93521703 12:69827161-92521665 20 22694448 114596 114596 6 | 5 12 12:91521289-108027468 12:92521666-106622919 20.0248 14101193 77467 77467 7 | 6 12 12:105622524-123143965 12:106622920-121954804 20.0046 15331782 79361 79361 8 | 7 12 12:120858382-1000000000 12:121954805-1000000000 29.5206 11886727 78822 78822 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr12_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr12 chr12:1-12755179 chr12:1-11755379 25.178 11693716 72801 72801 2 | 1 chr12 chr12:10755641-26162581 chr12:11755380-25162630 20.0004 13406908 74772 74772 3 | 2 chr12 chr12:24162553-53089313 chr12:25162631-52089402 20.0001 26926554 148756 148756 4 | 3 chr12 chr12:50922710-70958009 chr12:52089403-69827160 20.015 17737592 93398 93398 5 | 4 chr12 chr12:68827088-93521703 chr12:69827161-92521665 20 22694448 114596 114596 6 | 5 chr12 chr12:91521289-108027468 chr12:92521666-106622919 20.0248 14101193 77467 77467 7 | 6 chr12 chr12:105622524-123143965 chr12:106622920-121954804 20.0046 15331782 79361 79361 8 | 7 chr12 chr12:120858382-1000000000 chr12:121954805-1000000000 29.5206 11886727 78822 78822 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr13.txt: -------------------------------------------------------------------------------- 1 | 0 13 13:1-29671030 13:1-28670949 20.3365 9650847 67801 67801 2 | 1 13 13:27670942-41950104 13:28670950-40950122 20.0021 12279071 69887 69887 3 | 2 13 13:39950178-66067113 13:40950123-63975743 20 23025505 116094 116094 4 | 3 13 13:62072342-87802737 13:63975744-85863809 20.0005 21887969 123282 123282 5 | 4 13 13:84149716-105064739 13:85863810-104064798 20 18200811 101755 101755 6 | 5 13 13:103064492-1000000000 13:104064799-1000000000 25.3652 11044951 73709 73709 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr13_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr13 chr13:1-29671030 chr13:1-28670949 20.3365 9650847 67801 67801 2 | 1 chr13 chr13:27670942-41950104 chr13:28670950-40950122 20.0021 12279071 69887 69887 3 | 2 chr13 chr13:39950178-66067113 chr13:40950123-63975743 20 23025505 116094 116094 4 | 3 chr13 chr13:62072342-87802737 chr13:63975744-85863809 20.0005 21887969 123282 123282 5 | 4 chr13 chr13:84149716-105064739 chr13:85863810-104064798 20 18200811 101755 101755 6 | 5 chr13 chr13:103064492-1000000000 chr13:104064799-1000000000 25.3652 11044951 73709 73709 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr14.txt: -------------------------------------------------------------------------------- 1 | 0 14 14:1-28821094 14:1-27532328 20.0014 8532233 47495 47495 2 | 1 14 14:26532175-45844724 14:27532329-44433758 20.0006 16901384 96094 96094 3 | 2 14 14:43137218-66397327 14:44433759-65221970 20.0016 20787982 113098 113098 4 | 3 14 14:63760158-85861366 14:65221971-84511643 20.0001 19289002 105090 105090 5 | 4 14 14:83341114-97698501 14:84511644-96698477 20.002 12186138 74179 74179 6 | 5 14 14:95698571-1000000000 14:96698478-1000000000 20.1812 10590715 67755 67755 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr14_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr14 chr14:1-28821094 chr14:1-27532328 20.0014 8532233 47495 47495 2 | 1 chr14 chr14:26532175-45844724 chr14:27532329-44433758 20.0006 16901384 96094 96094 3 | 2 chr14 chr14:43137218-66397327 chr14:44433759-65221970 20.0016 20787982 113098 113098 4 | 3 chr14 chr14:63760158-85861366 chr14:65221971-84511643 20.0001 19289002 105090 105090 5 | 4 chr14 chr14:83341114-97698501 chr14:84511644-96698477 20.002 12186138 74179 74179 6 | 5 chr14 chr14:95698571-1000000000 chr14:96698478-1000000000 20.1812 10590715 67755 67755 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr15.txt: -------------------------------------------------------------------------------- 1 | 0 15 15:1-25757753 15:1-24757564 21.8632 4757452 20001 20001 2 | 1 15 15:23757576-34571924 15:24757565-33571683 20 8814011 49529 49529 3 | 2 15 15:32569669-51647307 15:33571684-49744508 20 16172730 84114 84114 4 | 3 15 15:48389935-68042246 15:49744509-67042187 20.0074 17297561 100536 100536 5 | 4 15 15:66041722-87808938 15:67042188-86808871 20.0002 19766623 95570 95570 6 | 5 15 15:85808547-96196672 15:86808872-95196726 20 8387706 57007 57007 7 | 6 15 15:94196362-1000000000 15:95196727-1000000000 20.0044 7324184 48834 48834 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr15_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr15 chr15:1-25757753 chr15:1-24757564 21.8632 4757452 20001 20001 2 | 1 chr15 chr15:23757576-34571924 chr15:24757565-33571683 20 8814011 49529 49529 3 | 2 chr15 chr15:32569669-51647307 chr15:33571684-49744508 20 16172730 84114 84114 4 | 3 chr15 chr15:48389935-68042246 chr15:49744509-67042187 20.0074 17297561 100536 100536 5 | 4 chr15 chr15:66041722-87808938 chr15:67042188-86808871 20.0002 19766623 95570 95570 6 | 5 chr15 chr15:85808547-96196672 chr15:86808872-95196726 20 8387706 57007 57007 7 | 6 chr15 chr15:94196362-1000000000 chr15:95196727-1000000000 20.0044 7324184 48834 48834 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr16.txt: -------------------------------------------------------------------------------- 1 | 0 16 16:1-10100862 16:1-9100482 21.8763 9040220 77201 77201 2 | 1 16 16:8100570-23807644 16:9100483-22807639 22.585 13707015 77201 77201 3 | 2 16 16:21807654-53443054 16:22807640-52442981 20.0021 29635084 82723 82723 4 | 3 16 16:51442679-68679770 16:52442982-66156947 21.2552 13713720 77201 77201 5 | 4 16 16:65156593-82170283 16:66156948-81170128 20 15013093 92421 92421 6 | 5 16 16:80170111-1000000000 16:81170129-1000000000 28.4871 9122604 82353 82353 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr16_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr16 chr16:1-10100862 chr16:1-9100482 21.8763 9040220 77201 77201 2 | 1 chr16 chr16:8100570-23807644 chr16:9100483-22807639 22.585 13707015 77201 77201 3 | 2 chr16 chr16:21807654-53443054 chr16:22807640-52442981 20.0021 29635084 82723 82723 4 | 3 chr16 chr16:51442679-68679770 chr16:52442982-66156947 21.2552 13713720 77201 77201 5 | 4 chr16 chr16:65156593-82170283 chr16:66156948-81170128 20 15013093 92421 92421 6 | 5 chr16 chr16:80170111-1000000000 chr16:81170129-1000000000 28.4871 9122604 82353 82353 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr17.txt: -------------------------------------------------------------------------------- 1 | 0 17 17:1-10055052 17:1-9054918 21.4397 9054078 58301 58301 2 | 1 17 17:8054876-19481161 17:9054919-18394435 22.325 9339501 58301 58301 3 | 2 17 17:17254274-40471515 17:18394436-39471298 20.0001 21076798 85155 85155 4 | 3 17 17:38069274-60302340 17:39471299-59302020 20.0004 19830635 91931 91931 5 | 4 17 17:56347945-72445759 17:59302021-71445948 20.0001 12143685 64001 64001 6 | 5 17 17:70445988-1000000000 17:71445949-1000000000 24.9526 9744155 65142 65142 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr17_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr17 chr17:1-10055052 chr17:1-9054918 21.4397 9054078 58301 58301 2 | 1 chr17 chr17:8054876-19481161 chr17:9054919-18394435 22.325 9339501 58301 58301 3 | 2 chr17 chr17:17254274-40471515 chr17:18394436-39471298 20.0001 21076798 85155 85155 4 | 3 chr17 chr17:38069274-60302340 chr17:39471299-59302020 20.0004 19830635 91931 91931 5 | 4 chr17 chr17:56347945-72445759 chr17:59302021-71445948 20.0001 12143685 64001 64001 6 | 5 chr17 chr17:70445988-1000000000 chr17:71445949-1000000000 24.9526 9744155 65142 65142 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr18.txt: -------------------------------------------------------------------------------- 1 | 0 18 18:1-11763020 18:1-10763069 32.497 10752363 70901 70901 2 | 1 18 18:9763009-32611261 18:10763070-31061328 20.0016 20298042 93940 93940 3 | 2 18 18:29727137-54245002 18:31061329-53045933 20.0001 21984265 115342 115342 4 | 3 18 18:51062008-67598361 18:53045934-66598413 20 13552064 80110 80110 5 | 4 18 18:65598307-1000000000 18:66598414-1000000000 25.2106 11418484 77385 77385 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr18_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr18 chr18:1-11763020 chr18:1-10763069 32.497 10752363 70901 70901 2 | 1 chr18 chr18:9763009-32611261 chr18:10763070-31061328 20.0016 20298042 93940 93940 3 | 2 chr18 chr18:29727137-54245002 chr18:31061329-53045933 20.0001 21984265 115342 115342 4 | 3 chr18 chr18:51062008-67598361 chr18:53045934-66598413 20 13552064 80110 80110 5 | 4 chr18 chr18:65598307-1000000000 chr18:66598414-1000000000 25.2106 11418484 77385 77385 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr19.txt: -------------------------------------------------------------------------------- 1 | 0 19 19:1-8633943 19:1-7633898 24.2963 7563901 53101 53101 2 | 1 19 19:6633620-19035200 19:7633899-18035134 20.0015 10401177 62385 62385 3 | 2 19 19:17035034-40853559 19:18035135-39853593 20 21818346 114168 114168 4 | 3 19 19:38853659-52417336 19:39853594-51417481 20.0015 11563669 69577 69577 5 | 4 19 19:50417490-1000000000 19:51417482-1000000000 23.4708 7701149 58546 58546 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr19_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr19 chr19:1-8633943 chr19:1-7633898 24.2963 7563901 53101 53101 2 | 1 chr19 chr19:6633620-19035200 chr19:7633899-18035134 20.0015 10401177 62385 62385 3 | 2 chr19 chr19:17035034-40853559 chr19:18035135-39853593 20 21818346 114168 114168 4 | 3 chr19 chr19:38853659-52417336 chr19:39853594-51417481 20.0015 11563669 69577 69577 5 | 4 chr19 chr19:50417490-1000000000 chr19:51417482-1000000000 23.4708 7701149 58546 58546 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr1_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr1 chr1:1-11260928 chr1:1-10260949 21.7737 10249915 63301 63301 2 | 1 chr1 chr1:9260941-21848075 chr1:10260950-20790583 22.844 10529595 63301 63301 3 | 2 chr1 chr1:19790568-38584749 chr1:20790584-37584948 20.001 16794085 83762 83762 4 | 3 chr1 chr1:36585077-59164140 chr1:37584949-58164021 20.0011 20578804 102320 102320 5 | 4 chr1 chr1:57163872-77605540 chr1:58164022-76605450 20.0004 18441421 95420 95420 6 | 5 chr1 chr1:75102467-97725067 chr1:76605451-96129863 20 19524328 102298 102298 7 | 6 chr1 chr1:95129908-115924308 chr1:96129864-114851791 20.0015 18721829 101054 101054 8 | 7 chr1 chr1:113822100-155668700 chr1:114851792-154668365 20.0005 39816406 73493 73493 9 | 8 chr1 chr1:153328625-169178572 chr1:154668366-168178392 20.0009 13509857 75473 75473 10 | 9 chr1 chr1:167178161-192552969 chr1:168178393-191093878 20.0013 22915401 122938 122938 11 | 10 chr1 chr1:188766072-209809320 chr1:191093879-208809389 20.0042 17715334 90633 90633 12 | 11 chr1 chr1:207809058-229156998 chr1:208809390-228083173 20 19273651 105052 105052 13 | 12 chr1 chr1:226307579-239597345 chr1:228083174-238597291 20.2314 10514087 63301 63301 14 | 13 chr1 chr1:237597292-1000000000 chr1:238597292-1000000000 21.4315 10643236 69423 69423 15 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr2.txt: -------------------------------------------------------------------------------- 1 | 0 2 2:1-11337564 2:1-10337487 26.4789 10327210 67201 67201 2 | 1 2 2:9337329-24121957 2:10337488-23121931 20.0014 12784357 74641 74641 3 | 2 2 2:21856846-41812000 2:23121932-40558388 20 17436283 100933 100933 4 | 3 2 2:39522147-60594737 2:40558389-59585690 20.0013 19027207 117520 117520 5 | 4 2 2:58566292-79219575 2:59585691-77935598 20.0002 18349769 96665 96665 6 | 5 2 2:76935623-108933628 2:77935599-107795434 20.0018 29859612 122601 122601 7 | 6 2 2:106653217-129667158 2:107795435-128667131 20 20871581 110307 110307 8 | 7 2 2:127667149-151463554 2:128667132-150463323 20.0011 21796142 114511 114511 9 | 8 2 2:149201775-174136307 2:150463324-173136324 20.0078 22672944 115787 115787 10 | 9 2 2:172065655-199175839 2:173136325-197309620 20.019 24173078 122270 122270 11 | 10 2 2:195966040-218982611 2:197309621-217982386 20.004 20672539 101485 101485 12 | 11 2 2:216982370-232859047 2:217982387-231858946 20.0001 13876419 77063 77063 13 | 12 2 2:230858108-1000000000 2:231858947-1000000000 22.3964 11326798 73166 73166 14 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr20.txt: -------------------------------------------------------------------------------- 1 | 0 20 20:1-9186946 20:1-8186480 23.6882 8125382 52001 52001 2 | 1 20 20:7186412-20260906 20:8186481-19260895 20.0002 11074393 63804 63804 3 | 2 20 20:18260846-44037368 20:19260896-43037365 20.0017 23776449 103331 103331 4 | 3 20 20:42036862-55054840 20:43037366-54054692 20.0028 11017299 63443 63443 5 | 4 20 20:53054665-1000000000 20:54054693-1000000000 24.5962 8910248 58103 58103 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr20_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr20 chr20:1-9186946 chr20:1-8186480 23.6882 8125382 52001 52001 2 | 1 chr20 chr20:7186412-20260906 chr20:8186481-19260895 20.0002 11074393 63804 63804 3 | 2 chr20 chr20:18260846-44037368 chr20:19260896-43037365 20.0017 23776449 103331 103331 4 | 3 chr20 chr20:42036862-55054840 chr20:43037366-54054692 20.0028 11017299 63443 63443 5 | 4 chr20 chr20:53054665-1000000000 chr20:54054693-1000000000 24.5962 8910248 58103 58103 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr21.txt: -------------------------------------------------------------------------------- 1 | 0 21 21:1-24660183 21:1-23522094 20.1464 14110663 63101 63101 2 | 1 21 21:22522067-38529142 21:23522095-37529091 20 14006955 83840 83840 3 | 2 21 21:36529043-1000000000 21:37529092-1000000000 22.6729 10590522 68878 68878 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr21_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr21 chr21:1-24660183 chr21:1-23522094 20.1464 14110663 63101 63101 2 | 1 chr21 chr21:22522067-38529142 chr21:23522095-37529091 20 14006955 83840 83840 3 | 2 chr21 chr21:36529043-1000000000 chr21:37529092-1000000000 22.6729 10590522 68878 68878 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr22.txt: -------------------------------------------------------------------------------- 1 | 0 22 22:1-28487474 22:1-27487250 29.6893 11437127 69601 69601 2 | 1 22 22:26487217-42871418 22:27487251-40098227 20.0164 12610931 71511 71511 3 | 2 22 22:39097415-1000000000 22:40098228-1000000000 24.4319 11145899 76042 76042 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr22_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr22 chr22:1-28487474 chr22:1-27487250 29.6893 11437127 69601 69601 2 | 1 chr22 chr22:26487217-42871418 chr22:27487251-40098227 20.0164 12610931 71511 71511 3 | 2 chr22 chr22:39097415-1000000000 chr22:40098228-1000000000 24.4319 11145899 76042 76042 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr2_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr2 chr2:1-11337564 chr2:1-10337487 26.4789 10327210 67201 67201 2 | 1 chr2 chr2:9337329-24121957 chr2:10337488-23121931 20.0014 12784357 74641 74641 3 | 2 chr2 chr2:21856846-41812000 chr2:23121932-40558388 20 17436283 100933 100933 4 | 3 chr2 chr2:39522147-60594737 chr2:40558389-59585690 20.0013 19027207 117520 117520 5 | 4 chr2 chr2:58566292-79219575 chr2:59585691-77935598 20.0002 18349769 96665 96665 6 | 5 chr2 chr2:76935623-108933628 chr2:77935599-107795434 20.0018 29859612 122601 122601 7 | 6 chr2 chr2:106653217-129667158 chr2:107795435-128667131 20 20871581 110307 110307 8 | 7 chr2 chr2:127667149-151463554 chr2:128667132-150463323 20.0011 21796142 114511 114511 9 | 8 chr2 chr2:149201775-174136307 chr2:150463324-173136324 20.0078 22672944 115787 115787 10 | 9 chr2 chr2:172065655-199175839 chr2:173136325-197309620 20.019 24173078 122270 122270 11 | 10 chr2 chr2:195966040-218982611 chr2:197309621-217982386 20.004 20672539 101485 101485 12 | 11 chr2 chr2:216982370-232859047 chr2:217982387-231858946 20.0001 13876419 77063 77063 13 | 12 chr2 chr2:230858108-1000000000 chr2:231858947-1000000000 22.3964 11326798 73166 73166 14 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr3.txt: -------------------------------------------------------------------------------- 1 | 0 3 3:1-9397876 3:1-8397535 20.9088 8337244 66101 66101 2 | 1 3 3:7397549-23071446 3:8397536-22071342 20.0005 13673663 79619 79619 3 | 2 3 3:21071214-39355906 3:22071343-38355665 20.0014 16284224 95363 95363 4 | 3 3 3:36832371-62993739 3:38355666-61993472 20.0003 23637736 115499 115499 5 | 4 3 3:60992932-75032610 3:61993473-74032487 20.0016 12038983 71199 71199 6 | 5 3 3:73032241-112354837 3:74032488-111330772 20.0001 37298205 187377 187377 7 | 6 3 3:109996447-131706532 3:111330773-130500521 20.0065 19169670 102952 102952 8 | 7 3 3:129087506-150530065 3:130500522-149488226 20.0001 18987679 102063 102063 9 | 8 3 3:148487913-174017168 3:149488227-173017171 20.0061 23528903 128622 128622 10 | 9 3 3:172017149-188123154 3:173017172-187123088 20.0001 14105881 74375 74375 11 | 10 3 3:186123028-1000000000 3:187123089-1000000000 22.5294 10839284 71681 71681 12 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr3_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr3 chr3:1-9397876 chr3:1-8397535 20.9088 8337244 66101 66101 2 | 1 chr3 chr3:7397549-23071446 chr3:8397536-22071342 20.0005 13673663 79619 79619 3 | 2 chr3 chr3:21071214-39355906 chr3:22071343-38355665 20.0014 16284224 95363 95363 4 | 3 chr3 chr3:36832371-62993739 chr3:38355666-61993472 20.0003 23637736 115499 115499 5 | 4 chr3 chr3:60992932-75032610 chr3:61993473-74032487 20.0016 12038983 71199 71199 6 | 5 chr3 chr3:73032241-112354837 chr3:74032488-111330772 20.0001 37298205 187377 187377 7 | 6 chr3 chr3:109996447-131706532 chr3:111330773-130500521 20.0065 19169670 102952 102952 8 | 7 chr3 chr3:129087506-150530065 chr3:130500522-149488226 20.0001 18987679 102063 102063 9 | 8 chr3 chr3:148487913-174017168 chr3:149488227-173017171 20.0061 23528903 128622 128622 10 | 9 chr3 chr3:172017149-188123154 chr3:173017172-187123088 20.0001 14105881 74375 74375 11 | 10 chr3 chr3:186123028-1000000000 chr3:187123089-1000000000 22.5294 10839284 71681 71681 12 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr4.txt: -------------------------------------------------------------------------------- 1 | 0 4 4:1-11334837 4:1-10334820 25.8662 10324565 81101 81101 2 | 1 4 4:9177282-26810957 4:10334821-25810526 20.0028 15475636 93937 93937 3 | 2 4 4:24810496-42637522 4:25810527-41637534 20.003 15826904 96907 96907 4 | 3 4 4:40637508-72470436 4:41637535-71470420 20.0005 29832849 161961 161961 5 | 4 4 4:69741025-94235081 4:71470421-92124622 20.0001 20654136 113116 113116 6 | 5 4 4:90548703-117559702 4:92124623-115665694 20.0033 23540862 125017 125017 7 | 6 4 4:114663071-141834561 4:115665695-140834519 20.0099 25168673 144091 144091 8 | 7 4 4:139834504-163324468 4:140834520-162276693 20.0007 21442127 113175 113175 9 | 8 4 4:161276540-179759920 4:162276694-178759940 20.0009 16483154 100753 100753 10 | 9 4 4:177759820-1000000000 4:178759941-1000000000 28.7915 12283884 88441 88441 11 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr4_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr4 chr4:1-11334837 chr4:1-10334820 25.8662 10324565 81101 81101 2 | 1 chr4 chr4:9177282-26810957 chr4:10334821-25810526 20.0028 15475636 93937 93937 3 | 2 chr4 chr4:24810496-42637522 chr4:25810527-41637534 20.003 15826904 96907 96907 4 | 3 chr4 chr4:40637508-72470436 chr4:41637535-71470420 20.0005 29832849 161961 161961 5 | 4 chr4 chr4:69741025-94235081 chr4:71470421-92124622 20.0001 20654136 113116 113116 6 | 5 chr4 chr4:90548703-117559702 chr4:92124623-115665694 20.0033 23540862 125017 125017 7 | 6 chr4 chr4:114663071-141834561 chr4:115665695-140834519 20.0099 25168673 144091 144091 8 | 7 chr4 chr4:139834504-163324468 chr4:140834520-162276693 20.0007 21442127 113175 113175 9 | 8 chr4 chr4:161276540-179759920 chr4:162276694-178759940 20.0009 16483154 100753 100753 10 | 9 chr4 chr4:177759820-1000000000 chr4:178759941-1000000000 28.7915 12283884 88441 88441 11 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr5.txt: -------------------------------------------------------------------------------- 1 | 0 5 5:1-9647624 5:1-8647344 20.0002 8637063 62225 62225 2 | 1 5 5:7647489-26122142 5:8647345-24847752 20.0004 16200154 94293 94293 3 | 2 5 5:23847593-50162186 5:24847753-41433088 20.0013 16585271 99553 99553 4 | 3 5 5:39455738-72660785 5:41433089-71660675 20.0002 30227388 130612 130612 5 | 4 5 5:70660386-90795803 5:71660676-89367183 20 17706318 89543 89543 6 | 5 5 5:87779350-116975966 5:89367184-115976022 20.0114 26608754 148206 148206 7 | 6 5 5:114975951-139235960 5:115976023-136944014 20.0029 20967820 117163 117163 8 | 7 5 5:135352495-155451305 5:136944015-154378525 20 17434254 87925 87925 9 | 8 5 5:153083269-170819046 5:154378526-169819007 20.0094 15440335 83592 83592 10 | 9 5 5:168819006-1000000000 5:169819008-1000000000 24.2689 11085681 65202 65202 11 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr5_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr5 chr5:1-9647624 chr5:1-8647344 20.0002 8637063 62225 62225 2 | 1 chr5 chr5:7647489-26122142 chr5:8647345-24847752 20.0004 16200154 94293 94293 3 | 2 chr5 chr5:23847593-50162186 chr5:24847753-41433088 20.0013 16585271 99553 99553 4 | 3 chr5 chr5:39455738-72660785 chr5:41433089-71660675 20.0002 30227388 130612 130612 5 | 4 chr5 chr5:70660386-90795803 chr5:71660676-89367183 20 17706318 89543 89543 6 | 5 chr5 chr5:87779350-116975966 chr5:89367184-115976022 20.0114 26608754 148206 148206 7 | 6 chr5 chr5:114975951-139235960 chr5:115976023-136944014 20.0029 20967820 117163 117163 8 | 7 chr5 chr5:135352495-155451305 chr5:136944015-154378525 20 17434254 87925 87925 9 | 8 chr5 chr5:153083269-170819046 chr5:154378526-169819007 20.0094 15440335 83592 83592 10 | 9 chr5 chr5:168819006-1000000000 chr5:169819008-1000000000 24.2689 11085681 65202 65202 11 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr6.txt: -------------------------------------------------------------------------------- 1 | 0 6 6:1-13737604 6:1-12737142 27.9406 12673043 81401 81401 2 | 1 6 6:11737090-30762542 6:12737143-27771117 20 15033844 88655 88655 3 | 2 6 6:25336239-45628404 6:27771118-44463191 20.0038 16691984 131889 131889 4 | 3 6 6:43462988-80137514 6:44463192-78166639 20.0041 33703331 177562 177562 5 | 4 6 6:76628275-105494700 6:78166640-104201440 20 26034483 144734 144734 6 | 5 6 6:102635359-127356210 6:104201441-125669176 20.0023 21467405 114668 114668 7 | 6 6 6:124669053-145141088 6:125669177-144141040 20.005 18471775 95553 95553 8 | 7 6 6:143140653-159101927 6:144141041-158101807 20.4506 13960727 81401 81401 9 | 8 6 6:157101165-1000000000 6:158101808-1000000000 23.6274 12951596 87236 87236 10 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr6_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr6 chr6:1-13737604 chr6:1-12737142 27.9406 12673043 81401 81401 2 | 1 chr6 chr6:11737090-30762542 chr6:12737143-27771117 20 15033844 88655 88655 3 | 2 chr6 chr6:25336239-45628404 chr6:27771118-44463191 20.0038 16691984 131889 131889 4 | 3 chr6 chr6:43462988-80137514 chr6:44463192-78166639 20.0041 33703331 177562 177562 5 | 4 chr6 chr6:76628275-105494700 chr6:78166640-104201440 20 26034483 144734 144734 6 | 5 chr6 chr6:102635359-127356210 chr6:104201441-125669176 20.0023 21467405 114668 114668 7 | 6 chr6 chr6:124669053-145141088 chr6:125669177-144141040 20.005 18471775 95553 95553 8 | 7 chr6 chr6:143140653-159101927 chr6:144141041-158101807 20.4506 13960727 81401 81401 9 | 8 chr6 chr6:157101165-1000000000 chr6:158101808-1000000000 23.6274 12951596 87236 87236 10 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr7.txt: -------------------------------------------------------------------------------- 1 | 0 7 7:1-11285063 7:1-10094969 20 10080109 82230 82230 2 | 1 7 7:9094985-23510530 7:10094970-22510170 20.0087 12415019 87317 87317 3 | 2 7 7:21509948-38440882 7:22510171-37440410 20.0017 14930066 83889 83889 4 | 3 7 7:36440050-63083909 7:37440411-55770194 20 18329696 111128 111128 5 | 4 7 7:54770139-83454946 7:55770195-82375710 20.0007 26605465 129758 129758 6 | 5 7 7:81375692-106951862 7:82375711-105951747 20.0012 23576005 122017 122017 7 | 6 7 7:104951552-132468679 7:105951748-131468319 20.0045 25516542 125486 125486 8 | 7 7 7:130468190-148815794 7:131468320-147815859 20.0006 16347448 88634 88634 9 | 8 7 7:146815910-1000000000 7:147815860-1000000000 27.1808 11312617 81259 81259 10 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr7_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr7 chr7:1-11285063 chr7:1-10094969 20 10080109 82230 82230 2 | 1 chr7 chr7:9094985-23510530 chr7:10094970-22510170 20.0087 12415019 87317 87317 3 | 2 chr7 chr7:21509948-38440882 chr7:22510171-37440410 20.0017 14930066 83889 83889 4 | 3 chr7 chr7:36440050-63083909 chr7:37440411-55770194 20 18329696 111128 111128 5 | 4 chr7 chr7:54770139-83454946 chr7:55770195-82375710 20.0007 26605465 129758 129758 6 | 5 chr7 chr7:81375692-106951862 chr7:82375711-105951747 20.0012 23576005 122017 122017 7 | 6 chr7 chr7:104951552-132468679 chr7:105951748-131468319 20.0045 25516542 125486 125486 8 | 7 chr7 chr7:130468190-148815794 chr7:131468320-147815859 20.0006 16347448 88634 88634 9 | 8 chr7 chr7:146815910-1000000000 chr7:147815860-1000000000 27.1808 11312617 81259 81259 10 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr8.txt: -------------------------------------------------------------------------------- 1 | 0 8 8:1-9902198 8:1-8901880 20.0001 8890090 93714 93714 2 | 1 8 8:7901242-20328922 8:8901881-19328724 21.1058 10426786 91901 91901 3 | 2 8 8:18328704-37037999 8:19328725-34791758 20.892 15462936 91901 91901 4 | 3 8 8:32178468-67407784 8:34791759-66027031 20.004 31235025 145469 145469 5 | 4 8 8:63915482-92873618 8:66027032-90639707 20.0018 24612200 130379 130379 6 | 5 8 8:89083979-116252026 8:90639708-114483392 20 23843271 118576 118576 7 | 6 8 8:110829096-131744501 8:114483393-130744438 22.0806 16260897 91901 91901 8 | 7 8 8:129744385-1000000000 8:130744439-1000000000 23.899 15559331 96261 96261 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr8_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr8 chr8:1-9902198 chr8:1-8901880 20.0001 8890090 93714 93714 2 | 1 chr8 chr8:7901242-20328922 chr8:8901881-19328724 21.1058 10426786 91901 91901 3 | 2 chr8 chr8:18328704-37037999 chr8:19328725-34791758 20.892 15462936 91901 91901 4 | 3 chr8 chr8:32178468-67407784 chr8:34791759-66027031 20.004 31235025 145469 145469 5 | 4 chr8 chr8:63915482-92873618 chr8:66027032-90639707 20.0018 24612200 130379 130379 6 | 5 chr8 chr8:89083979-116252026 chr8:90639708-114483392 20 23843271 118576 118576 7 | 6 chr8 chr8:110829096-131744501 chr8:114483393-130744438 22.0806 16260897 91901 91901 8 | 7 chr8 chr8:129744385-1000000000 chr8:130744439-1000000000 23.899 15559331 96261 96261 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr9.txt: -------------------------------------------------------------------------------- 1 | 0 9 9:1-9546722 9:1-8546654 20.0003 8536179 66830 66830 2 | 1 9 9:7546541-20690244 9:8546655-19690095 20.0004 11143398 82333 82333 3 | 2 9 9:18690007-37341344 9:19690096-36340829 20 16650585 102180 102180 4 | 3 9 9:34703177-82723386 9:36340830-81723487 20.007 45382430 87944 87944 5 | 4 9 9:80723578-99226681 9:81723488-98226351 20 16502703 91651 91651 6 | 5 9 9:96670132-116676253 9:98226352-115676329 20.0213 17449820 100123 100123 7 | 6 9 9:114676308-132033654 9:115676330-130897750 20.0006 15221129 77737 77737 8 | 7 9 9:129621999-1000000000 9:130897751-1000000000 26.348 10248755 63345 63345 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_20cM/chunks_chr9_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr9 chr9:1-9546722 chr9:1-8546654 20.0003 8536179 66830 66830 2 | 1 chr9 chr9:7546541-20690244 chr9:8546655-19690095 20.0004 11143398 82333 82333 3 | 2 chr9 chr9:18690007-37341344 chr9:19690096-36340829 20 16650585 102180 102180 4 | 3 chr9 chr9:34703177-82723386 chr9:36340830-81723487 20.007 45382430 87944 87944 5 | 4 chr9 chr9:80723578-99226681 chr9:81723488-98226351 20 16502703 91651 91651 6 | 5 chr9 chr9:96670132-116676253 chr9:98226352-115676329 20.0213 17449820 100123 100123 7 | 6 chr9 chr9:114676308-132033654 chr9:115676330-130897750 20.0006 15221129 77737 77737 8 | 7 chr9 chr9:129621999-1000000000 chr9:130897751-1000000000 26.348 10248755 63345 63345 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr1.txt: -------------------------------------------------------------------------------- 1 | 0 1 1:1-22911834 1:1-18911769 40.1081 18900714 114801 114801 2 | 1 1 1:14911320-59138636 1:18911770-55138615 40 36226740 179618 179618 3 | 2 1 1:51138382-94902344 1:55138616-90902056 40 35763157 191473 191473 4 | 3 1 1:86902255-152605019 1:90902057-148604959 40.0016 57702675 172274 172274 5 | 4 1 1:144604552-188625045 1:148604960-184624914 40.0006 36019885 187754 187754 6 | 5 1 1:180624906-226072665 1:184624915-222072318 40.0001 37447319 200689 200689 7 | 6 1 1:218072223-1000000000 1:222072319-1000000000 46.1921 27168205 165160 165160 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr10.txt: -------------------------------------------------------------------------------- 1 | 0 10 10:1-29123012 10:1-25123093 47.3943 25062511 166301 166301 2 | 1 10 10:21122976-69477414 10:25123094-65477408 40.0037 40354176 212117 212117 3 | 2 10 10:61477077-105767809 10:65477409-101767737 40.0001 36290266 198975 198975 4 | 3 10 10:97767618-1000000000 10:101767738-1000000000 53.7722 33756624 195381 195381 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr10_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr10 chr10:1-29123012 chr10:1-25123093 47.3943 25062511 166301 166301 2 | 1 chr10 chr10:21122976-69477414 chr10:25123094-65477408 40.0037 40354176 212117 212117 3 | 2 chr10 chr10:61477077-105767809 chr10:65477409-101767737 40.0001 36290266 198975 198975 4 | 3 chr10 chr10:97767618-1000000000 chr10:101767738-1000000000 53.7722 33756624 195381 195381 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr11.txt: -------------------------------------------------------------------------------- 1 | 0 11 11:1-40878111 11:1-36877803 55.8592 36790472 223401 223401 2 | 1 11 11:32877862-95536724 11:36877804-91536730 40.0011 54658831 292212 292212 3 | 2 11 11:87536662-1000000000 11:91536731-1000000000 62.3581 43409688 248639 248639 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr11_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr11 chr11:1-40878111 chr11:1-36877803 55.8592 36790472 223401 223401 2 | 1 chr11 chr11:32877862-95536724 chr11:36877804-91536730 40.0011 54658831 292212 292212 3 | 2 chr11 chr11:87536662-1000000000 chr11:91536731-1000000000 62.3581 43409688 248639 248639 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr12.txt: -------------------------------------------------------------------------------- 1 | 0 12 12:1-27827452 12:1-23827496 42.614 23766040 140201 140201 2 | 1 12 12:19827475-72248423 12:23827497-68248262 40.0024 44420656 240902 240902 3 | 2 12 12:64248226-108960195 12:68248263-104960454 40 36711840 190664 190664 4 | 3 12 12:100960759-1000000000 12:104960455-1000000000 52.1335 28880849 168206 168206 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr12_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr12 chr12:1-27827452 chr12:1-23827496 42.614 23766040 140201 140201 2 | 1 chr12 chr12:19827475-72248423 chr12:23827497-68248262 40.0024 44420656 240902 240902 3 | 2 chr12 chr12:64248226-108960195 chr12:68248263-104960454 40 36711840 190664 190664 4 | 3 chr12 chr12:100960759-1000000000 chr12:104960455-1000000000 52.1335 28880849 168206 168206 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr13.txt: -------------------------------------------------------------------------------- 1 | 0 13 13:1-44892871 13:1-40892830 40.0001 21872681 137354 137354 2 | 1 13 13:36892617-89440410 13:40892831-85439965 40.0007 44547072 236383 236383 3 | 2 13 13:81439337-1000000000 13:85439966-1000000000 45.7077 29669877 178791 178791 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr13_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr13 chr13:1-44892871 chr13:1-40892830 40.0001 21872681 137354 137354 2 | 1 chr13 chr13:36892617-89440410 chr13:40892831-85439965 40.0007 44547072 236383 236383 3 | 2 chr13 chr13:81439337-1000000000 chr13:85439966-1000000000 45.7077 29669877 178791 178791 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr14.txt: -------------------------------------------------------------------------------- 1 | 0 14 14:1-48433265 14:1-44433162 40.0002 25433092 143578 143578 2 | 1 14 14:40433142-88471083 14:44433163-84471050 40.0006 40037833 217937 217937 3 | 2 14 14:80470872-1000000000 14:84471051-1000000000 40.2024 22818341 142196 142196 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr14_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr14 chr14:1-48433265 chr14:1-44433162 40.0002 25433092 143578 143578 2 | 1 chr14 chr14:40433142-88471083 chr14:44433163-84471050 40.0006 40037833 217937 217937 3 | 2 chr14 chr14:80470872-1000000000 chr14:84471051-1000000000 40.2024 22818341 142196 142196 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr15.txt: -------------------------------------------------------------------------------- 1 | 0 15 15:1-42338529 15:1-38338456 51.2276 18338292 97001 97001 2 | 1 15 15:34337671-78454795 15:38338457-74453807 40.0016 36115216 193018 193018 3 | 2 15 15:70453761-1000000000 15:74453808-1000000000 50.6564 28067238 165572 165572 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr15_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr15 chr15:1-42338529 chr15:1-38338456 51.2276 18338292 97001 97001 2 | 1 chr15 chr15:34337671-78454795 chr15:38338457-74453807 40.0016 36115216 193018 193018 3 | 2 chr15 chr15:70453761-1000000000 chr15:74453808-1000000000 50.6564 28067238 165572 165572 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr16.txt: -------------------------------------------------------------------------------- 1 | 0 16 16:1-25762795 16:1-21762992 42.9427 21702586 151701 151701 2 | 1 16 16:17763199-68192097 16:21762993-64192066 40.4209 42428814 151701 151701 3 | 2 16 16:60192011-1000000000 16:64192067-1000000000 50.8662 26100705 185698 185698 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr16_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr16 chr16:1-25762795 chr16:1-21762992 42.9427 21702586 151701 151701 2 | 1 chr16 chr16:17763199-68192097 chr16:21762993-64192066 40.4209 42428814 151701 151701 3 | 2 chr16 chr16:60192011-1000000000 chr16:64192067-1000000000 50.8662 26100705 185698 185698 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr17.txt: -------------------------------------------------------------------------------- 1 | 0 17 17:1-19017677 17:1-15017217 40.003 15016361 98690 98690 2 | 1 17 17:11017183-59274951 17:15017218-55274734 40.0004 40257481 179140 179140 3 | 2 17 17:51274626-1000000000 17:55274735-1000000000 48.7154 25915581 145001 145001 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr17_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr17 chr17:1-19017677 chr17:1-15017217 40.003 15016361 98690 98690 2 | 1 chr17 chr17:11017183-59274951 chr17:15017218-55274734 40.0004 40257481 179140 179140 3 | 2 chr17 chr17:51274626-1000000000 chr17:55274735-1000000000 48.7154 25915581 145001 145001 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr18.txt: -------------------------------------------------------------------------------- 1 | 0 18 18:1-43108152 18:1-39108132 58.1088 39097407 204101 204101 2 | 1 18 18:35107991-1000000000 18:39108133-1000000000 59.603 38908914 233577 233577 3 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr18_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr18 chr18:1-43108152 chr18:1-39108132 58.1088 39097407 204101 204101 2 | 1 chr18 chr18:35107991-1000000000 chr18:39108133-1000000000 59.603 38908914 233577 233577 3 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr19.txt: -------------------------------------------------------------------------------- 1 | 0 19 19:1-32654547 19:1-28654578 49.6114 28584557 165101 165101 2 | 1 19 19:22733211-1000000000 19:28654579-1000000000 58.162 30464168 192676 192676 3 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr19_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr19 chr19:1-32654547 chr19:1-28654578 49.6114 28584557 165101 165101 2 | 1 chr19 chr19:22733211-1000000000 chr19:28654579-1000000000 58.162 30464168 192676 192676 3 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr1_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr1 chr1:1-22911834 chr1:1-18911769 40.1081 18900714 114801 114801 2 | 1 chr1 chr1:14911320-59138636 chr1:18911770-55138615 40 36226740 179618 179618 3 | 2 chr1 chr1:51138382-94902344 chr1:55138616-90902056 40 35763157 191473 191473 4 | 3 chr1 chr1:86902255-152605019 chr1:90902057-148604959 40.0016 57702675 172274 172274 5 | 4 chr1 chr1:144604552-188625045 chr1:148604960-184624914 40.0006 36019885 187754 187754 6 | 5 chr1 chr1:180624906-226072665 chr1:184624915-222072318 40.0001 37447319 200689 200689 7 | 6 chr1 chr1:218072223-1000000000 chr1:222072319-1000000000 46.1921 27168205 165160 165160 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr2.txt: -------------------------------------------------------------------------------- 1 | 0 2 2:1-35101228 2:1-31101327 55.1546 31090887 180801 180801 2 | 1 2 2:27101281-72548895 2:31101328-68548710 40.0017 37447211 223435 223435 3 | 2 2 2:64548680-120415186 2:68548711-116414989 40.0581 47866272 215362 215362 4 | 3 2 2:112414888-164307264 2:116414990-160307218 40 43892219 233503 233503 5 | 4 2 2:156307153-211810668 2:160307219-207810641 40.0002 47503374 233567 233567 6 | 5 2 2:203810638-1000000000 2:207810642-1000000000 53.7296 35375164 207482 207482 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr20.txt: -------------------------------------------------------------------------------- 1 | 0 20 20:1-33568407 20:1-29568124 50.9997 29507025 156701 156701 2 | 1 20 20:24435409-1000000000 20:29568125-1000000000 57.294 33396842 183981 183981 3 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr20_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr20 chr20:1-33568407 chr20:1-29568124 50.9997 29507025 156701 156701 2 | 1 chr20 chr20:24435409-1000000000 chr20:29568125-1000000000 57.294 33396842 183981 183981 3 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr21.txt: -------------------------------------------------------------------------------- 1 | 0 21 21:1-1000000000 21:1-1000000000 62.8193 38708224 215819 215819 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr21_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr21 chr21:1-1000000000 chr21:1-1000000000 62.8193 38708224 215819 215819 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr22.txt: -------------------------------------------------------------------------------- 1 | 0 22 22:1-1000000000 22:1-1000000000 74.1398 35194048 217154 217154 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr22_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr22 chr22:1-1000000000 chr22:1-1000000000 74.1398 35194048 217154 217154 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr2_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr2 chr2:1-35101228 chr2:1-31101327 55.1546 31090887 180801 180801 2 | 1 chr2 chr2:27101281-72548895 chr2:31101328-68548710 40.0017 37447211 223435 223435 3 | 2 chr2 chr2:64548680-120415186 chr2:68548711-116414989 40.0581 47866272 215362 215362 4 | 3 chr2 chr2:112414888-164307264 chr2:116414990-160307218 40 43892219 233503 233503 5 | 4 chr2 chr2:156307153-211810668 chr2:160307219-207810641 40.0002 47503374 233567 233567 6 | 5 chr2 chr2:203810638-1000000000 chr2:207810642-1000000000 53.7296 35375164 207482 207482 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr3.txt: -------------------------------------------------------------------------------- 1 | 0 3 3:1-33021953 3:1-29021911 50.2151 28961688 189201 189201 2 | 1 3 3:25021768-71457419 3:29021912-67456429 40.005 38434400 201822 201822 3 | 2 3 3:63456486-123308997 3:67456430-119308990 40.0033 51852304 266641 266641 4 | 3 3 3:115309051-164580140 3:119308991-160580148 40.0081 41270949 221899 221899 5 | 4 3 3:156580033-1000000000 3:160580149-1000000000 53.2092 37382187 215288 215288 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr3_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr3 chr3:1-33021953 chr3:1-29021911 50.2151 28961688 189201 189201 2 | 1 chr3 chr3:25021768-71457419 chr3:29021912-67456429 40.005 38434400 201822 201822 3 | 2 chr3 chr3:63456486-123308997 chr3:67456430-119308990 40.0033 51852304 266641 266641 4 | 3 chr3 chr3:115309051-164580140 chr3:119308991-160580148 40.0081 41270949 221899 221899 5 | 4 chr3 chr3:156580033-1000000000 chr3:160580149-1000000000 53.2092 37382187 215288 215288 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr4.txt: -------------------------------------------------------------------------------- 1 | 0 4 4:1-29117426 4:1-25116924 44.323 25106554 170501 170501 2 | 1 4 4:21117009-72473462 4:25116925-68473385 40.0006 43356141 242398 242398 3 | 2 4 4:64473516-118309390 4:68473386-114309430 40.0051 45835695 250688 250688 4 | 3 4 4:110309570-164712155 4:114309431-160712081 40.0001 46402497 254930 254930 5 | 4 4 4:156712044-1000000000 4:160712082-1000000000 50.37 30331788 199982 199982 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr4_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr4 chr4:1-29117426 chr4:1-25116924 44.323 25106554 170501 170501 2 | 1 chr4 chr4:21117009-72473462 chr4:25116925-68473385 40.0006 43356141 242398 242398 3 | 2 chr4 chr4:64473516-118309390 chr4:68473386-114309430 40.0051 45835695 250688 250688 4 | 3 chr4 chr4:110309570-164712155 chr4:114309431-160712081 40.0001 46402497 254930 254930 5 | 4 chr4 chr4:156712044-1000000000 chr4:160712082-1000000000 50.37 30331788 199982 199982 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr5.txt: -------------------------------------------------------------------------------- 1 | 0 5 5:1-28847431 5:1-24847082 40 24837015 156514 156514 2 | 1 5 5:20846737-75599106 5:24847083-71599116 40 46751933 230007 230007 3 | 2 5 5:67598994-119975772 5:71599117-115975809 40.0011 44376451 237910 237910 4 | 3 5 5:111975843-158367407 5:115975810-154367466 40.0012 38391337 205034 205034 5 | 4 5 5:150367394-1000000000 5:154367467-1000000000 44.285 26537057 148849 148849 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr5_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr5 chr5:1-28847431 chr5:1-24847082 40 24837015 156514 156514 2 | 1 chr5 chr5:20846737-75599106 chr5:24847083-71599116 40 46751933 230007 230007 3 | 2 chr5 chr5:67598994-119975772 chr5:71599117-115975809 40.0011 44376451 237910 237910 4 | 3 chr5 chr5:111975843-158367407 chr5:115975810-154367466 40.0012 38391337 205034 205034 5 | 4 chr5 chr5:150367394-1000000000 chr5:154367467-1000000000 44.285 26537057 148849 148849 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr6.txt: -------------------------------------------------------------------------------- 1 | 0 6 6:1-36480437 6:1-32480391 50.2585 32416392 218801 218801 2 | 1 6 6:28480409-86590785 6:32480392-82590818 40.0113 50110356 289314 289314 3 | 2 6 6:78590763-133355545 6:82590819-129355441 40.0001 46764543 246843 246843 4 | 3 6 6:125354971-1000000000 6:129355442-1000000000 61.77 41697935 248141 248141 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr6_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr6 chr6:1-36480437 chr6:1-32480391 50.2585 32416392 218801 218801 2 | 1 chr6 chr6:28480409-86590785 chr6:32480392-82590818 40.0113 50110356 289314 289314 3 | 2 chr6 chr6:78590763-133355545 chr6:82590819-129355441 40.0001 46764543 246843 246843 4 | 3 chr6 chr6:125354971-1000000000 chr6:129355442-1000000000 61.77 41697935 248141 248141 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr7.txt: -------------------------------------------------------------------------------- 1 | 0 7 7:1-33780618 7:1-29780683 49.8565 29765807 210901 210901 2 | 1 7 7:25780670-78836857 7:29780684-74836824 40.0058 45055910 241213 241213 3 | 2 7 7:70836956-120885133 7:74836825-116885132 40.0001 42048127 217651 217651 4 | 3 7 7:112884978-1000000000 7:116885133-1000000000 57.3596 42243418 241953 241953 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr7_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr7 chr7:1-33780618 chr7:1-29780683 49.8565 29765807 210901 210901 2 | 1 chr7 chr7:25780670-78836857 chr7:29780684-74836824 40.0058 45055910 241213 241213 3 | 2 chr7 chr7:70836956-120885133 chr7:74836825-116885132 40.0001 42048127 217651 217651 4 | 3 chr7 chr7:112884978-1000000000 chr7:116885133-1000000000 57.3596 42243418 241953 241953 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr8.txt: -------------------------------------------------------------------------------- 1 | 0 8 8:1-23108099 8:1-19108069 40.8144 19096264 183901 183901 2 | 1 8 8:15108070-67395445 8:19108070-63395396 40 44287207 226842 226842 3 | 2 8 8:59395249-114140051 8:63395397-110139922 40 46744365 240810 240810 4 | 3 8 8:106139824-1000000000 8:110139923-1000000000 47.1906 36163793 208549 208549 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr8_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr8 chr8:1-23108099 chr8:1-19108069 40.8144 19096264 183901 183901 2 | 1 chr8 chr8:15108070-67395445 chr8:19108070-63395396 40 44287207 226842 226842 3 | 2 chr8 chr8:59395249-114140051 chr8:63395397-110139922 40 46744365 240810 240810 4 | 3 chr8 chr8:106139824-1000000000 chr8:110139923-1000000000 47.1906 36163793 208549 208549 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr9.txt: -------------------------------------------------------------------------------- 1 | 0 9 9:1-23690724 9:1-19690095 40.0007 19679589 149163 149163 2 | 1 9 9:15689759-85723521 9:19690096-81723487 40.007 62033237 190124 190124 3 | 2 9 9:77723452-119676236 9:81723488-115676329 40.0214 33952611 191774 191774 4 | 3 9 9:111676344-1000000000 9:115676330-1000000000 46.3523 25470239 141082 141082 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_40cM/chunks_chr9_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr9 chr9:1-23690724 chr9:1-19690095 40.0007 19679589 149163 149163 2 | 1 chr9 chr9:15689759-85723521 chr9:19690096-81723487 40.007 62033237 190124 190124 3 | 2 chr9 chr9:77723452-119676236 chr9:81723488-115676329 40.0214 33952611 191774 191774 4 | 3 chr9 chr9:111676344-1000000000 chr9:115676330-1000000000 46.3523 25470239 141082 141082 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr10.txt: -------------------------------------------------------------------------------- 1 | 0 10 10:1-3489813 10:1-2989483 4.81421 2928963 20401 20401 2 | 1 10 10:2489486-6142006 10:2989484-5641960 7.11313 2652446 20401 20401 3 | 2 10 10:5141918-8936908 10:5641961-8436840 7.70729 2794841 20401 20401 4 | 3 10 10:7935761-12384611 10:8436841-11831112 6.18974 3394235 20401 20401 5 | 4 10 10:11311387-15151348 10:11831113-14651033 7.28045 2819903 20401 20401 6 | 5 10 10:14137678-18349725 10:14651034-17557051 5.52615 2905940 20401 20401 7 | 6 10 10:16908152-21515516 10:17557052-20822158 4.00005 3265002 20762 20762 8 | 7 10 10:19993563-25245188 10:20822159-24694812 4.01691 3872512 21026 21026 9 | 8 10 10:24194803-28999033 10:24694813-27787205 4.11087 3092217 20401 20401 10 | 9 10 10:26803477-31872198 10:27787206-30833889 5.45464 3046605 20401 20401 11 | 10 10 10:30302174-36205177 10:30833890-34518980 4.00019 3685078 22570 22570 12 | 11 10 10:34018730-47052910 10:34518981-45715415 4.00041 11196376 50138 50138 13 | 12 10 10:44114671-53078657 10:45715416-51752965 9.50097 6037437 20401 20401 14 | 13 10 10:50922866-56301326 10:51752966-55236773 4.94944 3483697 20401 20401 15 | 14 10 10:54694883-61113973 10:55236774-60371444 4.00018 5134567 33914 33914 16 | 15 10 10:59156534-65891602 10:60371445-64310341 4.11395 3938765 20401 20401 17 | 16 10 10:63177991-71002637 10:64310342-69570609 4.00008 5260111 31913 31913 18 | 17 10 10:68319938-73349665 10:69570610-72849620 5.51447 3278848 20401 20401 19 | 18 10 10:72332050-78739630 10:72849621-77915833 4 5065941 22240 22240 20 | 19 10 10:76983614-82426392 10:77915834-81512824 5.81302 3596792 20401 20401 21 | 20 10 10:80901024-85787271 10:81512825-84857034 4.07217 3344117 20401 20401 22 | 21 10 10:83875895-89967162 10:84857035-89115241 4.00014 4258084 26036 26036 23 | 22 10 10:87937613-94634237 10:89115242-93019133 5.1077 3903664 20401 20401 24 | 23 10 10:92227419-98789780 10:93019134-97990064 4.00758 4970704 24100 24100 25 | 24 10 10:96753908-102790799 10:97990065-102102107 4.37054 4111981 20401 20401 26 | 25 10 10:100372079-108798137 10:102102108-107995786 4.00498 5893591 25444 25444 27 | 26 10 10:106335058-113874721 10:107995787-112604998 4.01245 4609131 27249 27249 28 | 27 10 10:111937255-117940982 10:112604999-116385825 6.08057 3780805 20401 20401 29 | 28 10 10:115885496-120901175 10:116385826-120194922 5.62523 3809090 20401 20401 30 | 29 10 10:119614883-124015629 10:120194923-123515600 5.74539 3320653 20401 20401 31 | 30 10 10:123015298-127376145 10:123515601-126794904 7.31635 3279241 20401 20401 32 | 31 10 10:126156438-130550814 10:126794905-130050694 7.31839 3255565 20401 20401 33 | 32 10 10:129550818-133457343 10:130050695-132956354 8.41968 2905455 20401 20401 34 | 33 10 10:132456354-1000000000 10:132956355-1000000000 4.96356 2567997 18560 18560 35 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr10_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr10 chr10:1-3489813 chr10:1-2989483 4.81421 2928963 20401 20401 2 | 1 chr10 chr10:2489486-6142006 chr10:2989484-5641960 7.11313 2652446 20401 20401 3 | 2 chr10 chr10:5141918-8936908 chr10:5641961-8436840 7.70729 2794841 20401 20401 4 | 3 chr10 chr10:7935761-12384611 chr10:8436841-11831112 6.18974 3394235 20401 20401 5 | 4 chr10 chr10:11311387-15151348 chr10:11831113-14651033 7.28045 2819903 20401 20401 6 | 5 chr10 chr10:14137678-18349725 chr10:14651034-17557051 5.52615 2905940 20401 20401 7 | 6 chr10 chr10:16908152-21515516 chr10:17557052-20822158 4.00005 3265002 20762 20762 8 | 7 chr10 chr10:19993563-25245188 chr10:20822159-24694812 4.01691 3872512 21026 21026 9 | 8 chr10 chr10:24194803-28999033 chr10:24694813-27787205 4.11087 3092217 20401 20401 10 | 9 chr10 chr10:26803477-31872198 chr10:27787206-30833889 5.45464 3046605 20401 20401 11 | 10 chr10 chr10:30302174-36205177 chr10:30833890-34518980 4.00019 3685078 22570 22570 12 | 11 chr10 chr10:34018730-47052910 chr10:34518981-45715415 4.00041 11196376 50138 50138 13 | 12 chr10 chr10:44114671-53078657 chr10:45715416-51752965 9.50097 6037437 20401 20401 14 | 13 chr10 chr10:50922866-56301326 chr10:51752966-55236773 4.94944 3483697 20401 20401 15 | 14 chr10 chr10:54694883-61113973 chr10:55236774-60371444 4.00018 5134567 33914 33914 16 | 15 chr10 chr10:59156534-65891602 chr10:60371445-64310341 4.11395 3938765 20401 20401 17 | 16 chr10 chr10:63177991-71002637 chr10:64310342-69570609 4.00008 5260111 31913 31913 18 | 17 chr10 chr10:68319938-73349665 chr10:69570610-72849620 5.51447 3278848 20401 20401 19 | 18 chr10 chr10:72332050-78739630 chr10:72849621-77915833 4 5065941 22240 22240 20 | 19 chr10 chr10:76983614-82426392 chr10:77915834-81512824 5.81302 3596792 20401 20401 21 | 20 chr10 chr10:80901024-85787271 chr10:81512825-84857034 4.07217 3344117 20401 20401 22 | 21 chr10 chr10:83875895-89967162 chr10:84857035-89115241 4.00014 4258084 26036 26036 23 | 22 chr10 chr10:87937613-94634237 chr10:89115242-93019133 5.1077 3903664 20401 20401 24 | 23 chr10 chr10:92227419-98789780 chr10:93019134-97990064 4.00758 4970704 24100 24100 25 | 24 chr10 chr10:96753908-102790799 chr10:97990065-102102107 4.37054 4111981 20401 20401 26 | 25 chr10 chr10:100372079-108798137 chr10:102102108-107995786 4.00498 5893591 25444 25444 27 | 26 chr10 chr10:106335058-113874721 chr10:107995787-112604998 4.01245 4609131 27249 27249 28 | 27 chr10 chr10:111937255-117940982 chr10:112604999-116385825 6.08057 3780805 20401 20401 29 | 28 chr10 chr10:115885496-120901175 chr10:116385826-120194922 5.62523 3809090 20401 20401 30 | 29 chr10 chr10:119614883-124015629 chr10:120194923-123515600 5.74539 3320653 20401 20401 31 | 30 chr10 chr10:123015298-127376145 chr10:123515601-126794904 7.31635 3279241 20401 20401 32 | 31 chr10 chr10:126156438-130550814 chr10:126794905-130050694 7.31839 3255565 20401 20401 33 | 32 chr10 chr10:129550818-133457343 chr10:130050695-132956354 8.41968 2905455 20401 20401 34 | 33 chr10 chr10:132456354-1000000000 chr10:132956355-1000000000 4.96356 2567997 18560 18560 35 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr11.txt: -------------------------------------------------------------------------------- 1 | 0 11 11:1-3720653 11:1-3220502 6.62467 3133195 20701 20701 2 | 1 11 11:2719605-6289089 11:3220503-5675957 4.88439 2455401 20701 20701 3 | 2 11 11:5175892-10372354 11:5675958-8725425 6.44996 3049296 20701 20701 4 | 3 11 11:8193801-12711799 11:8725426-12211751 5.57802 3486109 20701 20701 5 | 4 11 11:11711640-17538971 11:12211752-16467936 4.7639 4255926 20701 20701 6 | 5 11 11:15295430-20777365 11:16467937-20181144 6.87077 3712920 20701 20701 7 | 6 11 11:19681143-24086936 11:20181145-23121535 5.24317 2940163 20701 20701 8 | 7 11 11:22371256-27750449 11:23121536-26370955 4.00285 3249052 25477 25477 9 | 8 11 11:25247589-33638380 11:26370956-32438356 4.00024 6067052 27411 27411 10 | 9 11 11:31938397-36603065 11:32438357-36103126 6.11193 3664547 20701 20701 11 | 10 11 11:35576658-41515137 11:36103127-40350688 4.00134 4247436 27324 27324 12 | 11 11 11:39389101-45039763 11:40350689-44539595 4.00048 4188835 25127 25127 13 | 12 11 11:44039234-60513780 11:44539596-58928247 4.00042 14388599 68455 68455 14 | 13 11 11:55534200-64142391 11:58928248-62962812 4.12035 4034556 20701 20701 15 | 14 11 11:62052108-69601589 11:62962813-69083750 4.0005 6120902 29189 29189 16 | 15 11 11:68102000-73623746 11:69083751-72372240 4.59154 3288442 20701 20701 17 | 16 11 11:71240302-78360169 11:72372241-76802381 4.00018 4430069 21338 21338 18 | 17 11 11:76266559-81298564 11:76802382-80492772 4.95158 3690264 20701 20701 19 | 18 11 11:79922304-87429422 11:80492773-86300469 4.00003 5807603 32228 32228 20 | 19 11 11:84214617-92821154 11:86300470-91946512 4.01078 5645927 34115 34115 21 | 20 11 11:90604596-96819444 11:91946513-95826479 4.7915 3879867 20701 20701 22 | 21 11 11:95326448-100755321 11:95826480-99756164 4.0033 3929665 25305 25305 23 | 22 11 11:98887378-105739924 11:99756165-103920313 4.00148 4164066 25458 25458 24 | 23 11 11:102837828-110702895 11:103920314-109177987 4.01732 5257455 28386 28386 25 | 24 11 11:108430981-114016080 11:109177988-113429199 4.13 4250533 20701 20701 26 | 25 11 11:112749800-117719316 11:113429200-117219346 6.37898 3789577 20701 20701 27 | 26 11 11:116384408-121636352 11:117219347-120891110 6.4335 3671572 20701 20701 28 | 27 11 11:120390716-124906967 11:120891111-124406815 6.24483 3515519 20701 20701 29 | 28 11 11:123499803-128582274 11:124406816-128073760 5.98622 3666820 20701 20701 30 | 29 11 11:127316324-132048423 11:128073761-131547828 8.17259 3473968 20701 20701 31 | 30 11 11:131047826-1000000000 11:131547829-1000000000 7.81781 3398611 21821 21821 32 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr11_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr11 chr11:1-3720653 chr11:1-3220502 6.62467 3133195 20701 20701 2 | 1 chr11 chr11:2719605-6289089 chr11:3220503-5675957 4.88439 2455401 20701 20701 3 | 2 chr11 chr11:5175892-10372354 chr11:5675958-8725425 6.44996 3049296 20701 20701 4 | 3 chr11 chr11:8193801-12711799 chr11:8725426-12211751 5.57802 3486109 20701 20701 5 | 4 chr11 chr11:11711640-17538971 chr11:12211752-16467936 4.7639 4255926 20701 20701 6 | 5 chr11 chr11:15295430-20777365 chr11:16467937-20181144 6.87077 3712920 20701 20701 7 | 6 chr11 chr11:19681143-24086936 chr11:20181145-23121535 5.24317 2940163 20701 20701 8 | 7 chr11 chr11:22371256-27750449 chr11:23121536-26370955 4.00285 3249052 25477 25477 9 | 8 chr11 chr11:25247589-33638380 chr11:26370956-32438356 4.00024 6067052 27411 27411 10 | 9 chr11 chr11:31938397-36603065 chr11:32438357-36103126 6.11193 3664547 20701 20701 11 | 10 chr11 chr11:35576658-41515137 chr11:36103127-40350688 4.00134 4247436 27324 27324 12 | 11 chr11 chr11:39389101-45039763 chr11:40350689-44539595 4.00048 4188835 25127 25127 13 | 12 chr11 chr11:44039234-60513780 chr11:44539596-58928247 4.00042 14388599 68455 68455 14 | 13 chr11 chr11:55534200-64142391 chr11:58928248-62962812 4.12035 4034556 20701 20701 15 | 14 chr11 chr11:62052108-69601589 chr11:62962813-69083750 4.0005 6120902 29189 29189 16 | 15 chr11 chr11:68102000-73623746 chr11:69083751-72372240 4.59154 3288442 20701 20701 17 | 16 chr11 chr11:71240302-78360169 chr11:72372241-76802381 4.00018 4430069 21338 21338 18 | 17 chr11 chr11:76266559-81298564 chr11:76802382-80492772 4.95158 3690264 20701 20701 19 | 18 chr11 chr11:79922304-87429422 chr11:80492773-86300469 4.00003 5807603 32228 32228 20 | 19 chr11 chr11:84214617-92821154 chr11:86300470-91946512 4.01078 5645927 34115 34115 21 | 20 chr11 chr11:90604596-96819444 chr11:91946513-95826479 4.7915 3879867 20701 20701 22 | 21 chr11 chr11:95326448-100755321 chr11:95826480-99756164 4.0033 3929665 25305 25305 23 | 22 chr11 chr11:98887378-105739924 chr11:99756165-103920313 4.00148 4164066 25458 25458 24 | 23 chr11 chr11:102837828-110702895 chr11:103920314-109177987 4.01732 5257455 28386 28386 25 | 24 chr11 chr11:108430981-114016080 chr11:109177988-113429199 4.13 4250533 20701 20701 26 | 25 chr11 chr11:112749800-117719316 chr11:113429200-117219346 6.37898 3789577 20701 20701 27 | 26 chr11 chr11:116384408-121636352 chr11:117219347-120891110 6.4335 3671572 20701 20701 28 | 27 chr11 chr11:120390716-124906967 chr11:120891111-124406815 6.24483 3515519 20701 20701 29 | 28 chr11 chr11:123499803-128582274 chr11:124406816-128073760 5.98622 3666820 20701 20701 30 | 29 chr11 chr11:127316324-132048423 chr11:128073761-131547828 8.17259 3473968 20701 20701 31 | 30 chr11 chr11:131047826-1000000000 chr11:131547829-1000000000 7.81781 3398611 21821 21821 32 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr12.txt: -------------------------------------------------------------------------------- 1 | 0 12 12:1-3818115 12:1-3318120 7.40451 3256721 20001 20001 2 | 1 12 12:2817942-7167857 12:3318121-6609866 9.61899 3291636 20001 20001 3 | 2 12 12:6109962-10481370 12:6609867-9896733 5.3811 3286671 20001 20001 4 | 3 12 12:8775189-13498303 12:9896734-12998038 6.45119 3101209 20001 20001 5 | 4 12 12:12497957-17392570 12:12998039-16682330 5.19645 3684246 20001 20001 6 | 5 12 12:16136782-21021655 12:16682331-20521720 4.00012 3839278 21227 21227 7 | 6 12 12:20021778-24548725 12:20521721-24048262 5.00475 3526389 20001 20001 8 | 7 12 12:23548213-28130810 12:24048263-27463138 5.05348 3414767 20001 20001 9 | 8 12 12:26438801-31516511 12:27463139-30948823 4.00071 3485660 21949 21949 10 | 9 12 12:29905089-42284818 12:30948824-40632099 4.00075 9683275 50959 50959 11 | 10 12 12:33334311-47685585 12:40632100-46513712 4.00193 5881588 34895 34895 12 | 11 12 12:44990380-51947548 12:46513713-50532944 4.00003 4018724 20565 20565 13 | 12 12 12:49612347-54952742 12:50532945-54440255 4.68129 3906735 20001 20001 14 | 13 12 12:53481736-59473971 12:54440256-58642704 4.09068 4202161 20001 20001 15 | 14 12 12:56981731-64948056 12:58642705-63910817 4.00134 5267765 29917 29917 16 | 15 12 12:63114782-68513064 12:63910818-67960481 5.12886 4049432 20001 20001 17 | 16 12 12:67262634-72608138 12:67960482-71560607 4.99782 3599965 20001 20001 18 | 17 12 12:70892138-76902654 12:71560608-76402716 4.00076 4841884 25364 25364 19 | 18 12 12:75902684-81132920 12:76402717-80395113 5.42315 3992080 20001 20001 20 | 19 12 12:79057291-88169055 12:80395114-85234182 4.00649 4838876 25852 25852 21 | 20 12 12:83501801-92703588 12:85234183-92066236 4.03036 6831952 30923 30923 22 | 21 12 12:90724620-96191113 12:92066237-95691031 6.47115 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-------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr12_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr12 chr12:1-3818115 chr12:1-3318120 7.40451 3256721 20001 20001 2 | 1 chr12 chr12:2817942-7167857 chr12:3318121-6609866 9.61899 3291636 20001 20001 3 | 2 chr12 chr12:6109962-10481370 chr12:6609867-9896733 5.3811 3286671 20001 20001 4 | 3 chr12 chr12:8775189-13498303 chr12:9896734-12998038 6.45119 3101209 20001 20001 5 | 4 chr12 chr12:12497957-17392570 chr12:12998039-16682330 5.19645 3684246 20001 20001 6 | 5 chr12 chr12:16136782-21021655 chr12:16682331-20521720 4.00012 3839278 21227 21227 7 | 6 chr12 chr12:20021778-24548725 chr12:20521721-24048262 5.00475 3526389 20001 20001 8 | 7 chr12 chr12:23548213-28130810 chr12:24048263-27463138 5.05348 3414767 20001 20001 9 | 8 chr12 chr12:26438801-31516511 chr12:27463139-30948823 4.00071 3485660 21949 21949 10 | 9 chr12 chr12:29905089-42284818 chr12:30948824-40632099 4.00075 9683275 50959 50959 11 | 10 chr12 chr12:33334311-47685585 chr12:40632100-46513712 4.00193 5881588 34895 34895 12 | 11 chr12 chr12:44990380-51947548 chr12:46513713-50532944 4.00003 4018724 20565 20565 13 | 12 chr12 chr12:49612347-54952742 chr12:50532945-54440255 4.68129 3906735 20001 20001 14 | 13 chr12 chr12:53481736-59473971 chr12:54440256-58642704 4.09068 4202161 20001 20001 15 | 14 chr12 chr12:56981731-64948056 chr12:58642705-63910817 4.00134 5267765 29917 29917 16 | 15 chr12 chr12:63114782-68513064 chr12:63910818-67960481 5.12886 4049432 20001 20001 17 | 16 chr12 chr12:67262634-72608138 chr12:67960482-71560607 4.99782 3599965 20001 20001 18 | 17 chr12 chr12:70892138-76902654 chr12:71560608-76402716 4.00076 4841884 25364 25364 19 | 18 chr12 chr12:75902684-81132920 chr12:76402717-80395113 5.42315 3992080 20001 20001 20 | 19 chr12 chr12:79057291-88169055 chr12:80395114-85234182 4.00649 4838876 25852 25852 21 | 20 chr12 chr12:83501801-92703588 chr12:85234183-92066236 4.03036 6831952 30923 30923 22 | 21 chr12 chr12:90724620-96191113 chr12:92066237-95691031 6.47115 3624679 20001 20001 23 | 22 chr12 chr12:95010807-100012180 chr12:95691032-99273848 5.05296 3582655 20001 20001 24 | 23 chr12 chr12:98216737-104054434 chr12:99273849-103172315 4.23682 3898234 20001 20001 25 | 24 chr12 chr12:102081104-107848067 chr12:103172316-106607112 4.84122 3434628 20001 20001 26 | 25 chr12 chr12:106098403-113348512 chr12:106607113-111337863 4.00004 4730662 22515 22515 27 | 26 chr12 chr12:109527169-115890490 chr12:111337864-115390451 4.99033 4052539 20001 20001 28 | 27 chr12 chr12:114890347-119526742 chr12:115390452-118904260 7.33455 3513775 20001 20001 29 | 28 chr12 chr12:118311103-124251303 chr12:118904261-122610152 4.62526 3705855 20001 20001 30 | 29 chr12 chr12:121810232-126682999 chr12:122610153-126182982 5.56682 3572790 20001 20001 31 | 30 chr12 chr12:125682931-129374221 chr12:126182983-128874122 8.69695 2691103 20001 20001 32 | 31 chr12 chr12:128373972-131937302 chr12:128874123-131437299 10.2338 2563109 20001 20001 33 | 32 chr12 chr12:130937304-1000000000 chr12:131437300-1000000000 4.2061 2404265 15785 15785 34 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr13.txt: -------------------------------------------------------------------------------- 1 | 0 13 13:1-22423763 13:1-21923749 4.00498 2903652 20689 20689 2 | 1 13 13:21338133-25223720 13:21923750-24723689 7.85401 2799930 20001 20001 3 | 2 13 13:24223659-28283044 13:24723690-27573217 6.26322 2849251 20001 20001 4 | 3 13 13:27073322-31287190 13:27573218-30787125 6.32391 3213620 20001 20001 5 | 4 13 13:30168482-35104935 13:30787126-34369470 6.42998 3582179 20001 20001 6 | 5 13 13:33776506-39241993 13:34369471-38143790 5.28649 3773967 20001 20001 7 | 6 13 13:37348706-42642637 13:38143791-41509263 4.79768 3365222 20001 20001 8 | 7 13 13:40889927-46185729 13:41509264-45380668 4.5891 3871356 20001 20001 9 | 8 13 13:44639237-50477325 13:45380669-48941378 5.03519 3560567 20001 20001 10 | 9 13 13:47738847-56325190 13:48941379-54060600 4.0005 5118962 24028 24028 11 | 10 13 13:52435472-62628197 13:54060601-61266608 4.01306 7205855 32400 32400 12 | 11 13 13:60109081-69459937 13:61266609-67751635 4.00494 6484969 37429 37429 13 | 12 13 13:66336191-72959890 13:67751636-72361762 4.00003 4609977 27046 27046 14 | 13 13 13:71520241-76783423 13:72361763-75849970 5.88279 3487920 20001 20001 15 | 14 13 13:75149534-80883317 13:75849971-79777658 4.00002 3927513 22045 22045 16 | 15 13 13:79068501-88191532 13:79777659-86118004 4.00003 6340107 34910 34910 17 | 16 13 13:84492687-93283818 13:86118005-92361536 4.00004 6243289 34843 34843 18 | 17 13 13:91356690-97385221 13:92361537-95888507 4.65916 3526789 20001 20001 19 | 18 13 13:95388653-100547427 13:95888508-99584483 4.72747 3695754 20001 20001 20 | 19 13 13:99084258-103828420 13:99584484-103160149 4.75419 3575314 20001 20001 21 | 20 13 13:102306889-106656334 13:103160150-106156339 6.50732 2995863 20001 20001 22 | 21 13 13:105656371-109793378 13:106156340-109293314 8.01234 3136937 20001 20001 23 | 22 13 13:108793287-112674127 13:109293315-112173875 6.98998 2880506 20001 20001 24 | 23 13 13:111507049-1000000000 13:112173876-1000000000 5.56174 2935927 19123 19123 25 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr13_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr13 chr13:1-22423763 chr13:1-21923749 4.00498 2903652 20689 20689 2 | 1 chr13 chr13:21338133-25223720 chr13:21923750-24723689 7.85401 2799930 20001 20001 3 | 2 chr13 chr13:24223659-28283044 chr13:24723690-27573217 6.26322 2849251 20001 20001 4 | 3 chr13 chr13:27073322-31287190 chr13:27573218-30787125 6.32391 3213620 20001 20001 5 | 4 chr13 chr13:30168482-35104935 chr13:30787126-34369470 6.42998 3582179 20001 20001 6 | 5 chr13 chr13:33776506-39241993 chr13:34369471-38143790 5.28649 3773967 20001 20001 7 | 6 chr13 chr13:37348706-42642637 chr13:38143791-41509263 4.79768 3365222 20001 20001 8 | 7 chr13 chr13:40889927-46185729 chr13:41509264-45380668 4.5891 3871356 20001 20001 9 | 8 chr13 chr13:44639237-50477325 chr13:45380669-48941378 5.03519 3560567 20001 20001 10 | 9 chr13 chr13:47738847-56325190 chr13:48941379-54060600 4.0005 5118962 24028 24028 11 | 10 chr13 chr13:52435472-62628197 chr13:54060601-61266608 4.01306 7205855 32400 32400 12 | 11 chr13 chr13:60109081-69459937 chr13:61266609-67751635 4.00494 6484969 37429 37429 13 | 12 chr13 chr13:66336191-72959890 chr13:67751636-72361762 4.00003 4609977 27046 27046 14 | 13 chr13 chr13:71520241-76783423 chr13:72361763-75849970 5.88279 3487920 20001 20001 15 | 14 chr13 chr13:75149534-80883317 chr13:75849971-79777658 4.00002 3927513 22045 22045 16 | 15 chr13 chr13:79068501-88191532 chr13:79777659-86118004 4.00003 6340107 34910 34910 17 | 16 chr13 chr13:84492687-93283818 chr13:86118005-92361536 4.00004 6243289 34843 34843 18 | 17 chr13 chr13:91356690-97385221 chr13:92361537-95888507 4.65916 3526789 20001 20001 19 | 18 chr13 chr13:95388653-100547427 chr13:95888508-99584483 4.72747 3695754 20001 20001 20 | 19 chr13 chr13:99084258-103828420 chr13:99584484-103160149 4.75419 3575314 20001 20001 21 | 20 chr13 chr13:102306889-106656334 chr13:103160150-106156339 6.50732 2995863 20001 20001 22 | 21 chr13 chr13:105656371-109793378 chr13:106156340-109293314 8.01234 3136937 20001 20001 23 | 22 chr13 chr13:108793287-112674127 chr13:109293315-112173875 6.98998 2880506 20001 20001 24 | 23 chr13 chr13:111507049-1000000000 chr13:112173876-1000000000 5.56174 2935927 19123 19123 25 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr14.txt: -------------------------------------------------------------------------------- 1 | 0 14 14:1-23214517 14:1-22714492 10.1256 3714402 20301 20301 2 | 1 14 14:22214505-26643485 14:22714493-26143631 7.71623 3428962 20301 20301 3 | 2 14 14:25583619-30829481 14:26143632-30040267 4.74007 3896477 20301 20301 4 | 3 14 14:29199301-34263552 14:30040268-33763455 5.8829 3723102 20301 20301 5 | 4 14 14:33263506-38712705 14:33763456-37431070 7.21464 3667338 20301 20301 6 | 5 14 14:36874744-45205936 14:37431071-43554352 4.00002 6122965 36805 36805 7 | 6 14 14:42718255-51342234 14:43554353-50362754 4.0092 6808209 37894 37894 8 | 7 14 14:49004821-54437832 14:50362755-53921639 4.24545 3558788 20301 20301 9 | 8 14 14:52677183-58439837 14:53921640-57571473 5.45614 3649716 20301 20301 10 | 9 14 14:57034325-63166572 14:57571474-62221859 4.0056 4650249 23123 23123 11 | 10 14 14:61683205-69053534 14:62221860-67889769 4.04305 5667814 30661 30661 12 | 11 14 14:65652886-72848239 14:67889770-71596421 4.65469 3706519 20301 20301 13 | 12 14 14:71096344-76546936 14:71596422-75795428 4.00239 4198903 22047 22047 14 | 13 14 14:74842815-80414857 14:75795429-79261657 5.22232 3466168 20301 20301 15 | 14 14 14:78561330-85180020 14:79261658-83787510 4.00001 4525606 24595 24595 16 | 15 14 14:82837337-89483346 14:83787511-88216350 4.00008 4428588 25488 25488 17 | 16 14 14:87127596-92652216 14:88216351-91755242 5.87231 3538808 20301 20301 18 | 17 14 14:91075035-95539737 14:91755243-95039785 5.36427 3284359 20301 20301 19 | 18 14 14:94455902-98928631 14:95039786-98241502 8.4621 3201561 20301 20301 20 | 19 14 14:97741470-102027051 14:98241503-101526240 6.78725 3284658 20301 20301 21 | 20 14 14:101026299-105541121 14:101526241-104869314 5.10332 3343013 20301 20301 22 | 21 14 14:104369228-1000000000 14:104869315-1000000000 5.28258 2420121 18884 18884 23 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr14_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr14 chr14:1-23214517 chr14:1-22714492 10.1256 3714402 20301 20301 2 | 1 chr14 chr14:22214505-26643485 chr14:22714493-26143631 7.71623 3428962 20301 20301 3 | 2 chr14 chr14:25583619-30829481 chr14:26143632-30040267 4.74007 3896477 20301 20301 4 | 3 chr14 chr14:29199301-34263552 chr14:30040268-33763455 5.8829 3723102 20301 20301 5 | 4 chr14 chr14:33263506-38712705 chr14:33763456-37431070 7.21464 3667338 20301 20301 6 | 5 chr14 chr14:36874744-45205936 chr14:37431071-43554352 4.00002 6122965 36805 36805 7 | 6 chr14 chr14:42718255-51342234 chr14:43554353-50362754 4.0092 6808209 37894 37894 8 | 7 chr14 chr14:49004821-54437832 chr14:50362755-53921639 4.24545 3558788 20301 20301 9 | 8 chr14 chr14:52677183-58439837 chr14:53921640-57571473 5.45614 3649716 20301 20301 10 | 9 chr14 chr14:57034325-63166572 chr14:57571474-62221859 4.0056 4650249 23123 23123 11 | 10 chr14 chr14:61683205-69053534 chr14:62221860-67889769 4.04305 5667814 30661 30661 12 | 11 chr14 chr14:65652886-72848239 chr14:67889770-71596421 4.65469 3706519 20301 20301 13 | 12 chr14 chr14:71096344-76546936 chr14:71596422-75795428 4.00239 4198903 22047 22047 14 | 13 chr14 chr14:74842815-80414857 chr14:75795429-79261657 5.22232 3466168 20301 20301 15 | 14 chr14 chr14:78561330-85180020 chr14:79261658-83787510 4.00001 4525606 24595 24595 16 | 15 chr14 chr14:82837337-89483346 chr14:83787511-88216350 4.00008 4428588 25488 25488 17 | 16 chr14 chr14:87127596-92652216 chr14:88216351-91755242 5.87231 3538808 20301 20301 18 | 17 chr14 chr14:91075035-95539737 chr14:91755243-95039785 5.36427 3284359 20301 20301 19 | 18 chr14 chr14:94455902-98928631 chr14:95039786-98241502 8.4621 3201561 20301 20301 20 | 19 chr14 chr14:97741470-102027051 chr14:98241503-101526240 6.78725 3284658 20301 20301 21 | 20 chr14 chr14:101026299-105541121 chr14:101526241-104869314 5.10332 3343013 20301 20301 22 | 21 chr14 chr14:104369228-1000000000 chr14:104869315-1000000000 5.28258 2420121 18884 18884 23 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr15.txt: -------------------------------------------------------------------------------- 1 | 0 15 15:1-25257585 15:1-24757564 21.8632 4757452 20001 20001 2 | 1 15 15:24026111-28178789 15:24757565-27678777 8.66337 2921054 20001 20001 3 | 2 15 15:27178475-32552789 15:27678778-31756998 6.27833 4078065 20001 20001 4 | 3 15 15:30817561-36044091 15:31756999-35141036 9.2163 3383913 20001 20001 5 | 4 15 15:34641079-39453970 15:35141037-38953876 5.84145 3812708 20001 20001 6 | 5 15 15:38167710-45416855 15:38953877-42573411 4.74722 3619408 20001 20001 7 | 6 15 15:41130313-49238084 15:42573412-48210205 4.0013 5636593 26845 26845 8 | 7 15 15:47198362-54348889 15:48210206-53664640 4.00245 5454264 28349 28349 9 | 8 15 15:52996446-58263600 15:53664641-57763633 4.00964 4098801 26563 26563 10 | 9 15 15:56786498-61452749 15:57763634-60952899 5.34807 3188891 20001 20001 11 | 10 15 15:60196454-66358983 15:60952900-64486779 5.67406 3533673 20001 20001 12 | 11 15 15:63297719-69143655 15:64486780-68643480 4.0274 4156659 20145 20145 13 | 12 15 15:67372561-74455964 15:68643481-72528156 6.56352 3884614 20001 20001 14 | 13 15 15:71775917-79810707 15:72528157-79310272 4.00021 6782079 31773 31773 15 | 14 15 15:78611778-85962064 15:79310273-83476543 5.63678 4166254 20001 20001 16 | 15 15 15:81673418-88870812 15:83476544-88253382 4.0002 4776758 26340 26340 17 | 16 15 15:87459566-91904853 15:88253383-91404740 6.10204 3151243 20001 20001 18 | 17 15 15:90709545-94664691 15:91404741-94164771 8.64251 2759871 20001 20001 19 | 18 15 15:93664857-98071787 15:94164772-97571163 9.47871 3406268 20001 20001 20 | 19 15 15:97070420-101014131 15:97571164-100514103 7.80063 2942933 20001 20001 21 | 20 15 15:99992103-1000000000 15:100514104-1000000000 5.96567 2006948 15562 15562 22 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr15_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr15 chr15:1-25257585 chr15:1-24757564 21.8632 4757452 20001 20001 2 | 1 chr15 chr15:24026111-28178789 chr15:24757565-27678777 8.66337 2921054 20001 20001 3 | 2 chr15 chr15:27178475-32552789 chr15:27678778-31756998 6.27833 4078065 20001 20001 4 | 3 chr15 chr15:30817561-36044091 chr15:31756999-35141036 9.2163 3383913 20001 20001 5 | 4 chr15 chr15:34641079-39453970 chr15:35141037-38953876 5.84145 3812708 20001 20001 6 | 5 chr15 chr15:38167710-45416855 chr15:38953877-42573411 4.74722 3619408 20001 20001 7 | 6 chr15 chr15:41130313-49238084 chr15:42573412-48210205 4.0013 5636593 26845 26845 8 | 7 chr15 chr15:47198362-54348889 chr15:48210206-53664640 4.00245 5454264 28349 28349 9 | 8 chr15 chr15:52996446-58263600 chr15:53664641-57763633 4.00964 4098801 26563 26563 10 | 9 chr15 chr15:56786498-61452749 chr15:57763634-60952899 5.34807 3188891 20001 20001 11 | 10 chr15 chr15:60196454-66358983 chr15:60952900-64486779 5.67406 3533673 20001 20001 12 | 11 chr15 chr15:63297719-69143655 chr15:64486780-68643480 4.0274 4156659 20145 20145 13 | 12 chr15 chr15:67372561-74455964 chr15:68643481-72528156 6.56352 3884614 20001 20001 14 | 13 chr15 chr15:71775917-79810707 chr15:72528157-79310272 4.00021 6782079 31773 31773 15 | 14 chr15 chr15:78611778-85962064 chr15:79310273-83476543 5.63678 4166254 20001 20001 16 | 15 chr15 chr15:81673418-88870812 chr15:83476544-88253382 4.0002 4776758 26340 26340 17 | 16 chr15 chr15:87459566-91904853 chr15:88253383-91404740 6.10204 3151243 20001 20001 18 | 17 chr15 chr15:90709545-94664691 chr15:91404741-94164771 8.64251 2759871 20001 20001 19 | 18 chr15 chr15:93664857-98071787 chr15:94164772-97571163 9.47871 3406268 20001 20001 20 | 19 chr15 chr15:97070420-101014131 chr15:97571164-100514103 7.80063 2942933 20001 20001 21 | 20 chr15 chr15:99992103-1000000000 chr15:100514104-1000000000 5.96567 2006948 15562 15562 22 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr16.txt: -------------------------------------------------------------------------------- 1 | 0 16 16:1-3401904 16:1-2894772 6.07045 2834531 20101 20101 2 | 1 16 16:2394768-6165661 16:2894773-5665640 5.40329 2770742 20101 20101 3 | 2 16 16:5165636-8165766 16:5665641-7665778 6.32189 2000074 22924 22924 4 | 3 16 16:7165584-10426259 16:7665779-9824341 5.56191 2158434 20101 20101 5 | 4 16 16:9250084-13044569 16:9824342-12544428 5.33051 2719972 20101 20101 6 | 5 16 16:11696021-16507197 16:12544429-16007189 4.94121 3462741 20101 20101 7 | 6 16 16:14471998-20517238 16:16007190-20017373 7.24014 4010026 20101 20101 8 | 7 16 16:19242830-25072117 16:20017374-24501518 7.18811 4483934 20101 20101 9 | 8 16 16:24001268-28286477 16:24501519-27786228 7.10409 3284556 20101 20101 10 | 9 16 16:27097526-49687824 16:27786229-48978406 4.0023 21192086 34842 34842 11 | 10 16 16:31656180-53440299 16:48978407-52722532 6.10796 3744075 20101 20101 12 | 11 16 16:52136624-56911856 16:52722533-55982010 7.67076 3259430 20101 20101 13 | 12 16 16:55481794-60362562 16:55982011-59344947 5.71647 3362856 20101 20101 14 | 13 16 16:58524867-64407348 16:59344948-63447384 4.00266 4102192 20832 20832 15 | 14 16 16:62463475-70891236 16:63447385-68527508 4.00024 5079883 22815 22815 16 | 15 16 16:66131861-74069267 16:68527509-73566151 4.00011 5038512 22778 22778 17 | 16 16 16:73065874-77690072 16:73566152-76799497 4.20596 3233231 20101 20101 18 | 17 16 16:76059085-79347926 16:76799498-78847913 4.20219 2048331 20101 20101 19 | 18 16 16:78347919-81550448 16:78847914-81050393 6.49342 2202382 20101 20101 20 | 19 16 16:80550447-83702488 16:81050394-83202232 6.42544 2151770 20101 20101 21 | 20 16 16:82702197-85729583 16:83202233-85229424 7.58326 2027137 20101 20101 22 | 21 16 16:84729471-87993975 16:85229425-87493999 9.43772 2264479 20101 20101 23 | 22 16 16:86953149-1000000000 16:87494000-1000000000 5.20724 2798746 23192 23192 24 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr16_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr16 chr16:1-3401904 chr16:1-2894772 6.07045 2834531 20101 20101 2 | 1 chr16 chr16:2394768-6165661 chr16:2894773-5665640 5.40329 2770742 20101 20101 3 | 2 chr16 chr16:5165636-8165766 chr16:5665641-7665778 6.32189 2000074 22924 22924 4 | 3 chr16 chr16:7165584-10426259 chr16:7665779-9824341 5.56191 2158434 20101 20101 5 | 4 chr16 chr16:9250084-13044569 chr16:9824342-12544428 5.33051 2719972 20101 20101 6 | 5 chr16 chr16:11696021-16507197 chr16:12544429-16007189 4.94121 3462741 20101 20101 7 | 6 chr16 chr16:14471998-20517238 chr16:16007190-20017373 7.24014 4010026 20101 20101 8 | 7 chr16 chr16:19242830-25072117 chr16:20017374-24501518 7.18811 4483934 20101 20101 9 | 8 chr16 chr16:24001268-28286477 chr16:24501519-27786228 7.10409 3284556 20101 20101 10 | 9 chr16 chr16:27097526-49687824 chr16:27786229-48978406 4.0023 21192086 34842 34842 11 | 10 chr16 chr16:31656180-53440299 chr16:48978407-52722532 6.10796 3744075 20101 20101 12 | 11 chr16 chr16:52136624-56911856 chr16:52722533-55982010 7.67076 3259430 20101 20101 13 | 12 chr16 chr16:55481794-60362562 chr16:55982011-59344947 5.71647 3362856 20101 20101 14 | 13 chr16 chr16:58524867-64407348 chr16:59344948-63447384 4.00266 4102192 20832 20832 15 | 14 chr16 chr16:62463475-70891236 chr16:63447385-68527508 4.00024 5079883 22815 22815 16 | 15 chr16 chr16:66131861-74069267 chr16:68527509-73566151 4.00011 5038512 22778 22778 17 | 16 chr16 chr16:73065874-77690072 chr16:73566152-76799497 4.20596 3233231 20101 20101 18 | 17 chr16 chr16:76059085-79347926 chr16:76799498-78847913 4.20219 2048331 20101 20101 19 | 18 chr16 chr16:78347919-81550448 chr16:78847914-81050393 6.49342 2202382 20101 20101 20 | 19 chr16 chr16:80550447-83702488 chr16:81050394-83202232 6.42544 2151770 20101 20101 21 | 20 chr16 chr16:82702197-85729583 chr16:83202233-85229424 7.58326 2027137 20101 20101 22 | 21 chr16 chr16:84729471-87993975 chr16:85229425-87493999 9.43772 2264479 20101 20101 23 | 22 chr16 chr16:86953149-1000000000 chr16:87494000-1000000000 5.20724 2798746 23192 23192 24 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr17.txt: -------------------------------------------------------------------------------- 1 | 0 17 17:1-3438632 17:1-2910225 8.25976 2909330 20001 20001 2 | 1 17 17:2410274-6414271 17:2910226-5913933 6.09216 3003602 20001 20001 3 | 2 17 17:5413880-9801316 17:5913934-9301284 8.17273 3387273 20001 20001 4 | 3 17 17:8801320-13037232 17:9301285-12537181 9.30515 3235790 20001 20001 5 | 4 17 17:12037088-15855308 17:12537182-15224979 8.51547 2687705 20001 20001 6 | 5 17 17:14724944-21158421 17:15224980-19384964 4.29731 4159958 20001 20001 7 | 6 17 17:18285667-30820850 17:19384965-29789910 4.02036 10404938 32728 32728 8 | 7 17 17:27338352-34289608 17:29789911-33496692 6.94712 3706713 20001 20001 9 | 8 17 17:32837626-39228897 17:33496693-37767017 7.10913 4270159 20001 20001 10 | 9 17 17:36797146-44901854 17:37767018-43060310 4.00022 5293136 24669 24669 11 | 10 17 17:41775043-48624045 17:43060311-48124039 4.01667 5063565 22840 22840 12 | 11 17 17:47561846-53216741 17:48124040-51960428 4.17339 3836154 20001 20001 13 | 12 17 17:50185730-56244958 17:51960429-55744760 6.59351 3784196 20001 20001 14 | 13 17 17:55244237-62209414 17:55744761-60793492 4.24003 5048714 20001 20001 15 | 14 17 17:59551137-65274926 17:60793493-64774776 4.79372 3981274 20001 20001 16 | 15 17 17:63614772-69244084 17:64774777-68540159 6.23792 3765277 20001 20001 17 | 16 17 17:67959533-72314149 17:68540160-71813965 8.05591 3273645 20001 20001 18 | 17 17 17:71313570-75536261 17:71813966-75036269 6.67233 3222229 20001 20001 19 | 18 17 17:74536033-78373464 17:75036270-77873222 11.4358 2836934 20001 20001 20 | 19 17 17:77373153-1000000000 17:77873223-1000000000 5.76903 3317098 22578 22578 21 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr17_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr17 chr17:1-3438632 chr17:1-2910225 8.25976 2909330 20001 20001 2 | 1 chr17 chr17:2410274-6414271 chr17:2910226-5913933 6.09216 3003602 20001 20001 3 | 2 chr17 chr17:5413880-9801316 chr17:5913934-9301284 8.17273 3387273 20001 20001 4 | 3 chr17 chr17:8801320-13037232 chr17:9301285-12537181 9.30515 3235790 20001 20001 5 | 4 chr17 chr17:12037088-15855308 chr17:12537182-15224979 8.51547 2687705 20001 20001 6 | 5 chr17 chr17:14724944-21158421 chr17:15224980-19384964 4.29731 4159958 20001 20001 7 | 6 chr17 chr17:18285667-30820850 chr17:19384965-29789910 4.02036 10404938 32728 32728 8 | 7 chr17 chr17:27338352-34289608 chr17:29789911-33496692 6.94712 3706713 20001 20001 9 | 8 chr17 chr17:32837626-39228897 chr17:33496693-37767017 7.10913 4270159 20001 20001 10 | 9 chr17 chr17:36797146-44901854 chr17:37767018-43060310 4.00022 5293136 24669 24669 11 | 10 chr17 chr17:41775043-48624045 chr17:43060311-48124039 4.01667 5063565 22840 22840 12 | 11 chr17 chr17:47561846-53216741 chr17:48124040-51960428 4.17339 3836154 20001 20001 13 | 12 chr17 chr17:50185730-56244958 chr17:51960429-55744760 6.59351 3784196 20001 20001 14 | 13 chr17 chr17:55244237-62209414 chr17:55744761-60793492 4.24003 5048714 20001 20001 15 | 14 chr17 chr17:59551137-65274926 chr17:60793493-64774776 4.79372 3981274 20001 20001 16 | 15 chr17 chr17:63614772-69244084 chr17:64774777-68540159 6.23792 3765277 20001 20001 17 | 16 chr17 chr17:67959533-72314149 chr17:68540160-71813965 8.05591 3273645 20001 20001 18 | 17 chr17 chr17:71313570-75536261 chr17:71813966-75036269 6.67233 3222229 20001 20001 19 | 18 chr17 chr17:74536033-78373464 chr17:75036270-77873222 11.4358 2836934 20001 20001 20 | 19 chr17 chr17:77373153-1000000000 chr17:77873223-1000000000 5.76903 3317098 22578 22578 21 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr18.txt: -------------------------------------------------------------------------------- 1 | 0 18 18:1-3555078 18:1-3054839 7.98653 3044164 20001 20001 2 | 1 18 18:2554836-6607182 18:3054840-6107101 10.105 3052186 20001 20001 3 | 2 18 18:5606467-9762049 18:6107102-9156446 9.51658 3049215 20001 20001 4 | 3 18 18:8656528-13283620 18:9156447-12052269 8.70184 2895665 20001 20001 5 | 4 18 18:11552196-20137968 18:12052270-19485678 4.00277 7433264 25363 25363 6 | 5 18 18:14356669-24281625 18:19485679-23427229 4.64351 3941450 20001 20001 7 | 6 18 18:22749550-28562333 18:23427230-27352132 4.00339 3924738 20001 20001 8 | 7 18 18:25792261-33192600 18:27352133-32072981 4.00043 4720447 23852 23852 9 | 8 18 18:30259843-38845471 18:32072982-37684538 4.02119 5611149 26891 26891 10 | 9 18 18:35837704-43893064 18:37684539-42971673 4.01658 5286986 26581 26581 11 | 10 18 18:41967501-47504963 18:42971674-46517897 5.71339 3546218 20001 20001 12 | 11 18 18:46017869-51276328 18:46517898-49955385 4.03973 3437412 20001 20001 13 | 12 18 18:49044221-55913654 18:49955386-55413660 4.00005 5457978 29026 29026 14 | 13 18 18:54594202-59192808 18:55413661-58491881 6.02322 3077926 20001 20001 15 | 14 18 18:57563676-63032180 18:58491882-62138079 5.91177 3646067 20001 20001 16 | 15 18 18:61637974-66319595 18:62138080-65819587 4.00233 3681440 23868 23868 17 | 16 18 18:65108478-69619992 18:65819588-69109002 5.82607 3289384 20001 20001 18 | 17 18 18:68187456-72475878 18:69109003-71975801 7.0885 2866701 20001 20001 19 | 18 18 18:71475536-75502550 18:71975802-75002217 7.61529 3026321 20001 20001 20 | 19 18 18:74502096-1000000000 18:75002218-1000000000 6.45691 3014893 22084 22084 21 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr18_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr18 chr18:1-3555078 chr18:1-3054839 7.98653 3044164 20001 20001 2 | 1 chr18 chr18:2554836-6607182 chr18:3054840-6107101 10.105 3052186 20001 20001 3 | 2 chr18 chr18:5606467-9762049 chr18:6107102-9156446 9.51658 3049215 20001 20001 4 | 3 chr18 chr18:8656528-13283620 chr18:9156447-12052269 8.70184 2895665 20001 20001 5 | 4 chr18 chr18:11552196-20137968 chr18:12052270-19485678 4.00277 7433264 25363 25363 6 | 5 chr18 chr18:14356669-24281625 chr18:19485679-23427229 4.64351 3941450 20001 20001 7 | 6 chr18 chr18:22749550-28562333 chr18:23427230-27352132 4.00339 3924738 20001 20001 8 | 7 chr18 chr18:25792261-33192600 chr18:27352133-32072981 4.00043 4720447 23852 23852 9 | 8 chr18 chr18:30259843-38845471 chr18:32072982-37684538 4.02119 5611149 26891 26891 10 | 9 chr18 chr18:35837704-43893064 chr18:37684539-42971673 4.01658 5286986 26581 26581 11 | 10 chr18 chr18:41967501-47504963 chr18:42971674-46517897 5.71339 3546218 20001 20001 12 | 11 chr18 chr18:46017869-51276328 chr18:46517898-49955385 4.03973 3437412 20001 20001 13 | 12 chr18 chr18:49044221-55913654 chr18:49955386-55413660 4.00005 5457978 29026 29026 14 | 13 chr18 chr18:54594202-59192808 chr18:55413661-58491881 6.02322 3077926 20001 20001 15 | 14 chr18 chr18:57563676-63032180 chr18:58491882-62138079 5.91177 3646067 20001 20001 16 | 15 chr18 chr18:61637974-66319595 chr18:62138080-65819587 4.00233 3681440 23868 23868 17 | 16 chr18 chr18:65108478-69619992 chr18:65819588-69109002 5.82607 3289384 20001 20001 18 | 17 chr18 chr18:68187456-72475878 chr18:69109003-71975801 7.0885 2866701 20001 20001 19 | 18 chr18 chr18:71475536-75502550 chr18:71975802-75002217 7.61529 3026321 20001 20001 20 | 19 chr18 chr18:74502096-1000000000 chr18:75002218-1000000000 6.45691 3014893 22084 22084 21 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr19.txt: -------------------------------------------------------------------------------- 1 | 0 19 19:1-3324701 19:1-2824395 9.46364 2754393 20201 20201 2 | 1 19 19:2324384-6453796 19:2824396-5851826 9.22967 3027388 20201 20201 3 | 2 19 19:5351734-9278629 19:5851827-8778626 8.8917 2926665 20201 20201 4 | 3 19 19:8278615-13297962 19:8778627-12242730 5.16941 3463993 20201 20201 5 | 4 19 19:11444131-16373524 19:12242731-15782262 6.59233 3539518 20201 20201 6 | 5 19 19:15187946-20617092 19:15782263-19151243 6.7931 3368968 20201 20201 7 | 6 19 19:18503019-30113381 19:19151244-29389196 4.00089 10237940 49771 49771 8 | 7 19 19:23480008-33726577 19:29389197-32881933 5.25325 3492638 20201 20201 9 | 8 19 19:32144393-38696127 19:32881934-36356279 6.49244 3474185 20201 20201 10 | 9 19 19:35853485-41691445 19:36356280-41000587 4.00077 4644104 24546 24546 11 | 10 19 19:40273866-45235202 19:41000588-44627317 4.00008 3626561 22155 22155 12 | 11 19 19:43958252-48740487 19:44627318-48240510 6.78467 3613128 20201 20201 13 | 12 19 19:47552574-51823504 19:48240511-51323369 7.14269 3082825 20201 20201 14 | 13 19 19:50823174-54385820 19:51323370-53885589 8.4622 2562134 20201 20201 15 | 14 19 19:53385591-56665891 19:53885590-56165788 9.15557 2279988 20201 20201 16 | 15 19 19:55665689-1000000000 19:56165789-1000000000 6.3359 2952862 18893 18893 17 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr19_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr19 chr19:1-3324701 chr19:1-2824395 9.46364 2754393 20201 20201 2 | 1 chr19 chr19:2324384-6453796 chr19:2824396-5851826 9.22967 3027388 20201 20201 3 | 2 chr19 chr19:5351734-9278629 chr19:5851827-8778626 8.8917 2926665 20201 20201 4 | 3 chr19 chr19:8278615-13297962 chr19:8778627-12242730 5.16941 3463993 20201 20201 5 | 4 chr19 chr19:11444131-16373524 chr19:12242731-15782262 6.59233 3539518 20201 20201 6 | 5 chr19 chr19:15187946-20617092 chr19:15782263-19151243 6.7931 3368968 20201 20201 7 | 6 chr19 chr19:18503019-30113381 chr19:19151244-29389196 4.00089 10237940 49771 49771 8 | 7 chr19 chr19:23480008-33726577 chr19:29389197-32881933 5.25325 3492638 20201 20201 9 | 8 chr19 chr19:32144393-38696127 chr19:32881934-36356279 6.49244 3474185 20201 20201 10 | 9 chr19 chr19:35853485-41691445 chr19:36356280-41000587 4.00077 4644104 24546 24546 11 | 10 chr19 chr19:40273866-45235202 chr19:41000588-44627317 4.00008 3626561 22155 22155 12 | 11 chr19 chr19:43958252-48740487 chr19:44627318-48240510 6.78467 3613128 20201 20201 13 | 12 chr19 chr19:47552574-51823504 chr19:48240511-51323369 7.14269 3082825 20201 20201 14 | 13 chr19 chr19:50823174-54385820 chr19:51323370-53885589 8.4622 2562134 20201 20201 15 | 14 chr19 chr19:53385591-56665891 chr19:53885590-56165788 9.15557 2279988 20201 20201 16 | 15 chr19 chr19:55665689-1000000000 chr19:56165789-1000000000 6.3359 2952862 18893 18893 17 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr20.txt: -------------------------------------------------------------------------------- 1 | 0 20 20:1-3836457 20:1-3205511 10.2008 3144063 20001 20001 2 | 1 20 20:2674735-6763102 20:3205512-6263187 9.66014 3057131 20001 20001 3 | 2 20 20:5763016-10187086 20:6263188-9686959 6.64069 3423532 20001 20001 4 | 3 20 20:9133829-13692244 20:9686960-13192192 6.85716 3505091 20001 20001 5 | 4 20 20:12654206-17488415 20:13192193-16750354 6.21661 3557966 20001 20001 6 | 5 20 20:16198482-20774305 20:16750355-19943806 5.99071 3193271 20001 20001 7 | 6 20 20:19443659-24746595 20:19943807-23997127 4.00006 4052990 21957 21957 8 | 7 20 20:23031110-36594180 20:23997128-35898285 4.00031 11900903 40838 40838 9 | 8 20 20:32468025-40940339 20:35898286-40017804 4.74372 4119510 20001 20001 10 | 9 20 20:39086493-44833056 20:40017805-43840707 6.62976 3822891 20001 20001 11 | 10 20 20:43098389-48144499 20:43840708-47169041 6.08035 3328320 20001 20001 12 | 11 20 20:46669023-51632483 20:47169042-50714357 6.25855 3544807 20001 20001 13 | 12 20 20:50214629-54590999 20:50714358-54090697 6.64174 3375763 20001 20001 14 | 13 20 20:53590593-57620443 20:54090698-57120391 8.47116 3029571 20001 20001 15 | 14 20 20:56620429-60800971 20:57120392-60300956 9.4644 3180500 20001 20001 16 | 15 20 20:59800916-1000000000 20:60300957-1000000000 6.4067 2663997 17874 17874 17 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr20_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr20 chr20:1-3836457 chr20:1-3205511 10.2008 3144063 20001 20001 2 | 1 chr20 chr20:2674735-6763102 chr20:3205512-6263187 9.66014 3057131 20001 20001 3 | 2 chr20 chr20:5763016-10187086 chr20:6263188-9686959 6.64069 3423532 20001 20001 4 | 3 chr20 chr20:9133829-13692244 chr20:9686960-13192192 6.85716 3505091 20001 20001 5 | 4 chr20 chr20:12654206-17488415 chr20:13192193-16750354 6.21661 3557966 20001 20001 6 | 5 chr20 chr20:16198482-20774305 chr20:16750355-19943806 5.99071 3193271 20001 20001 7 | 6 chr20 chr20:19443659-24746595 chr20:19943807-23997127 4.00006 4052990 21957 21957 8 | 7 chr20 chr20:23031110-36594180 chr20:23997128-35898285 4.00031 11900903 40838 40838 9 | 8 chr20 chr20:32468025-40940339 chr20:35898286-40017804 4.74372 4119510 20001 20001 10 | 9 chr20 chr20:39086493-44833056 chr20:40017805-43840707 6.62976 3822891 20001 20001 11 | 10 chr20 chr20:43098389-48144499 chr20:43840708-47169041 6.08035 3328320 20001 20001 12 | 11 chr20 chr20:46669023-51632483 chr20:47169042-50714357 6.25855 3544807 20001 20001 13 | 12 chr20 chr20:50214629-54590999 chr20:50714358-54090697 6.64174 3375763 20001 20001 14 | 13 chr20 chr20:53590593-57620443 chr20:54090698-57120391 8.47116 3029571 20001 20001 15 | 14 chr20 chr20:56620429-60800971 chr20:57120392-60300956 9.4644 3180500 20001 20001 16 | 15 chr20 chr20:59800916-1000000000 chr20:60300957-1000000000 6.4067 2663997 17874 17874 17 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr21.txt: -------------------------------------------------------------------------------- 1 | 0 21 21:1-17917666 21:1-17417670 5.78136 8006204 21301 21301 2 | 1 21 21:16802554-21087077 21:17417671-20463989 8.79998 3046218 21301 21301 3 | 2 21 21:19818751-24740836 21:20463990-23669449 5.76756 3205415 21301 21301 4 | 3 21 21:23164751-27812401 21:23669450-27054334 4.00007 3384838 22644 22644 5 | 4 21 21:25963843-31549830 21:27054335-30467233 5.53931 3412770 21301 21301 6 | 5 21 21:29292208-34714705 21:30467234-34214850 4.72001 3747329 21301 21301 7 | 6 21 21:33422289-38711704 21:34214851-38063140 6.48019 3847998 21301 21301 8 | 7 21 21:37365435-42140070 21:38063141-41639914 7.21777 3576631 21301 21301 9 | 8 21 21:41139716-45653275 21:41639915-44747555 9.27583 3107540 21301 21301 10 | 9 21 21:44247527-1000000000 21:44747556-1000000000 5.23668 3372033 22767 22767 11 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr21_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr21 chr21:1-17917666 chr21:1-17417670 5.78136 8006204 21301 21301 2 | 1 chr21 chr21:16802554-21087077 chr21:17417671-20463989 8.79998 3046218 21301 21301 3 | 2 chr21 chr21:19818751-24740836 chr21:20463990-23669449 5.76756 3205415 21301 21301 4 | 3 chr21 chr21:23164751-27812401 chr21:23669450-27054334 4.00007 3384838 22644 22644 5 | 4 chr21 chr21:25963843-31549830 chr21:27054335-30467233 5.53931 3412770 21301 21301 6 | 5 chr21 chr21:29292208-34714705 chr21:30467234-34214850 4.72001 3747329 21301 21301 7 | 6 chr21 chr21:33422289-38711704 chr21:34214851-38063140 6.48019 3847998 21301 21301 8 | 7 chr21 chr21:37365435-42140070 chr21:38063141-41639914 7.21777 3576631 21301 21301 9 | 8 chr21 chr21:41139716-45653275 chr21:41639915-44747555 9.27583 3107540 21301 21301 10 | 9 chr21 chr21:44247527-1000000000 chr21:44747556-1000000000 5.23668 3372033 22767 22767 11 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr22.txt: -------------------------------------------------------------------------------- 1 | 0 22 22:1-20377081 22:1-19876935 10.8365 3826758 21401 21401 2 | 1 22 22:19376929-24104069 22:19876936-23604061 9.38073 3727041 21401 21401 3 | 2 22 22:23104069-27176336 22:23604062-26676171 6.44098 3072016 21401 21401 4 | 3 22 22:26176224-32537615 22:26676172-30683195 7.76547 4006864 21401 21401 5 | 4 22 22:28714300-35401180 22:30683196-34360842 4.90577 3677488 21401 21401 6 | 5 22 22:33842875-38504673 22:34360843-37763852 6.83964 3402931 21401 21401 7 | 6 22 22:37263846-43571315 22:37763853-42292922 4.22869 4529060 21401 21401 8 | 7 22 22:39941632-45914461 22:42292923-45414486 6.71003 3121535 21401 21401 9 | 8 22 22:44914354-48865976 22:45414487-48365259 7.03059 2950731 21401 21401 10 | 9 22 22:47865190-1000000000 22:48365260-1000000000 9.99908 2878891 24545 24545 11 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr22_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr22 chr22:1-20377081 chr22:1-19876935 10.8365 3826758 21401 21401 2 | 1 chr22 chr22:19376929-24104069 chr22:19876936-23604061 9.38073 3727041 21401 21401 3 | 2 chr22 chr22:23104069-27176336 chr22:23604062-26676171 6.44098 3072016 21401 21401 4 | 3 chr22 chr22:26176224-32537615 chr22:26676172-30683195 7.76547 4006864 21401 21401 5 | 4 chr22 chr22:28714300-35401180 chr22:30683196-34360842 4.90577 3677488 21401 21401 6 | 5 chr22 chr22:33842875-38504673 chr22:34360843-37763852 6.83964 3402931 21401 21401 7 | 6 chr22 chr22:37263846-43571315 chr22:37763853-42292922 4.22869 4529060 21401 21401 8 | 7 chr22 chr22:39941632-45914461 chr22:42292923-45414486 6.71003 3121535 21401 21401 9 | 8 chr22 chr22:44914354-48865976 chr22:45414487-48365259 7.03059 2950731 21401 21401 10 | 9 chr22 chr22:47865190-1000000000 chr22:48365260-1000000000 9.99908 2878891 24545 24545 11 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr6.txt: -------------------------------------------------------------------------------- 1 | 0 6 6:1-3744668 6:1-3244669 8.18951 3180685 20101 20101 2 | 1 6 6:2744616-6718718 6:3244670-6218769 7.3358 2974028 20101 20101 3 | 2 6 6:5718682-10107596 6:6218770-9239911 5.94081 3020866 20101 20101 4 | 3 6 6:8740041-13352549 6:9239912-12557626 6.26058 3317351 20101 20101 5 | 4 6 6:12057040-16683672 6:12557627-16183819 5.03154 3625642 20101 20101 6 | 5 6 6:15064287-20110204 6:16183820-19608676 4.33211 3424376 20101 20101 7 | 6 6 6:18472693-23461573 6:19608677-22961415 5.73542 3352594 20101 20101 8 | 7 6 6:22199461-29819325 6:22961416-25960807 4.63221 2999323 20101 20101 9 | 8 6 6:24974815-34073717 6:25960808-33573739 4.00006 7612896 80822 80822 10 | 9 6 6:32702813-37764977 6:33573740-37265017 4.1109 3691186 20101 20101 11 | 10 6 6:36753140-41401126 6:37265018-40749204 4.49706 3483991 20101 20101 12 | 11 6 6:40236613-45565682 6:40749205-44460742 7.81951 3711289 20101 20101 13 | 12 6 6:43960726-51399078 6:44460743-48520565 4.00072 4059676 21810 21810 14 | 13 6 6:47207546-55193889 6:48520566-53556621 4.00465 5035455 28507 28507 15 | 14 6 6:53057090-67853444 6:53556622-66792974 4.00004 13235734 59403 59403 16 | 15 6 6:65245009-73533851 6:66792975-72248347 4.00138 5455270 33796 33796 17 | 16 6 6:71012991-80137259 6:72248348-78166240 4.01205 5917719 34056 34056 18 | 17 6 6:76627725-87766020 6:78166241-85209974 4.00051 7043331 42119 42119 19 | 18 6 6:83709756-91134449 6:85209975-90634434 4.00248 5424166 29830 29830 20 | 19 6 6:89276488-95678639 6:90634435-94266658 4.51985 3632176 20101 20101 21 | 20 6 6:93143397-100760409 6:94266659-99674570 4.01404 5407865 26470 26470 22 | 21 6 6:98753938-105860107 6:99674571-104576237 4 4901637 28643 28643 23 | 22 6 6:103483902-109125351 6:104576238-108328656 5.56921 3752397 20101 20101 24 | 23 6 6:107508918-114220349 6:108328657-112694928 4.00007 4366234 21668 21668 25 | 24 6 6:111410900-121904443 6:112694929-120093409 4 7398408 38509 38509 26 | 25 6 6:117998007-125120025 6:120093410-124470717 4.00214 4377229 25473 25473 27 | 26 6 6:123970586-130001307 6:124470718-129079580 4.00043 4608793 20933 20933 28 | 27 6 6:127535689-133056105 6:129079581-132556044 4.09235 3476415 20101 20101 29 | 28 6 6:131747913-136990909 6:132556045-136154714 4.56439 3598373 20101 20101 30 | 29 6 6:134819893-142296795 6:136154715-139814380 6.23158 3659379 20101 20101 31 | 30 6 6:139314262-146717031 6:139814381-144787178 4.01242 4972743 24358 24358 32 | 31 6 6:144158877-149420431 6:144787179-148920434 4.00909 4133131 22299 22299 33 | 32 6 6:148419935-152487003 6:148920435-151960379 5.36111 3039835 20101 20101 34 | 33 6 6:151441417-155806679 6:151960380-155306240 5.60332 3345790 20101 20101 35 | 34 6 6:154796972-159606762 6:155306241-158896129 5.34387 3589723 20101 20101 36 | 35 6 6:158026780-162570920 6:158896130-162070953 4.56036 3174562 20101 20101 37 | 36 6 6:161571066-165799614 6:162070954-165160395 6.29916 3089243 20101 20101 38 | 37 6 6:164660397-168504664 6:165160396-167896860 6.86279 2736337 20101 20101 39 | 38 6 6:167357052-1000000000 6:167896861-1000000000 5.01202 3156480 22181 22181 40 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr7.txt: -------------------------------------------------------------------------------- 1 | 0 7 7:1-3169416 7:1-2669478 4.24533 2654604 21901 21901 2 | 1 7 7:1791978-5698874 7:2669479-5198697 4.98259 2529130 21901 21901 3 | 2 7 7:4698423-8555696 7:5198698-8055796 5.70516 2856943 21901 21901 4 | 3 7 7:7555860-11548316 7:8055797-10782951 5.60611 2727016 21901 21901 5 | 4 7 7:9835512-14177303 7:10782952-13677241 4.00146 2894258 22986 22986 6 | 5 7 7:12918169-17530583 7:13677242-16828943 6.0765 3151617 21901 21901 7 | 6 7 7:16328729-20748700 7:16828944-20245827 5.13892 3416790 21901 21901 8 | 7 7 7:19416761-24587380 7:20245828-23729259 5.46456 3483089 21901 21901 9 | 8 7 7:22700539-28407123 7:23729260-27544364 4.67126 3814762 21901 21901 10 | 9 7 7:26541021-32134862 7:27544365-31533394 6.73314 3988935 21901 21901 11 | 10 7 7:31005514-36214678 7:31533395-35351719 4.21147 3818109 21901 21901 12 | 11 7 7:34142830-40926896 7:35351720-39086447 5.89883 3734499 21901 21901 13 | 12 7 7:38419878-44581150 7:39086448-43380651 4.8519 4294092 21901 21901 14 | 13 7 7:42496091-47924474 7:43380652-47424568 4.24585 4043775 21901 21901 15 | 14 7 7:46706331-52094417 7:47424569-51096871 4.00647 3672158 22310 22310 16 | 15 7 7:50256021-57523612 7:51096872-55664439 4.00001 4567379 33893 33893 17 | 16 7 7:54906161-70152464 7:55664440-68567306 4.00123 12902634 62154 62154 18 | 17 7 7:67810804-73992743 7:68567307-73333823 4.01911 4766357 22156 22156 19 | 18 7 7:71869727-78744729 7:73333824-78176991 6.29035 4843088 21901 21901 20 | 19 7 7:77676735-82485299 7:78176992-81985175 4.99687 3808168 21901 21901 21 | 20 7 7:81043532-89108875 7:81985176-87825265 4.00809 5839990 31821 31821 22 | 21 7 7:85521351-93530041 7:87825266-92692625 4.00036 4867119 24499 24499 23 | 22 7 7:91265236-98157619 7:92692626-97260663 4.70649 4567797 21901 21901 24 | 23 7 7:96573844-103466418 7:97260664-102086363 4.00178 4825594 24878 24878 25 | 24 7 7:101141971-106537672 7:102086364-106037444 4.22141 3950998 21901 21901 26 | 25 7 7:105537448-111591771 7:106037445-109962989 4.6597 3925350 21901 21901 27 | 26 7 7:108745980-116877042 7:109962990-115512731 4.01071 5549541 25339 25339 28 | 27 7 7:113721788-125385824 7:115512732-122993777 4.00316 7480958 33943 33943 29 | 28 7 7:121226224-130587251 7:122993778-129622362 4.00012 6628399 34944 34944 30 | 29 7 7:128431295-135218966 7:129622363-134123808 5.38144 4501253 21901 21901 31 | 30 7 7:132181422-138673233 7:134123809-138173394 5.19679 4049363 21901 21901 32 | 31 7 7:137673577-143276134 7:138173395-142248553 6.91522 4074944 21901 21901 33 | 32 7 7:141691514-147316714 7:142248554-146681082 4.00323 4432394 23072 23072 34 | 33 7 7:145719574-150486649 7:146681083-149850978 5.5936 3169701 21901 21901 35 | 34 7 7:149351050-153564166 7:149850979-153064224 8.09351 3213099 21901 21901 36 | 35 7 7:152564099-156543569 7:153064225-156043603 10.1463 2979269 21901 21901 37 | 36 7 7:155542808-1000000000 7:156043604-1000000000 5.09877 3084927 24099 24099 38 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr8.txt: -------------------------------------------------------------------------------- 1 | 0 8 8:1-2636022 8:1-2135930 4.26777 2124122 20101 20101 2 | 1 8 8:1635715-4636093 8:2135931-4136077 5.9738 2000087 27353 27353 3 | 2 8 8:3636082-6636119 8:4136078-6136166 5.45018 2000011 26695 26695 4 | 3 8 8:5635996-9692258 8:6136167-8971473 4.39531 2835251 20101 20101 5 | 4 8 8:8082605-12142216 8:8971474-11604095 4.1736 2632549 20101 20101 6 | 5 8 8:11104111-14622013 8:11604096-13817413 6.45367 2213100 20101 20101 7 | 6 8 8:13235841-17141481 8:13817414-16641337 4.00289 2823775 27308 27308 8 | 7 8 8:15990073-19375932 8:16641338-18875859 5.05853 2234496 20101 20101 9 | 8 8 8:18375812-22107986 8:18875860-21607496 5.53154 2731594 20101 20101 10 | 9 8 8:21107389-25539830 8:21607497-24930974 5.24033 3323309 20101 20101 11 | 10 8 8:23952921-28691876 8:24930975-28191406 4.88723 3260181 20101 20101 12 | 11 8 8:27575876-34083175 8:28191407-32040688 5.3517 3848918 20101 20101 13 | 12 8 8:30869803-38815855 8:32040689-38017572 4.00251 5976308 28986 28986 14 | 13 8 8:37493970-49832249 8:38017573-41719659 4.00575 3701683 20358 20358 15 | 14 8 8:40977363-55914369 8:41719660-54547953 4.0004 12828175 50758 50758 16 | 15 8 8:53330772-59799367 8:54547954-59061806 4.00277 4513820 25266 25266 17 | 16 8 8:58341514-65761561 8:59061807-63395199 4.00144 4333280 23109 23109 18 | 17 8 8:62005820-70178113 8:63395200-69642137 4.00203 6246762 29751 29751 19 | 18 8 8:68907941-74082215 8:69642138-73310194 6.31848 3667831 20101 20101 20 | 19 8 8:72810317-80655159 8:73310195-78633307 4.00517 5322914 28795 28795 21 | 20 8 8:76578385-87242775 8:78633308-84216578 4.0078 5583162 30250 30250 22 | 21 8 8:82368891-94165158 8:84216579-93040426 4.00156 8823779 45019 45019 23 | 22 8 8:90878905-98018578 8:93040427-97061715 4.5966 4021287 20101 20101 24 | 23 8 8:96535008-101978019 8:97061716-101477953 4.00055 4416231 20396 20396 25 | 24 8 8:99372151-106594028 8:101477954-105089067 5.5959 3611072 20101 20101 26 | 25 8 8:103760362-114954651 8:105089068-111457953 4.00652 6368661 32501 32501 27 | 26 8 8:109013218-119497769 8:111457954-118534762 4.0001 7076510 34990 34990 28 | 27 8 8:117817353-123528645 8:118534763-122627609 4.0036 4092577 23459 23459 29 | 28 8 8:121921495-126775348 8:122627610-126275438 6.11444 3647516 20101 20101 30 | 29 8 8:125600615-130395838 8:126275439-129495603 7.08168 3219846 20101 20101 31 | 30 8 8:128995614-133500630 8:129495604-132887834 4.00012 3391966 20381 20381 32 | 31 8 8:131984878-137153984 8:132887835-136110209 5.75398 3222234 20101 20101 33 | 32 8 8:135498886-139812024 8:136110210-139312103 4.00005 3201652 20318 20318 34 | 33 8 8:138812258-143071056 8:139312104-142571060 6.51265 3258738 20101 20101 35 | 34 8 8:142063964-1000000000 8:142571061-1000000000 5.16187 3732709 22793 22793 36 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr8_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr8 chr8:1-2636022 chr8:1-2135930 4.26777 2124122 20101 20101 2 | 1 chr8 chr8:1635715-4636093 chr8:2135931-4136077 5.9738 2000087 27353 27353 3 | 2 chr8 chr8:3636082-6636119 chr8:4136078-6136166 5.45018 2000011 26695 26695 4 | 3 chr8 chr8:5635996-9692258 chr8:6136167-8971473 4.39531 2835251 20101 20101 5 | 4 chr8 chr8:8082605-12142216 chr8:8971474-11604095 4.1736 2632549 20101 20101 6 | 5 chr8 chr8:11104111-14622013 chr8:11604096-13817413 6.45367 2213100 20101 20101 7 | 6 chr8 chr8:13235841-17141481 chr8:13817414-16641337 4.00289 2823775 27308 27308 8 | 7 chr8 chr8:15990073-19375932 chr8:16641338-18875859 5.05853 2234496 20101 20101 9 | 8 chr8 chr8:18375812-22107986 chr8:18875860-21607496 5.53154 2731594 20101 20101 10 | 9 chr8 chr8:21107389-25539830 chr8:21607497-24930974 5.24033 3323309 20101 20101 11 | 10 chr8 chr8:23952921-28691876 chr8:24930975-28191406 4.88723 3260181 20101 20101 12 | 11 chr8 chr8:27575876-34083175 chr8:28191407-32040688 5.3517 3848918 20101 20101 13 | 12 chr8 chr8:30869803-38815855 chr8:32040689-38017572 4.00251 5976308 28986 28986 14 | 13 chr8 chr8:37493970-49832249 chr8:38017573-41719659 4.00575 3701683 20358 20358 15 | 14 chr8 chr8:40977363-55914369 chr8:41719660-54547953 4.0004 12828175 50758 50758 16 | 15 chr8 chr8:53330772-59799367 chr8:54547954-59061806 4.00277 4513820 25266 25266 17 | 16 chr8 chr8:58341514-65761561 chr8:59061807-63395199 4.00144 4333280 23109 23109 18 | 17 chr8 chr8:62005820-70178113 chr8:63395200-69642137 4.00203 6246762 29751 29751 19 | 18 chr8 chr8:68907941-74082215 chr8:69642138-73310194 6.31848 3667831 20101 20101 20 | 19 chr8 chr8:72810317-80655159 chr8:73310195-78633307 4.00517 5322914 28795 28795 21 | 20 chr8 chr8:76578385-87242775 chr8:78633308-84216578 4.0078 5583162 30250 30250 22 | 21 chr8 chr8:82368891-94165158 chr8:84216579-93040426 4.00156 8823779 45019 45019 23 | 22 chr8 chr8:90878905-98018578 chr8:93040427-97061715 4.5966 4021287 20101 20101 24 | 23 chr8 chr8:96535008-101978019 chr8:97061716-101477953 4.00055 4416231 20396 20396 25 | 24 chr8 chr8:99372151-106594028 chr8:101477954-105089067 5.5959 3611072 20101 20101 26 | 25 chr8 chr8:103760362-114954651 chr8:105089068-111457953 4.00652 6368661 32501 32501 27 | 26 chr8 chr8:109013218-119497769 chr8:111457954-118534762 4.0001 7076510 34990 34990 28 | 27 chr8 chr8:117817353-123528645 chr8:118534763-122627609 4.0036 4092577 23459 23459 29 | 28 chr8 chr8:121921495-126775348 chr8:122627610-126275438 6.11444 3647516 20101 20101 30 | 29 chr8 chr8:125600615-130395838 chr8:126275439-129495603 7.08168 3219846 20101 20101 31 | 30 chr8 chr8:128995614-133500630 chr8:129495604-132887834 4.00012 3391966 20381 20381 32 | 31 chr8 chr8:131984878-137153984 chr8:132887835-136110209 5.75398 3222234 20101 20101 33 | 32 chr8 chr8:135498886-139812024 chr8:136110210-139312103 4.00005 3201652 20318 20318 34 | 33 chr8 chr8:138812258-143071056 chr8:139312104-142571060 6.51265 3258738 20101 20101 35 | 34 chr8 chr8:142063964-1000000000 chr8:142571061-1000000000 5.16187 3732709 22793 22793 36 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr9.txt: -------------------------------------------------------------------------------- 1 | 0 9 9:1-2695548 9:1-2195503 6.63714 2184995 20001 20001 2 | 1 9 9:1695349-5524353 9:2195504-4782174 6.82302 2586399 20001 20001 3 | 2 9 9:4282334-8154940 9:4782175-7654856 4.15973 2872434 20001 20001 4 | 3 9 9:7154496-10704224 9:7654857-10204203 5.96843 2549286 20001 20001 5 | 4 9 9:9703994-13607506 9:10204204-13060649 4.00001 2856366 22895 22895 6 | 5 9 9:12560591-16590711 9:13060650-16089824 6.30479 3029062 20001 20001 7 | 6 9 9:15086083-19457889 9:16089825-18806427 4.57564 2716452 20001 20001 8 | 7 9 9:18270486-22912231 9:18806428-22012140 4.51271 3205551 20001 20001 9 | 8 9 9:21151143-25690778 9:22012141-25184286 4.79341 3171914 20001 20001 10 | 9 9 9:24658725-28792143 9:25184287-28236712 5.68152 3052265 20001 20001 11 | 10 9 9:27716712-33546032 9:28236713-32739550 4.00203 4502772 31231 31231 12 | 11 9 9:32109266-38287031 9:32739551-37413449 4.00848 4673814 22565 22565 13 | 12 9 9:36741918-71285573 9:37413450-70484957 4.28048 33071459 24627 24627 14 | 13 9 9:69076098-76636641 9:70484958-74786095 4.42287 4301010 20001 20001 15 | 14 9 9:74086824-79228042 9:74786096-78727980 4.63342 3941769 20001 20001 16 | 15 9 9:78227925-82890843 9:78727981-82092242 5.86233 3364246 20001 20001 17 | 16 9 9:81510996-86299402 9:82092243-85799242 4.35971 3706956 20001 20001 18 | 17 9 9:84897843-90021562 9:85799243-89342593 4.99599 3543192 20001 20001 19 | 18 9 9:88722095-93443422 9:89342594-92733505 5.24886 3390768 20001 20001 20 | 19 9 9:92209587-98411434 9:92733506-96678128 4.00062 3944559 21668 21668 21 | 20 9 9:95797206-103143203 9:96678129-101593838 4.03304 4915647 26139 26139 22 | 21 9 9:101021993-107583417 9:101593839-106491117 4.01145 4897264 27065 27065 23 | 22 9 9:105169450-110468185 9:106491118-109967955 4.00002 3476727 20437 20437 24 | 23 9 9:109156100-113876977 9:109967956-113146849 6.08543 3178703 20001 20001 25 | 24 9 9:112630438-117242498 9:113146850-116742203 5.13921 3595261 20001 20001 26 | 25 9 9:116241937-121341829 9:116742204-120301364 5.48562 3559126 20001 20001 27 | 26 9 9:119544499-124960615 9:120301365-124358751 4.67873 4057363 20001 20001 28 | 27 9 9:122767607-129232244 9:124358752-128475553 4.56316 4116628 20001 20001 29 | 28 9 9:126964034-132895783 9:128475554-132351416 5.12639 3875665 20001 20001 30 | 29 9 9:131850997-136481920 9:132351417-135981982 7.92915 3630437 20001 20001 31 | 30 9 9:135383455-139008782 9:135981983-138508908 10.6478 2526668 20001 20001 32 | 31 9 9:138008555-1000000000 9:138508909-1000000000 5.41971 2637623 15493 15493 33 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b37_4cM/chunks_chr9_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr9 chr9:1-2695548 chr9:1-2195503 6.63714 2184995 20001 20001 2 | 1 chr9 chr9:1695349-5524353 chr9:2195504-4782174 6.82302 2586399 20001 20001 3 | 2 chr9 chr9:4282334-8154940 chr9:4782175-7654856 4.15973 2872434 20001 20001 4 | 3 chr9 chr9:7154496-10704224 chr9:7654857-10204203 5.96843 2549286 20001 20001 5 | 4 chr9 chr9:9703994-13607506 chr9:10204204-13060649 4.00001 2856366 22895 22895 6 | 5 chr9 chr9:12560591-16590711 chr9:13060650-16089824 6.30479 3029062 20001 20001 7 | 6 chr9 chr9:15086083-19457889 chr9:16089825-18806427 4.57564 2716452 20001 20001 8 | 7 chr9 chr9:18270486-22912231 chr9:18806428-22012140 4.51271 3205551 20001 20001 9 | 8 chr9 chr9:21151143-25690778 chr9:22012141-25184286 4.79341 3171914 20001 20001 10 | 9 chr9 chr9:24658725-28792143 chr9:25184287-28236712 5.68152 3052265 20001 20001 11 | 10 chr9 chr9:27716712-33546032 chr9:28236713-32739550 4.00203 4502772 31231 31231 12 | 11 chr9 chr9:32109266-38287031 chr9:32739551-37413449 4.00848 4673814 22565 22565 13 | 12 chr9 chr9:36741918-71285573 chr9:37413450-70484957 4.28048 33071459 24627 24627 14 | 13 chr9 chr9:69076098-76636641 chr9:70484958-74786095 4.42287 4301010 20001 20001 15 | 14 chr9 chr9:74086824-79228042 chr9:74786096-78727980 4.63342 3941769 20001 20001 16 | 15 chr9 chr9:78227925-82890843 chr9:78727981-82092242 5.86233 3364246 20001 20001 17 | 16 chr9 chr9:81510996-86299402 chr9:82092243-85799242 4.35971 3706956 20001 20001 18 | 17 chr9 chr9:84897843-90021562 chr9:85799243-89342593 4.99599 3543192 20001 20001 19 | 18 chr9 chr9:88722095-93443422 chr9:89342594-92733505 5.24886 3390768 20001 20001 20 | 19 chr9 chr9:92209587-98411434 chr9:92733506-96678128 4.00062 3944559 21668 21668 21 | 20 chr9 chr9:95797206-103143203 chr9:96678129-101593838 4.03304 4915647 26139 26139 22 | 21 chr9 chr9:101021993-107583417 chr9:101593839-106491117 4.01145 4897264 27065 27065 23 | 22 chr9 chr9:105169450-110468185 chr9:106491118-109967955 4.00002 3476727 20437 20437 24 | 23 chr9 chr9:109156100-113876977 chr9:109967956-113146849 6.08543 3178703 20001 20001 25 | 24 chr9 chr9:112630438-117242498 chr9:113146850-116742203 5.13921 3595261 20001 20001 26 | 25 chr9 chr9:116241937-121341829 chr9:116742204-120301364 5.48562 3559126 20001 20001 27 | 26 chr9 chr9:119544499-124960615 chr9:120301365-124358751 4.67873 4057363 20001 20001 28 | 27 chr9 chr9:122767607-129232244 chr9:124358752-128475553 4.56316 4116628 20001 20001 29 | 28 chr9 chr9:126964034-132895783 chr9:128475554-132351416 5.12639 3875665 20001 20001 30 | 29 chr9 chr9:131850997-136481920 chr9:132351417-135981982 7.92915 3630437 20001 20001 31 | 30 chr9 chr9:135383455-139008782 chr9:135981983-138508908 10.6478 2526668 20001 20001 32 | 31 chr9 chr9:138008555-1000000000 chr9:138508909-1000000000 5.41971 2637623 15493 15493 33 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr1.txt: -------------------------------------------------------------------------------- 1 | 0 1 1:1-17104654 1:1-16211546 2 | 1 1 1:15359625-33781240 1:16211547-32912083 3 | 2 1 1:31215082-54504543 1:32912084-53905248 4 | 3 1 1:53297397-73006717 1:53905249-70795955 5 | 4 1 1:69689533-91065448 1:70795956-90120414 6 | 5 1 1:89346294-109246606 1:90120415-108032693 7 | 6 1 1:107388953-152564670 1:108032694-150130228 8 | 7 1 1:149517389-168622808 1:150130229-168122803 9 | 8 1 1:167563744-187003659 1:168122804-185805917 10 | 9 1 1:184654957-206542354 1:185805918-206001471 11 | 10 1 1:205478443-223480171 1:206001472-222640418 12 | 11 1 1:221719674-1000000000 1:222640419-1000000000 13 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr10.txt: -------------------------------------------------------------------------------- 1 | 0 10 10:1-16637292 10:1-16010505 2 | 1 10 10:15435012-33506537 10:16010506-32327229 3 | 2 10 10:30788681-57663231 10:32327230-55515452 4 | 3 10 10:54643594-75924707 10:55515453-74162521 5 | 4 10 10:71749908-93488832 10:74162522-91905640 6 | 5 10 10:91114596-112850006 10:91905641-112291006 7 | 6 10 10:111357764-1000000000 10:112291007-1000000000 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr10_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr10 chr10:1-16637292 chr10:1-16010505 2 | 1 chr10 chr10:15435012-33506537 chr10:16010506-32327229 3 | 2 chr10 chr10:30788681-57663231 chr10:32327230-55515452 4 | 3 chr10 chr10:54643594-75924707 chr10:55515453-74162521 5 | 4 chr10 chr10:71749908-93488832 chr10:74162522-91905640 6 | 5 chr10 chr10:91114596-112850006 chr10:91905641-112291006 7 | 6 chr10 chr10:111357764-1000000000 chr10:112291007-1000000000 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr11.txt: -------------------------------------------------------------------------------- 1 | 0 11 11:1-17521082 11:1-16526896 2 | 1 11 11:15284651-34436864 11:16526897-33936862 3 | 2 11 11:33370815-63013771 11:33936863-62039066 4 | 3 11 11:61048837-81531769 11:62039067-80721452 5 | 4 11 11:80195734-101688264 11:80721453-100561657 6 | 5 11 11:99744971-119535856 11:100561658-118738891 7 | 6 11 11:117877855-1000000000 11:118738892-1000000000 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr11_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr11 chr11:1-17521082 chr11:1-16526896 2 | 1 chr11 chr11:15284651-34436864 chr11:16526897-33936862 3 | 2 chr11 chr11:33370815-63013771 chr11:33936863-62039066 4 | 3 chr11 chr11:61048837-81531769 chr11:62039067-80721452 5 | 4 chr11 chr11:80195734-101688264 chr11:80721453-100561657 6 | 5 chr11 chr11:99744971-119535856 chr11:100561658-118738891 7 | 6 chr11 chr11:117877855-1000000000 chr11:118738892-1000000000 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr12.txt: -------------------------------------------------------------------------------- 1 | 0 12 12:1-17220000 12:1-16443583 2 | 1 12 12:15927502-40128020 12:16443584-33029175 3 | 2 12 12:32080704-59543690 12:33029176-58386411 4 | 3 12 12:57040269-78247530 12:58386412-77541141 5 | 4 12 12:76736835-98869228 12:77541142-97810702 6 | 5 12 12:97123994-117134866 12:97810703-116620164 7 | 6 12 12:115933856-1000000000 12:116620165-1000000000 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr12_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr12 chr12:1-17220000 chr12:1-16443583 2 | 1 chr12 chr12:15927502-40128020 chr12:16443584-33029175 3 | 2 chr12 chr12:32080704-59543690 chr12:33029176-58386411 4 | 3 chr12 chr12:57040269-78247530 chr12:58386412-77541141 5 | 4 chr12 chr12:76736835-98869228 chr12:77541142-97810702 6 | 5 chr12 chr12:97123994-117134866 chr12:97810703-116620164 7 | 6 chr12 chr12:115933856-1000000000 chr12:116620165-1000000000 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr13.txt: -------------------------------------------------------------------------------- 1 | 0 13 13:1-34144976 13:1-33505011 2 | 1 13 13:32978148-51042983 13:33505012-50161797 3 | 2 13 13:48710796-73735090 13:50161798-72986714 4 | 3 13 13:72382121-94409671 13:72986715-93909388 5 | 4 13 13:92631386-1000000000 13:93909389-1000000000 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr13_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr13 chr13:1-34144976 chr13:1-33505011 2 | 1 chr13 chr13:32978148-51042983 chr13:33505012-50161797 3 | 2 chr13 chr13:48710796-73735090 chr13:50161798-72986714 4 | 3 chr13 chr13:72382121-94409671 chr13:72986715-93909388 5 | 4 chr13 chr13:92631386-1000000000 chr13:93909389-1000000000 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr14.txt: -------------------------------------------------------------------------------- 1 | 0 14 14:1-36265343 14:1-35381663 2 | 1 14 14:34302395-56484699 14:35381664-55855563 3 | 2 14 14:54724004-75233874 14:55855564-73800005 4 | 3 14 14:72604736-91216786 14:73800006-90516044 5 | 4 14 14:90016060-1000000000 14:90516045-1000000000 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr14_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr14 chr14:1-36265343 chr14:1-35381663 2 | 1 chr14 chr14:34302395-56484699 chr14:35381664-55855563 3 | 2 chr14 chr14:54724004-75233874 chr14:55855564-73800005 4 | 3 chr14 chr14:72604736-91216786 chr14:73800006-90516044 5 | 4 chr14 chr14:90016060-1000000000 chr14:90516045-1000000000 6 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr15.txt: -------------------------------------------------------------------------------- 1 | 0 15 15:1-38957959 15:1-38457957 2 | 1 15 15:37673890-58147255 15:38457958-57516289 3 | 2 15 15:56846237-81323514 15:57516290-80823509 4 | 3 15 15:80323509-1000000000 15:80823510-1000000000 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr15_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr15 chr15:1-38957959 chr15:1-38457957 2 | 1 chr15 chr15:37673890-58147255 chr15:38457958-57516289 3 | 2 chr15 chr15:56846237-81323514 chr15:57516290-80823509 4 | 3 chr15 chr15:80323509-1000000000 chr15:80823510-1000000000 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr16.txt: -------------------------------------------------------------------------------- 1 | 0 16 16:1-16606071 16:1-16010061 2 | 1 16 16:15510075-51318557 16:16010062-50818556 3 | 2 16 16:49928866-71006718 16:50818557-69401446 4 | 3 16 16:66312265-1000000000 16:69401447-1000000000 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr16_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr16 chr16:1-16606071 chr16:1-16010061 2 | 1 chr16 chr16:15510075-51318557 chr16:16010062-50818556 3 | 2 chr16 chr16:49928866-71006718 chr16:50818557-69401446 4 | 3 chr16 chr16:66312265-1000000000 chr16:69401447-1000000000 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr17.txt: -------------------------------------------------------------------------------- 1 | 0 17 17:1-16983740 17:1-16113662 2 | 1 17 17:15376211-42931046 17:16113663-41636715 3 | 2 17 17:40578292-63501461 17:41636716-61993266 4 | 3 17 17:61341850-1000000000 17:61993267-1000000000 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr17_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr17 chr17:1-16983740 chr17:1-16113662 2 | 1 chr17 chr17:15376211-42931046 chr17:16113663-41636715 3 | 2 chr17 chr17:40578292-63501461 chr17:41636716-61993266 4 | 3 chr17 chr17:61341850-1000000000 chr17:61993267-1000000000 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr18.txt: -------------------------------------------------------------------------------- 1 | 0 18 18:1-24210253 18:1-22583755 2 | 1 18 18:22027852-45389976 18:22583756-44320428 3 | 2 18 18:42357574-63521229 18:44320429-63021222 4 | 3 18 18:61793688-1000000000 18:63021223-1000000000 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr18_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr18 chr18:1-24210253 chr18:1-22583755 2 | 1 chr18 chr18:22027852-45389976 chr18:22583756-44320428 3 | 2 chr18 chr18:42357574-63521229 chr18:44320429-63021222 4 | 3 chr18 chr18:61793688-1000000000 chr18:63021223-1000000000 5 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr19.txt: -------------------------------------------------------------------------------- 1 | 0 19 19:1-16560845 19:1-16060838 2 | 1 19 19:15224212-38949246 19:16060839-37780538 3 | 2 19 19:35797333-1000000000 19:37780539-1000000000 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr19_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr19 chr19:1-16560845 chr19:1-16060838 2 | 1 chr19 chr19:15224212-38949246 chr19:16060839-37780538 3 | 2 chr19 chr19:35797333-1000000000 chr19:37780539-1000000000 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr1_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr1 chr1:1-17104654 chr1:1-16211546 2 | 1 chr1 chr1:15359625-33781240 chr1:16211547-32912083 3 | 2 chr1 chr1:31215082-54504543 chr1:32912084-53905248 4 | 3 chr1 chr1:53297397-73006717 chr1:53905249-70795955 5 | 4 chr1 chr1:69689533-91065448 chr1:70795956-90120414 6 | 5 chr1 chr1:89346294-109246606 chr1:90120415-108032693 7 | 6 chr1 chr1:107388953-152564670 chr1:108032694-150130228 8 | 7 chr1 chr1:149517389-168622808 chr1:150130229-168122803 9 | 8 chr1 chr1:167563744-187003659 chr1:168122804-185805917 10 | 9 chr1 chr1:184654957-206542354 chr1:185805918-206001471 11 | 10 chr1 chr1:205478443-223480171 chr1:206001472-222640418 12 | 11 chr1 chr1:221719674-1000000000 chr1:222640419-1000000000 13 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr2.txt: -------------------------------------------------------------------------------- 1 | 0 2 2:1-16510567 2:1-16010566 2 | 1 2 2:15510563-33850002 2:16010567-33350002 3 | 2 2 2:31327967-50590027 2:33350003-49350039 4 | 3 2 2:48599792-70457620 2:49350040-69005796 5 | 4 2 2:68394202-88139929 2:69005797-87639921 6 | 5 2 2:86334029-114830394 2:87639922-113780261 7 | 6 2 2:112718965-132988460 2:113780262-132451591 8 | 7 2 2:131938428-153146795 2:132451592-151384015 9 | 8 2 2:150488487-172482438 2:151384016-171907043 10 | 9 2 2:170628215-194748746 2:171907044-192640908 11 | 10 2 2:191936113-215073841 2:192640909-213372296 12 | 11 2 2:212535846-230645167 2:213372297-229728264 13 | 12 2 2:229228270-1000000000 2:229728265-1000000000 14 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr20.txt: -------------------------------------------------------------------------------- 1 | 0 20 20:1-17507629 20:1-16768980 2 | 1 20 20:16217843-43756999 20:16768981-43181961 3 | 2 20 20:42681957-1000000000 20:43181962-1000000000 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr20_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr20 chr20:1-17507629 chr20:1-16768980 2 | 1 chr20 chr20:16217843-43756999 chr20:16768981-43181961 3 | 2 chr20 chr20:42681957-1000000000 chr20:43181962-1000000000 4 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr21.txt: -------------------------------------------------------------------------------- 1 | 0 21 21:1-29824039 21:1-28173036 2 | 1 21 21:27673027-1000000000 21:28173037-1000000000 3 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr21_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr21 chr21:1-29824039 chr21:1-28173036 2 | 1 chr21 chr21:27673027-1000000000 chr21:28173037-1000000000 3 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr22.txt: -------------------------------------------------------------------------------- 1 | 0 22 22:1-33613738 22:1-33113736 2 | 1 22 22:32523221-1000000000 22:33113737-1000000000 3 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr22_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr22 chr22:1-33613738 chr22:1-33113736 2 | 1 chr22 chr22:32523221-1000000000 chr22:33113737-1000000000 3 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr2_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr2 chr2:1-16510567 chr2:1-16010566 2 | 1 chr2 chr2:15510563-33850002 chr2:16010567-33350002 3 | 2 chr2 chr2:31327967-50590027 chr2:33350003-49350039 4 | 3 chr2 chr2:48599792-70457620 chr2:49350040-69005796 5 | 4 chr2 chr2:68394202-88139929 chr2:69005797-87639921 6 | 5 chr2 chr2:86334029-114830394 chr2:87639922-113780261 7 | 6 chr2 chr2:112718965-132988460 chr2:113780262-132451591 8 | 7 chr2 chr2:131938428-153146795 chr2:132451592-151384015 9 | 8 chr2 chr2:150488487-172482438 chr2:151384016-171907043 10 | 9 chr2 chr2:170628215-194748746 chr2:171907044-192640908 11 | 10 chr2 chr2:191936113-215073841 chr2:192640909-213372296 12 | 11 chr2 chr2:212535846-230645167 chr2:213372297-229728264 13 | 12 chr2 chr2:229228270-1000000000 chr2:229728265-1000000000 14 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr3.txt: -------------------------------------------------------------------------------- 1 | 0 3 3:1-17112053 3:1-16265643 2 | 1 3 3:15145400-34200556 3:16265644-32871575 3 | 2 3 3:32302438-58724948 3:32871576-57433532 4 | 3 3 3:55909975-74400002 3:57433533-73879347 5 | 4 3 3:73366710-108863647 3:73879348-107432092 6 | 5 3 3:106616283-127359535 3:107432093-126423870 7 | 6 3 3:125217452-150277926 3:126423871-149482347 8 | 7 3 3:148964602-177396121 3:149482348-176740350 9 | 8 3 3:175834624-1000000000 3:176740351-1000000000 10 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr3_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr3 chr3:1-17112053 chr3:1-16265643 2 | 1 chr3 chr3:15145400-34200556 chr3:16265644-32871575 3 | 2 chr3 chr3:32302438-58724948 chr3:32871576-57433532 4 | 3 chr3 chr3:55909975-74400002 chr3:57433533-73879347 5 | 4 chr3 chr3:73366710-108863647 chr3:73879348-107432092 6 | 5 chr3 chr3:106616283-127359535 chr3:107432093-126423870 7 | 6 chr3 chr3:125217452-150277926 chr3:126423871-149482347 8 | 7 chr3 chr3:148964602-177396121 chr3:149482348-176740350 9 | 8 chr3 chr3:175834624-1000000000 chr3:176740351-1000000000 10 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr4.txt: -------------------------------------------------------------------------------- 1 | 0 4 4:1-16652704 4:1-16010264 2 | 1 4 4:15146932-33170679 4:16010265-32010283 3 | 2 4 4:31215577-55317043 4:32010284-54817017 4 | 3 4 4:54110093-76573188 4:54817018-75359045 5 | 4 4 4:74626803-94712654 4:75359046-93616877 6 | 5 4 4:91302839-113689521 4:93616878-113108704 7 | 6 4 4:112330560-136204776 4:113108705-134871532 8 | 7 4 4:133213166-153960664 4:134871533-153245207 9 | 8 4 4:152745187-171666219 4:153245208-170114904 10 | 9 4 4:169056055-1000000000 4:170114905-1000000000 11 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr4_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr4 chr4:1-16652704 chr4:1-16010264 2 | 1 chr4 chr4:15146932-33170679 chr4:16010265-32010283 3 | 2 chr4 chr4:31215577-55317043 chr4:32010284-54817017 4 | 3 chr4 chr4:54110093-76573188 chr4:54817018-75359045 5 | 4 chr4 chr4:74626803-94712654 chr4:75359046-93616877 6 | 5 chr4 chr4:91302839-113689521 chr4:93616878-113108704 7 | 6 chr4 chr4:112330560-136204776 chr4:113108705-134871532 8 | 7 chr4 chr4:133213166-153960664 chr4:134871533-153245207 9 | 8 chr4 chr4:152745187-171666219 chr4:153245208-170114904 10 | 9 chr4 chr4:169056055-1000000000 chr4:170114905-1000000000 11 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr5.txt: -------------------------------------------------------------------------------- 1 | 0 5 5:1-17339314 5:1-16839293 2 | 1 5 5:16339299-36079398 5:16839294-34891594 3 | 2 5 5:34391597-66616299 5:34891595-65787499 4 | 3 5 5:63315659-88559262 5:65787500-86100146 5 | 4 5 5:84676770-112127251 5:86100147-110906499 6 | 5 5 5:109898888-130184493 5:110906500-128490535 7 | 6 5 5:126856277-150176178 5:128490536-149676178 8 | 7 5 5:149176181-168814319 5:149676179-168314306 9 | 8 5 5:167680729-1000000000 5:168314307-1000000000 10 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr5_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr5 chr5:1-17339314 chr5:1-16839293 2 | 1 chr5 chr5:16339299-36079398 chr5:16839294-34891594 3 | 2 chr5 chr5:34391597-66616299 chr5:34891595-65787499 4 | 3 chr5 chr5:63315659-88559262 chr5:65787500-86100146 5 | 4 chr5 chr5:84676770-112127251 chr5:86100147-110906499 6 | 5 chr5 chr5:109898888-130184493 chr5:110906500-128490535 7 | 6 chr5 chr5:126856277-150176178 chr5:128490536-149676178 8 | 7 chr5 chr5:149176181-168814319 chr5:149676179-168314306 9 | 8 chr5 chr5:167680729-1000000000 chr5:168314307-1000000000 10 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr6.txt: -------------------------------------------------------------------------------- 1 | 0 6 6:1-16563788 6:1-16063776 2 | 1 6 6:15026392-36637138 6:16063777-35491073 3 | 2 6 6:33994446-54559741 6:35491074-53543917 4 | 3 6 6:52940551-85680899 6:53543918-84159921 5 | 4 6 6:82068802-105409691 6:84159922-104072482 6 | 5 6 6:103015175-125049778 6:104072483-124396637 7 | 6 6 6:123843923-147429917 6:124396638-146324141 8 | 7 6 6:144455308-1000000000 6:146324142-1000000000 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr6_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr6 chr6:1-16563788 chr6:1-16063776 2 | 1 chr6 chr6:15026392-36637138 chr6:16063777-35491073 3 | 2 chr6 chr6:33994446-54559741 chr6:35491074-53543917 4 | 3 chr6 chr6:52940551-85680899 chr6:53543918-84159921 5 | 4 chr6 chr6:82068802-105409691 chr6:84159922-104072482 6 | 5 chr6 chr6:103015175-125049778 chr6:104072483-124396637 7 | 6 chr6 chr6:123843923-147429917 chr6:124396638-146324141 8 | 7 chr6 chr6:144455308-1000000000 chr6:146324142-1000000000 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr7.txt: -------------------------------------------------------------------------------- 1 | 0 7 7:1-16697213 7:1-16019430 2 | 1 7 7:15248326-33518094 7:16019431-32237765 3 | 2 7 7:31692303-49814930 7:32237766-48904088 4 | 3 7 7:47709856-77452199 7:48904089-75917072 5 | 4 7 7:75409955-97231466 7:75917073-96167839 6 | 5 7 7:95319852-116588846 7:96167840-115268325 7 | 6 7 7:113421843-138577839 7:115268326-138009002 8 | 7 7 7:137324430-1000000000 7:138009003-1000000000 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr7_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr7 chr7:1-16697213 chr7:1-16019430 2 | 1 chr7 chr7:15248326-33518094 chr7:16019431-32237765 3 | 2 chr7 chr7:31692303-49814930 chr7:32237766-48904088 4 | 3 chr7 chr7:47709856-77452199 chr7:48904089-75917072 5 | 4 chr7 chr7:75409955-97231466 chr7:75917073-96167839 6 | 5 chr7 chr7:95319852-116588846 chr7:96167840-115268325 7 | 6 chr7 chr7:113421843-138577839 chr7:115268326-138009002 8 | 7 chr7 chr7:137324430-1000000000 chr7:138009003-1000000000 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr8.txt: -------------------------------------------------------------------------------- 1 | 0 8 8:1-16731725 8:1-16065036 2 | 1 8 8:15420815-35024690 8:16065037-32369602 3 | 2 8 8:31225555-59370147 8:32369603-58772948 4 | 3 8 8:57939918-81044935 8:58772949-79977713 5 | 4 8 8:78791587-103000003 8:79977714-102314406 6 | 5 8 8:101561358-125261087 8:102314407-124560409 7 | 6 8 8:123853664-1000000000 8:124560410-1000000000 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr8_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr8 chr8:1-16731725 chr8:1-16065036 2 | 1 chr8 chr8:15420815-35024690 chr8:16065037-32369602 3 | 2 chr8 chr8:31225555-59370147 chr8:32369603-58772948 4 | 3 chr8 chr8:57939918-81044935 chr8:58772949-79977713 5 | 4 chr8 chr8:78791587-103000003 chr8:79977714-102314406 6 | 5 chr8 chr8:101561358-125261087 chr8:102314407-124560409 7 | 6 chr8 chr8:123853664-1000000000 chr8:124560410-1000000000 8 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr9.txt: -------------------------------------------------------------------------------- 1 | 0 9 9:1-16510500 9:1-16010498 2 | 1 9 9:15068733-33418458 9:16010499-32674875 3 | 2 9 9:31836957-77518833 9:32674876-76851846 4 | 3 9 9:76318527-95717520 9:76851847-93952682 5 | 4 9 9:93049744-117286194 9:93952683-116518097 6 | 5 9 9:115990035-1000000000 9:116518098-1000000000 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_20cM/chunks_chr9_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr9 chr9:1-16510500 chr9:1-16010498 2 | 1 chr9 chr9:15068733-33418458 chr9:16010499-32674875 3 | 2 chr9 chr9:31836957-77518833 chr9:32674876-76851846 4 | 3 chr9 chr9:76318527-95717520 chr9:76851847-93952682 5 | 4 chr9 chr9:93049744-117286194 chr9:93952683-116518097 6 | 5 chr9 chr9:115990035-1000000000 chr9:116518098-1000000000 7 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr10.txt: -------------------------------------------------------------------------------- 1 | 0 10 10:1-4510477 10:1-4010468 8.50168 4000003 988219 36747 2 | 1 10 10:3510467-8510491 10:4010469-8010489 9.95597 4000020 951335 38596 3 | 2 10 10:7510495-12510496 10:8010490-12010496 7.77278 4000001 931938 33015 4 | 3 10 10:11380732-16637292 10:12010497-16010505 9.68183 4000000 962019 37831 5 | 4 10 10:15435012-20970247 10:16010506-20010512 6.12925 4000000 994050 37509 6 | 5 10 10:19204103-24827223 10:20010513-24327221 4.15694 4316701 1006851 32501 7 | 6 10 10:23399361-28843605 10:24327222-28327225 5.00705 4000000 871788 35167 8 | 7 10 10:26606402-33506537 10:28327226-32327229 6.62518 4000004 893386 35437 9 | 8 10 10:30788681-43302122 10:32327230-36574961 4.16457 4247731 947413 32501 10 | 9 10 10:35760416-46581141 10:36574962-46081140 4 9506177 1841147 63059 11 | 10 10 10:45581145-52069260 10:46081141-51515448 9.05748 5434303 1041351 32501 12 | 11 10 10:50360405-57663231 10:51515449-55515452 5.88578 4000000 909735 35243 13 | 12 10 10:54643594-61794602 10:55515453-60292028 4 4776558 1021938 37294 14 | 13 10 10:59578173-66633520 10:60292029-65788676 4.00005 5496636 1193546 40462 15 | 14 10 10:64502301-70288684 10:65788677-69788679 4.43987 4000003 875698 33859 16 | 15 10 10:69288681-75924707 10:69788680-74162521 5.71688 4373837 935109 32501 17 | 16 10 10:71749908-79542603 10:74162522-79042601 5.37933 4880080 1033937 32501 18 | 17 10 10:78445935-84033061 10:79042602-83164446 5.72485 4121833 907490 32501 19 | 18 10 10:82116327-88214379 10:83164447-87356479 4.00019 4192030 926428 32766 20 | 19 10 10:86178255-93488832 10:87356480-91905640 5.67705 4549129 941390 32501 21 | 20 10 10:91114596-97533724 10:91905641-96654750 4.00011 4749109 992233 34318 22 | 21 10 10:95558620-104050369 10:96654751-101320617 5.3117 4665865 981554 32501 23 | 22 10 10:100820612-108764962 10:101320618-107733873 4 6413249 1389977 43963 24 | 23 10 10:106672158-112850006 10:107733874-112291006 4 4557130 1078343 36938 25 | 24 10 10:111357764-117506449 10:112291007-117006445 6.68605 4715432 1007680 32501 26 | 25 10 10:116197400-121817210 10:117006446-121317209 7.99379 4310759 911816 32501 27 | 26 10 10:120648854-126103375 10:121317210-125337878 9.09769 4020662 873661 32501 28 | 27 10 10:124837875-129837886 10:125337879-129337881 10.7051 4000001 915095 34073 29 | 28 10 10:128837883-1000000000 10:129337882-1000000000 9.5006 4449292 1031189 39398 30 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr10_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr10 chr10:1-4510477 chr10:1-4010468 8.50168 4000003 988219 36747 2 | 1 chr10 chr10:3510467-8510491 chr10:4010469-8010489 9.95597 4000020 951335 38596 3 | 2 chr10 chr10:7510495-12510496 chr10:8010490-12010496 7.77278 4000001 931938 33015 4 | 3 chr10 chr10:11380732-16637292 chr10:12010497-16010505 9.68183 4000000 962019 37831 5 | 4 chr10 chr10:15435012-20970247 chr10:16010506-20010512 6.12925 4000000 994050 37509 6 | 5 chr10 chr10:19204103-24827223 chr10:20010513-24327221 4.15694 4316701 1006851 32501 7 | 6 chr10 chr10:23399361-28843605 chr10:24327222-28327225 5.00705 4000000 871788 35167 8 | 7 chr10 chr10:26606402-33506537 chr10:28327226-32327229 6.62518 4000004 893386 35437 9 | 8 chr10 chr10:30788681-43302122 chr10:32327230-36574961 4.16457 4247731 947413 32501 10 | 9 chr10 chr10:35760416-46581141 chr10:36574962-46081140 4 9506177 1841147 63059 11 | 10 chr10 chr10:45581145-52069260 chr10:46081141-51515448 9.05748 5434303 1041351 32501 12 | 11 chr10 chr10:50360405-57663231 chr10:51515449-55515452 5.88578 4000000 909735 35243 13 | 12 chr10 chr10:54643594-61794602 chr10:55515453-60292028 4 4776558 1021938 37294 14 | 13 chr10 chr10:59578173-66633520 chr10:60292029-65788676 4.00005 5496636 1193546 40462 15 | 14 chr10 chr10:64502301-70288684 chr10:65788677-69788679 4.43987 4000003 875698 33859 16 | 15 chr10 chr10:69288681-75924707 chr10:69788680-74162521 5.71688 4373837 935109 32501 17 | 16 chr10 chr10:71749908-79542603 chr10:74162522-79042601 5.37933 4880080 1033937 32501 18 | 17 chr10 chr10:78445935-84033061 chr10:79042602-83164446 5.72485 4121833 907490 32501 19 | 18 chr10 chr10:82116327-88214379 chr10:83164447-87356479 4.00019 4192030 926428 32766 20 | 19 chr10 chr10:86178255-93488832 chr10:87356480-91905640 5.67705 4549129 941390 32501 21 | 20 chr10 chr10:91114596-97533724 chr10:91905641-96654750 4.00011 4749109 992233 34318 22 | 21 chr10 chr10:95558620-104050369 chr10:96654751-101320617 5.3117 4665865 981554 32501 23 | 22 chr10 chr10:100820612-108764962 chr10:101320618-107733873 4 6413249 1389977 43963 24 | 23 chr10 chr10:106672158-112850006 chr10:107733874-112291006 4 4557130 1078343 36938 25 | 24 chr10 chr10:111357764-117506449 chr10:112291007-117006445 6.68605 4715432 1007680 32501 26 | 25 chr10 chr10:116197400-121817210 chr10:117006446-121317209 7.99379 4310759 911816 32501 27 | 26 chr10 chr10:120648854-126103375 chr10:121317210-125337878 9.09769 4020662 873661 32501 28 | 27 chr10 chr10:124837875-129837886 chr10:125337879-129337881 10.7051 4000001 915095 34073 29 | 28 chr10 chr10:128837883-1000000000 chr10:129337882-1000000000 9.5006 4449292 1031189 39398 30 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr11.txt: -------------------------------------------------------------------------------- 1 | 0 11 11:1-4765723 11:1-4070550 8.73906 4000008 953548 34142 2 | 1 11 11:3487517-8570563 11:4070551-8070562 8.06781 4000003 955831 38048 3 | 2 11 11:7570572-12570581 11:8070563-12070574 6.15462 4000001 895890 32230 4 | 3 11 11:11570581-17521082 11:12070575-16526896 5.35542 4456313 981916 30001 5 | 4 11 11:15284651-21120415 11:16526897-20620407 7.43131 4093508 877371 30001 6 | 5 11 11:20101701-25120424 11:20620408-24620414 6.31538 4000004 937690 36437 7 | 6 11 11:23724048-30773728 11:24620415-29348843 4.00001 4728425 1052782 37918 8 | 7 11 11:27030162-34436864 11:29348844-33936862 4.00032 4588012 1007404 31351 9 | 8 11 11:33370815-40072496 11:33936863-37936866 6.95609 4000000 867990 31625 10 | 9 11 11:36876694-44358764 11:37936867-43858762 4.00012 5921890 1381825 49239 11 | 10 11 11:42288313-58691132 11:43858763-48397235 4.3676 4538470 980809 30001 12 | 11 11 11:45101564-63013771 11:48397236-62039066 4.00001 13641830 2606905 78977 13 | 12 11 11:61048837-69139544 11:62039067-67943104 4 5904036 1360685 39911 14 | 13 11 11:65630395-73242260 11:67943105-71943107 5.30289 4000000 929638 32674 15 | 14 11 11:70955664-78016917 11:71943108-76721448 4.00002 4778337 1010412 32691 16 | 15 11 11:75683038-81531769 11:76721449-80721452 5.48083 4000004 900708 30039 17 | 16 11 11:80195734-87717032 11:80721453-86563432 4 5841979 1351318 44894 18 | 17 11 11:84503400-93028301 11:86563433-92212385 4.00014 5648952 1270909 43811 19 | 18 11 11:90680027-97305989 11:92212386-96561653 5.53841 4349264 929987 30001 20 | 19 11 11:95993058-101688264 11:96561654-100561657 4.12776 4000000 963851 35243 21 | 20 11 11:99744971-106766259 11:100561658-105617479 4 5055817 1106636 37875 22 | 21 11 11:103901737-111258747 11:105617480-110350409 4.00011 4732926 1051941 32344 23 | 22 11 11:109280850-115607573 11:110350410-114680660 5.35181 4330251 923309 30001 24 | 23 11 11:114145414-119535856 11:114680661-118738891 6.85355 4058225 885197 30001 25 | 24 11 11:117877855-123364852 11:118738892-122864850 7.07898 4125946 892440 30001 26 | 25 11 11:122330345-127446755 11:122864851-126864854 7.11562 4000000 869891 32786 27 | 26 11 11:126364857-131364863 11:126864855-130864863 7.7345 4000004 890842 30503 28 | 27 11 11:130364858-1000000000 11:130864864-1000000000 10.2468 4211723 1009222 35248 29 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr11_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr11 chr11:1-4765723 chr11:1-4070550 8.73906 4000008 953548 34142 2 | 1 chr11 chr11:3487517-8570563 chr11:4070551-8070562 8.06781 4000003 955831 38048 3 | 2 chr11 chr11:7570572-12570581 chr11:8070563-12070574 6.15462 4000001 895890 32230 4 | 3 chr11 chr11:11570581-17521082 chr11:12070575-16526896 5.35542 4456313 981916 30001 5 | 4 chr11 chr11:15284651-21120415 chr11:16526897-20620407 7.43131 4093508 877371 30001 6 | 5 chr11 chr11:20101701-25120424 chr11:20620408-24620414 6.31538 4000004 937690 36437 7 | 6 chr11 chr11:23724048-30773728 chr11:24620415-29348843 4.00001 4728425 1052782 37918 8 | 7 chr11 chr11:27030162-34436864 chr11:29348844-33936862 4.00032 4588012 1007404 31351 9 | 8 chr11 chr11:33370815-40072496 chr11:33936863-37936866 6.95609 4000000 867990 31625 10 | 9 chr11 chr11:36876694-44358764 chr11:37936867-43858762 4.00012 5921890 1381825 49239 11 | 10 chr11 chr11:42288313-58691132 chr11:43858763-48397235 4.3676 4538470 980809 30001 12 | 11 chr11 chr11:45101564-63013771 chr11:48397236-62039066 4.00001 13641830 2606905 78977 13 | 12 chr11 chr11:61048837-69139544 chr11:62039067-67943104 4 5904036 1360685 39911 14 | 13 chr11 chr11:65630395-73242260 chr11:67943105-71943107 5.30289 4000000 929638 32674 15 | 14 chr11 chr11:70955664-78016917 chr11:71943108-76721448 4.00002 4778337 1010412 32691 16 | 15 chr11 chr11:75683038-81531769 chr11:76721449-80721452 5.48083 4000004 900708 30039 17 | 16 chr11 chr11:80195734-87717032 chr11:80721453-86563432 4 5841979 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12:43027998-50048345 12:44531219-49081723 4.03048 4550504 977209 32001 11 | 10 12 12:47875940-54204129 12:49081724-53649430 5.02532 4567704 979697 32001 12 | 11 12 12:52649795-59543690 12:53649431-58386411 4.97522 4736980 1044885 32001 13 | 12 12 12:57040269-64702138 12:58386412-63880708 4 5494293 1232192 41754 14 | 13 12 12:62800815-69217690 12:63880709-68620606 6.85653 4739896 980135 32001 15 | 14 12 12:68114819-75183623 12:68620607-72952595 4.83038 4331989 928119 32001 16 | 15 12 12:71941322-78247530 12:72952596-77541141 5.0649 4588544 980508 32001 17 | 16 12 12:76736835-83098798 12:77541142-82366575 4.57484 4825428 1051909 32001 18 | 17 12 12:80637144-90188452 12:82366576-89052977 4 6686398 1493111 45459 19 | 18 12 12:87641267-94308715 12:89052978-93808710 5.66573 4755728 1013096 32001 20 | 19 12 12:93247984-98869228 12:93808711-97810702 6.83302 4001973 838146 32001 21 | 20 12 12:97123994-103163826 12:97810703-102334761 4.83696 4524059 954816 32001 22 | 21 12 12:101470811-107872641 12:102334762-106814220 5.80449 4479457 913333 32001 23 | 22 12 12:105968439-113350011 12:106814221-112592406 4.00021 5778183 1225167 39057 24 | 23 12 12:109648489-117134866 12:112592407-116620164 7.9147 4027754 884989 32001 25 | 24 12 12:115933856-121565997 12:116620165-120761867 7.04526 4141701 882389 32001 26 | 25 12 12:119494094-125441925 12:120761868-124941925 5.18105 4180053 917429 32001 27 | 26 12 12:124428084-129441940 12:124941926-128941939 13.36 4000012 888663 36099 28 | 27 12 12:128441951-1000000000 12:128941940-1000000000 11.7054 4322965 1022720 40438 29 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr12_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr12 chr12:1-4510615 chr12:1-4010613 10.6929 4000004 878177 32776 2 | 1 chr12 chr12:3510608-8511369 chr12:4010614-8011361 9.20134 4000738 883759 32001 3 | 2 chr12 chr12:7511360-12511373 chr12:8011362-12011370 7.00779 4000007 858327 32429 4 | 3 chr12 chr12:11511364-17220000 chr12:12011371-16443583 7.09735 4432213 937263 32001 5 | 4 chr12 chr12:15927502-21571542 chr12:16443584-20689169 4.73515 4245584 973655 32001 6 | 5 chr12 chr12:20189169-25409380 chr12:20689170-24909376 6.24885 4220205 939098 32001 7 | 6 chr12 chr12:24301860-29785732 chr12:24909377-29029169 5.15485 4119781 876762 32001 8 | 7 chr12 chr12:28032261-40128020 chr12:29029170-33029175 4.91683 4000006 875514 36872 9 | 8 chr12 chr12:32080704-46048391 chr12:33029176-44531218 4.00015 11502031 2261536 80577 10 | 9 chr12 chr12:43027998-50048345 chr12:44531219-49081723 4.03048 4550504 977209 32001 11 | 10 chr12 chr12:47875940-54204129 chr12:49081724-53649430 5.02532 4567704 979697 32001 12 | 11 chr12 chr12:52649795-59543690 chr12:53649431-58386411 4.97522 4736980 1044885 32001 13 | 12 chr12 chr12:57040269-64702138 chr12:58386412-63880708 4 5494293 1232192 41754 14 | 13 chr12 chr12:62800815-69217690 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chr12:115933856-121565997 chr12:116620165-120761867 7.04526 4141701 882389 32001 26 | 25 chr12 chr12:119494094-125441925 chr12:120761868-124941925 5.18105 4180053 917429 32001 27 | 26 chr12 chr12:124428084-129441940 chr12:124941926-128941939 13.36 4000012 888663 36099 28 | 27 chr12 chr12:128441951-1000000000 chr12:128941940-1000000000 11.7054 4322965 1022720 40438 29 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr13.txt: -------------------------------------------------------------------------------- 1 | 0 13 13:1-21914564 13:1-21414561 4.03645 5414261 754531 30401 2 | 1 13 13:20906932-26019374 13:21414562-25414567 10.8593 4000005 890028 35993 3 | 2 13 13:24914575-29953338 13:25414568-29414588 7.92926 4000013 869882 33040 4 | 3 13 13:28861703-34144976 13:29414589-33505011 7.5911 4090415 884916 30401 5 | 4 13 13:32978148-38780183 13:33505012-37753575 5.92101 4248561 911085 30401 6 | 5 13 13:36822175-42921586 13:37753576-41792229 5.49691 4038654 851590 30401 7 | 6 13 13:40518477-46627073 13:41792230-46127073 5.78732 4334839 912331 30401 8 | 7 13 13:45627081-51042983 13:46127074-50161797 4.03806 4034715 843197 30401 9 | 8 13 13:48710796-58759706 13:50161798-55863453 4.00003 5701652 1195516 37960 10 | 9 13 13:53614867-63999659 13:55863454-62226222 4.00001 6362769 1405429 44772 11 | 10 13 13:60693134-70437890 13:62226223-68986712 4 6760487 1517525 49559 12 | 11 13 13:67187070-73735090 13:68986713-72986714 4.92853 4000000 912798 31749 13 | 12 13 13:72382121-78495469 13:72986715-76986715 5.91438 4000000 877786 30713 14 | 13 13 13:76209312-83952722 13:76986716-81930367 4.00002 4943649 1059947 35098 15 | 14 13 13:80331836-90710837 13:81930368-89868347 4.00001 7937967 1802408 59620 16 | 15 13 13:87539553-94409671 13:89868348-93909388 4.0001 4041039 910722 31472 17 | 16 13 13:92631386-98574431 13:93909389-98074429 5.15439 4165040 899163 30401 18 | 17 13 13:97310155-102905452 13:98074430-102074437 6.54588 4000006 894157 32345 19 | 18 13 13:101284529-106574478 13:102074438-106074452 8.51615 4000009 906541 33765 20 | 19 13 13:105574454-110574488 13:106074453-110074482 9.45786 4000027 879816 32771 21 | 20 13 13:109552898-1000000000 13:110074483-1000000000 9.54566 4279455 943964 35277 22 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr13_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr13 chr13:1-21914564 chr13:1-21414561 4.03645 5414261 754531 30401 2 | 1 chr13 chr13:20906932-26019374 chr13:21414562-25414567 10.8593 4000005 890028 35993 3 | 2 chr13 chr13:24914575-29953338 chr13:25414568-29414588 7.92926 4000013 869882 33040 4 | 3 chr13 chr13:28861703-34144976 chr13:29414589-33505011 7.5911 4090415 884916 30401 5 | 4 chr13 chr13:32978148-38780183 chr13:33505012-37753575 5.92101 4248561 911085 30401 6 | 5 chr13 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chr13:92631386-98574431 chr13:93909389-98074429 5.15439 4165040 899163 30401 18 | 17 chr13 chr13:97310155-102905452 chr13:98074430-102074437 6.54588 4000006 894157 32345 19 | 18 chr13 chr13:101284529-106574478 chr13:102074438-106074452 8.51615 4000009 906541 33765 20 | 19 chr13 chr13:105574454-110574488 chr13:106074453-110074482 9.45786 4000027 879816 32771 21 | 20 chr13 chr13:109552898-1000000000 chr13:110074483-1000000000 9.54566 4279455 943964 35277 22 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr14.txt: -------------------------------------------------------------------------------- 1 | 0 14 14:1-23328902 14:1-22828899 12.1856 6806047 885451 31401 2 | 1 14 14:22328900-28266281 14:22828900-27021648 7.78177 4192748 941734 31401 3 | 2 14 14:26212134-32369422 14:27021649-31381660 4.87154 4360006 954005 31401 4 | 3 14 14:30417060-36265343 14:31381661-35381663 8.76445 4000003 869520 32050 5 | 4 14 14:34302395-42249577 14:35381664-39923508 4.12117 4541843 979998 31401 6 | 5 14 14:38247023-48536412 14:39923509-46927543 4 7004033 1612988 54723 7 | 6 14 14:44752156-52076057 14:46927544-51576050 4.00005 4648506 1050933 35681 8 | 7 14 14:50876080-56484699 14:51576051-55855563 5.3279 4279506 906898 31401 9 | 8 14 14:54724004-61530389 14:55855564-60239469 4.89443 4383906 937569 31401 10 | 9 14 14:58608061-65887980 14:60239470-64750138 4.00001 4510664 987675 33419 11 | 10 14 14:63219634-70664436 14:64750139-69766729 4 5016590 1062252 35708 12 | 11 14 14:68839882-75233874 14:69766730-73800005 4.72024 4033271 872142 31591 13 | 12 14 14:72604736-78728361 14:73800006-77824415 5.38111 4024408 834737 31401 14 | 13 14 14:76921711-83036133 14:77824416-82069420 4.13188 4245003 902917 31401 15 | 14 14 14:81168875-87727979 14:82069421-86460982 4.00001 4391561 1000025 34297 16 | 15 14 14:85467413-91216786 14:86460983-90516044 5.82343 4055055 889471 31401 17 | 16 14 14:90016060-95016065 14:90516045-94516063 6.36292 4000003 861493 32203 18 | 17 14 14:93955326-99016067 14:94516064-98516063 9.67969 4000000 920391 34423 19 | 18 14 14:97793067-103997670 14:98516064-102610912 8.60403 4094848 929752 31401 20 | 19 14 14:101474925-1000000000 14:102610913-1000000000 7.55701 4272778 1002688 36333 21 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr14_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr14 chr14:1-23328902 chr14:1-22828899 12.1856 6806047 885451 31401 2 | 1 chr14 chr14:22328900-28266281 chr14:22828900-27021648 7.78177 4192748 941734 31401 3 | 2 chr14 chr14:26212134-32369422 chr14:27021649-31381660 4.87154 4360006 954005 31401 4 | 3 chr14 chr14:30417060-36265343 chr14:31381661-35381663 8.76445 4000003 869520 32050 5 | 4 chr14 chr14:34302395-42249577 chr14:35381664-39923508 4.12117 4541843 979998 31401 6 | 5 chr14 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15:42740553-48070572 4.00003 5330020 1152130 34147 7 | 6 15 15:47195585-54215132 15:48070573-53459704 4 5389131 1160051 36869 8 | 7 15 15:52765846-58147255 15:53459705-57516289 4 4056584 968271 34752 9 | 8 15 15:56846237-62443428 15:57516290-61571750 7.68678 4055460 993415 32101 10 | 9 15 15:61013015-66676988 15:61571751-66045340 4.1785 4473590 1003578 32101 11 | 10 15 15:64049998-71489556 15:66045341-70547208 7.72582 4501866 958396 32101 12 | 11 15 15:70047198-78350126 15:70547209-76571357 4.00004 6024147 1254925 37265 13 | 12 15 15:74168217-81323514 15:76571358-80823509 5.12899 4252151 911894 32101 14 | 13 15 15:80323509-86711773 15:80823510-85940268 4.00014 5116755 1050998 34262 15 | 14 15 15:84863702-90733639 15:85940269-89940273 6.96501 4000003 1007489 34087 16 | 15 15 15:89436197-94440292 15:89940274-93940292 10.8374 4000002 932164 35536 17 | 16 15 15:93419580-98440297 15:93940293-97940295 11.7371 4000003 930946 32620 18 | 17 15 15:97440291-1000000000 15:97940296-1000000000 10.8727 4040583 956531 36918 19 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr15_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr15 chr15:1-25716211 chr15:1-25216207 23.0721 8207046 881597 32101 2 | 1 chr15 chr15:24716206-29909378 chr15:25216208-29381689 11.1441 4165480 878383 32101 3 | 2 chr15 chr15:28881688-34684001 chr15:29381690-34044039 9.97924 4662348 885068 32101 4 | 3 chr15 chr15:33544035-38957959 chr15:34044040-38457957 7.39864 4413917 927918 32101 5 | 4 chr15 chr15:37673890-45252828 chr15:38457958-42740552 5.15945 4282595 958359 32101 6 | 5 chr15 chr15:41236832-48960695 chr15:42740553-48070572 4.00003 5330020 1152130 34147 7 | 6 chr15 chr15:47195585-54215132 chr15:48070573-53459704 4 5389131 1160051 36869 8 | 7 chr15 chr15:52765846-58147255 chr15:53459705-57516289 4 4056584 968271 34752 9 | 8 chr15 chr15:56846237-62443428 chr15:57516290-61571750 7.68678 4055460 993415 32101 10 | 9 chr15 chr15:61013015-66676988 chr15:61571751-66045340 4.1785 4473590 1003578 32101 11 | 10 chr15 chr15:64049998-71489556 chr15:66045341-70547208 7.72582 4501866 958396 32101 12 | 11 chr15 chr15:70047198-78350126 chr15:70547209-76571357 4.00004 6024147 1254925 37265 13 | 12 chr15 chr15:74168217-81323514 chr15:76571358-80823509 5.12899 4252151 911894 32101 14 | 13 chr15 chr15:80323509-86711773 chr15:80823510-85940268 4.00014 5116755 1050998 34262 15 | 14 chr15 chr15:84863702-90733639 chr15:85940269-89940273 6.96501 4000003 1007489 34087 16 | 15 chr15 chr15:89436197-94440292 chr15:89940274-93940292 10.8374 4000002 932164 35536 17 | 16 chr15 chr15:93419580-98440297 chr15:93940293-97940295 11.7371 4000003 930946 32620 18 | 17 chr15 chr15:97440291-1000000000 chr15:97940296-1000000000 10.8727 4040583 956531 36918 19 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr16.txt: -------------------------------------------------------------------------------- 1 | 0 16 16:1-4639387 16:1-4010037 7.90543 4000001 1130340 36205 2 | 1 16 16:3331542-8510041 16:4010038-8010040 11.2713 4000003 1392941 49143 3 | 2 16 16:7510040-12655467 16:8010041-12010047 9.08199 4000006 1152209 42316 4 | 3 16 16:11510053-16606071 16:12010048-16010061 5.89576 4000005 1021065 33250 5 | 4 16 16:15510075-22432523 16:16010062-20875457 7.95131 4865381 923843 33201 6 | 5 16 16:20139146-26156836 16:20875458-25656836 7.72945 4781371 990670 33201 7 | 6 16 16:24900714-48433300 16:25656837-30603364 7.96812 4946528 1004909 33201 8 | 7 16 16:29022179-51318557 16:30603365-50818556 4 20215192 2162494 51239 9 | 8 16 16:49928866-55698367 16:50818557-55190827 9.37043 4372264 991001 33201 10 | 9 16 16:54690831-60325574 16:55190828-59245364 7.48357 4054531 871580 33201 11 | 10 16 16:58490313-64868090 16:59245365-63771025 4.34453 4525653 999235 33201 12 | 11 16 16:62609725-71006718 16:63771026-69401446 4.00014 5630421 1236940 37681 13 | 12 16 16:66312265-74824577 16:69401447-73993352 4.49532 4591901 1085794 33201 14 | 13 16 16:73493354-78554460 16:73993353-77993354 5.71684 4000000 1116743 36880 15 | 14 16 16:77493354-82506529 16:77993355-81993358 11.7066 4000001 1361229 47906 16 | 15 16 16:81493359-86493369 16:81993359-85993369 14.9405 4000010 1289925 47302 17 | 16 16 16:85493365-1000000000 16:85993370-1000000000 10.3711 4234915 1240159 42460 18 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr16_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr16 chr16:1-4639387 chr16:1-4010037 7.90543 4000001 1130340 36205 2 | 1 chr16 chr16:3331542-8510041 chr16:4010038-8010040 11.2713 4000003 1392941 49143 3 | 2 chr16 chr16:7510040-12655467 chr16:8010041-12010047 9.08199 4000006 1152209 42316 4 | 3 chr16 chr16:11510053-16606071 chr16:12010048-16010061 5.89576 4000005 1021065 33250 5 | 4 chr16 chr16:15510075-22432523 chr16:16010062-20875457 7.95131 4865381 923843 33201 6 | 5 chr16 chr16:20139146-26156836 chr16:20875458-25656836 7.72945 4781371 990670 33201 7 | 6 chr16 chr16:24900714-48433300 chr16:25656837-30603364 7.96812 4946528 1004909 33201 8 | 7 chr16 chr16:29022179-51318557 chr16:30603365-50818556 4 20215192 2162494 51239 9 | 8 chr16 chr16:49928866-55698367 chr16:50818557-55190827 9.37043 4372264 991001 33201 10 | 9 chr16 chr16:54690831-60325574 chr16:55190828-59245364 7.48357 4054531 871580 33201 11 | 10 chr16 chr16:58490313-64868090 chr16:59245365-63771025 4.34453 4525653 999235 33201 12 | 11 chr16 chr16:62609725-71006718 chr16:63771026-69401446 4.00014 5630421 1236940 37681 13 | 12 chr16 chr16:66312265-74824577 chr16:69401447-73993352 4.49532 4591901 1085794 33201 14 | 13 chr16 chr16:73493354-78554460 chr16:73993353-77993354 5.71684 4000000 1116743 36880 15 | 14 chr16 chr16:77493354-82506529 chr16:77993355-81993358 11.7066 4000001 1361229 47906 16 | 15 chr16 chr16:81493359-86493369 chr16:81993359-85993369 14.9405 4000010 1289925 47302 17 | 16 chr16 chr16:85493365-1000000000 chr16:85993370-1000000000 10.3711 4234915 1240159 42460 18 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr17.txt: -------------------------------------------------------------------------------- 1 | 0 17 17:1-4613643 17:1-4113642 10.6464 4000008 935080 35930 2 | 1 17 17:3613639-8849809 17:4113643-8113647 9.16203 4000004 925542 35548 3 | 2 17 17:7613647-12613658 17:8113648-12113655 10.6734 4000008 891887 33408 4 | 3 17 17:11549625-16983740 17:12113656-16113662 10.9353 4000001 905328 36763 5 | 4 17 17:15376211-27217315 17:16113663-21107526 4.12542 4993855 1038073 32401 6 | 5 17 17:19011356-32998732 17:21107527-32247334 4 11139801 1607475 47107 7 | 6 17 17:31457572-37650685 17:32247335-36848599 9.16124 4601263 964586 32401 8 | 7 17 17:36348306-42931046 17:36848600-41636715 5.57105 4788115 968926 32401 9 | 8 17 17:40578292-49136644 17:41636716-47795553 4 6158837 1236770 39683 10 | 9 17 17:45802722-54471527 17:47795554-52497701 5.87943 4702143 999853 32401 11 | 10 17 17:51462909-57467098 17:52497702-56967089 5.20833 4469387 966651 32401 12 | 11 17 17:56467101-63501461 17:56967090-61993266 5.91275 5026163 1042764 32401 13 | 12 17 17:61341850-67110615 17:61993267-66610613 5.10159 4617344 985427 32401 14 | 13 17 17:65572573-71540440 17:66610614-70897171 6.90818 4286556 926703 32401 15 | 14 17 17:70148304-75752183 17:70897172-74897173 10.8478 4000002 914840 33615 16 | 15 17 17:74386836-79397180 17:74897174-78897177 9.2443 4000000 961722 36706 17 | 16 17 17:78397178-1000000000 17:78897178-1000000000 11.3578 4348049 1077482 39746 18 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr17_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr17 chr17:1-4613643 chr17:1-4113642 10.6464 4000008 935080 35930 2 | 1 chr17 chr17:3613639-8849809 chr17:4113643-8113647 9.16203 4000004 925542 35548 3 | 2 chr17 chr17:7613647-12613658 chr17:8113648-12113655 10.6734 4000008 891887 33408 4 | 3 chr17 chr17:11549625-16983740 chr17:12113656-16113662 10.9353 4000001 905328 36763 5 | 4 chr17 chr17:15376211-27217315 chr17:16113663-21107526 4.12542 4993855 1038073 32401 6 | 5 chr17 chr17:19011356-32998732 chr17:21107527-32247334 4 11139801 1607475 47107 7 | 6 chr17 chr17:31457572-37650685 chr17:32247335-36848599 9.16124 4601263 964586 32401 8 | 7 chr17 chr17:36348306-42931046 chr17:36848600-41636715 5.57105 4788115 968926 32401 9 | 8 chr17 chr17:40578292-49136644 chr17:41636716-47795553 4 6158837 1236770 39683 10 | 9 chr17 chr17:45802722-54471527 chr17:47795554-52497701 5.87943 4702143 999853 32401 11 | 10 chr17 chr17:51462909-57467098 chr17:52497702-56967089 5.20833 4469387 966651 32401 12 | 11 chr17 chr17:56467101-63501461 chr17:56967090-61993266 5.91275 5026163 1042764 32401 13 | 12 chr17 chr17:61341850-67110615 chr17:61993267-66610613 5.10159 4617344 985427 32401 14 | 13 chr17 chr17:65572573-71540440 chr17:66610614-70897171 6.90818 4286556 926703 32401 15 | 14 chr17 chr17:70148304-75752183 chr17:70897172-74897173 10.8478 4000002 914840 33615 16 | 15 chr17 chr17:74386836-79397180 chr17:74897174-78897177 9.2443 4000000 961722 36706 17 | 16 chr17 chr17:78397178-1000000000 chr17:78897178-1000000000 11.3578 4348049 1077482 39746 18 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr18.txt: -------------------------------------------------------------------------------- 1 | 0 18 18:1-4594604 18:1-4094603 12.0975 4083875 882284 35901 2 | 1 18 18:3594595-8938807 18:4094604-8438807 13.0367 4344204 953152 35901 3 | 2 18 18:7938807-13424229 18:8438808-12527170 11.5726 4088362 929375 35901 4 | 3 18 18:11880796-24210253 18:12527171-22583755 4.6881 10056576 1125450 35901 5 | 4 18 18:22027852-29034588 18:22583756-27635813 5.89286 5052057 1065603 35901 6 | 5 18 18:26824451-34417676 18:27635814-32624266 4.65811 4988449 1090258 35901 7 | 6 18 18:31668271-40104141 18:32624267-38176914 4.02297 5552647 1183247 35901 8 | 7 18 18:36642570-45389976 18:38176915-44320428 4 6143513 1384321 43319 9 | 8 18 18:42357574-50440401 18:44320429-49308599 7.18073 4988166 1097531 35901 10 | 9 18 18:48776089-56096855 18:49308600-53735512 4.63367 4426909 1012407 35901 11 | 10 18 18:52422425-59171666 18:53735513-58544205 5.16561 4808692 1043633 35901 12 | 11 18 18:58044208-63521229 18:58544206-63021222 6.72226 4477013 984952 35901 13 | 12 18 18:61793688-68028111 18:63021223-67387992 5.97078 4366765 993379 35901 14 | 13 18 18:66287243-72174833 18:67387993-71615394 7.12398 4227402 927392 35901 15 | 14 18 18:70808804-76301223 18:71615395-75801221 9.97211 4185824 954680 35901 16 | 15 18 18:75221946-1000000000 18:75801222-1000000000 10.9789 4461539 1036555 40417 17 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr18_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr18 chr18:1-4594604 chr18:1-4094603 12.0975 4083875 882284 35901 2 | 1 chr18 chr18:3594595-8938807 chr18:4094604-8438807 13.0367 4344204 953152 35901 3 | 2 chr18 chr18:7938807-13424229 chr18:8438808-12527170 11.5726 4088362 929375 35901 4 | 3 chr18 chr18:11880796-24210253 chr18:12527171-22583755 4.6881 10056576 1125450 35901 5 | 4 chr18 chr18:22027852-29034588 chr18:22583756-27635813 5.89286 5052057 1065603 35901 6 | 5 chr18 chr18:26824451-34417676 chr18:27635814-32624266 4.65811 4988449 1090258 35901 7 | 6 chr18 chr18:31668271-40104141 chr18:32624267-38176914 4.02297 5552647 1183247 35901 8 | 7 chr18 chr18:36642570-45389976 chr18:38176915-44320428 4 6143513 1384321 43319 9 | 8 chr18 chr18:42357574-50440401 chr18:44320429-49308599 7.18073 4988166 1097531 35901 10 | 9 chr18 chr18:48776089-56096855 chr18:49308600-53735512 4.63367 4426909 1012407 35901 11 | 10 chr18 chr18:52422425-59171666 chr18:53735513-58544205 5.16561 4808692 1043633 35901 12 | 11 chr18 chr18:58044208-63521229 chr18:58544206-63021222 6.72226 4477013 984952 35901 13 | 12 chr18 chr18:61793688-68028111 chr18:63021223-67387992 5.97078 4366765 993379 35901 14 | 13 chr18 chr18:66287243-72174833 chr18:67387993-71615394 7.12398 4227402 927392 35901 15 | 14 chr18 chr18:70808804-76301223 chr18:71615395-75801221 9.97211 4185824 954680 35901 16 | 15 chr18 chr18:75221946-1000000000 chr18:75801222-1000000000 10.9789 4461539 1036555 40417 17 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr19.txt: -------------------------------------------------------------------------------- 1 | 0 19 19:1-4560805 19:1-4060799 14.0518 4000002 1039250 37572 2 | 1 19 19:3560806-8600002 19:4060800-8060816 11.7925 4000008 964978 39435 3 | 2 19 19:7560805-13182867 19:8060817-12060825 6.87878 4000000 907816 34654 4 | 3 19 19:11324952-16560845 19:12060826-16060838 7.02075 4000004 914399 34599 5 | 4 19 19:15224212-20748629 19:16060839-20060841 6.94999 4000002 934772 33232 6 | 5 19 19:18935981-29905984 19:20060842-29328545 4 9267704 1646647 61741 7 | 6 19 19:28292011-33949770 19:29328546-33449757 6.21988 4121212 958671 33101 8 | 7 19 19:32908063-38949246 19:33449758-37780538 5.7295 4330780 933022 33101 9 | 8 19 19:35797333-43451561 19:37780539-41942739 5.1509 4162201 943509 33101 10 | 9 19 19:41166077-46643405 19:41942740-46143402 5.74402 4200662 988606 33101 11 | 10 19 19:45372143-50643413 19:46143403-50143407 7.95451 4000003 923128 34966 12 | 11 19 19:49435109-54643417 19:50143408-54143414 14.9202 4000006 930942 41741 13 | 12 19 19:53643423-1000000000 19:54143415-1000000000 11.3609 4463986 1095968 43481 14 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr19_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr19 chr19:1-4560805 chr19:1-4060799 14.0518 4000002 1039250 37572 2 | 1 chr19 chr19:3560806-8600002 chr19:4060800-8060816 11.7925 4000008 964978 39435 3 | 2 chr19 chr19:7560805-13182867 chr19:8060817-12060825 6.87878 4000000 907816 34654 4 | 3 chr19 chr19:11324952-16560845 chr19:12060826-16060838 7.02075 4000004 914399 34599 5 | 4 chr19 chr19:15224212-20748629 chr19:16060839-20060841 6.94999 4000002 934772 33232 6 | 5 chr19 chr19:18935981-29905984 chr19:20060842-29328545 4 9267704 1646647 61741 7 | 6 chr19 chr19:28292011-33949770 chr19:29328546-33449757 6.21988 4121212 958671 33101 8 | 7 chr19 chr19:32908063-38949246 chr19:33449758-37780538 5.7295 4330780 933022 33101 9 | 8 chr19 chr19:35797333-43451561 chr19:37780539-41942739 5.1509 4162201 943509 33101 10 | 9 chr19 chr19:41166077-46643405 chr19:41942740-46143402 5.74402 4200662 988606 33101 11 | 10 chr19 chr19:45372143-50643413 chr19:46143403-50143407 7.95451 4000003 923128 34966 12 | 11 chr19 chr19:49435109-54643417 chr19:50143408-54143414 14.9202 4000006 930942 41741 13 | 12 chr19 chr19:53643423-1000000000 chr19:54143415-1000000000 11.3609 4463986 1095968 43481 14 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr20.txt: -------------------------------------------------------------------------------- 1 | 0 20 20:1-4560061 20:1-4060061 11.3959 4000000 865268 33513 2 | 1 20 20:3560065-8637340 20:4060062-8060066 12.0677 4000000 880900 34974 3 | 2 20 20:7386098-13015492 20:8060067-12515478 8.53303 4455411 961593 33501 4 | 3 20 20:11959267-17507629 20:12515479-16768980 7.58016 4253500 917469 33501 5 | 4 20 20:16217843-22690836 20:16768981-21050967 7.47024 4281978 931012 33501 6 | 5 20 20:20279660-33113141 20:21050968-31549151 4 10498183 1919135 56282 7 | 6 20 20:24467113-39068578 20:31549152-38282818 4.0001 6733666 1436550 42356 8 | 7 20 20:37576387-43756999 20:38282819-43181961 6.45728 4899135 1056145 33501 9 | 8 20 20:42681957-48119487 20:43181962-47619487 7.22219 4437523 955972 33501 10 | 9 20 20:46982183-52289205 20:47619488-51789196 7.52731 4169706 923179 33501 11 | 10 20 20:51289196-56403844 20:51789197-55789200 8.49226 4000001 911453 34268 12 | 11 20 20:55289213-60388071 20:55789201-59874964 11.6882 4085751 925444 33501 13 | 12 20 20:59374958-1000000000 20:59874965-1000000000 11.8593 4459162 1096090 39114 14 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr20_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr20 chr20:1-4560061 chr20:1-4060061 11.3959 4000000 865268 33513 2 | 1 chr20 chr20:3560065-8637340 chr20:4060062-8060066 12.0677 4000000 880900 34974 3 | 2 chr20 chr20:7386098-13015492 chr20:8060067-12515478 8.53303 4455411 961593 33501 4 | 3 chr20 chr20:11959267-17507629 chr20:12515479-16768980 7.58016 4253500 917469 33501 5 | 4 chr20 chr20:16217843-22690836 chr20:16768981-21050967 7.47024 4281978 931012 33501 6 | 5 chr20 chr20:20279660-33113141 chr20:21050968-31549151 4 10498183 1919135 56282 7 | 6 chr20 chr20:24467113-39068578 chr20:31549152-38282818 4.0001 6733666 1436550 42356 8 | 7 chr20 chr20:37576387-43756999 chr20:38282819-43181961 6.45728 4899135 1056145 33501 9 | 8 chr20 chr20:42681957-48119487 chr20:43181962-47619487 7.22219 4437523 955972 33501 10 | 9 chr20 chr20:46982183-52289205 chr20:47619488-51789196 7.52731 4169706 923179 33501 11 | 10 chr20 chr20:51289196-56403844 chr20:51789197-55789200 8.49226 4000001 911453 34268 12 | 11 chr20 chr20:55289213-60388071 chr20:55789201-59874964 11.6882 4085751 925444 33501 13 | 12 chr20 chr20:59374958-1000000000 chr20:59874965-1000000000 11.8593 4459162 1096090 39114 14 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr21.txt: -------------------------------------------------------------------------------- 1 | 0 21 21:1-16321186 21:1-15821182 5.48249 10790907 1105611 35601 2 | 1 21 21:15271941-20477605 21:15821183-19977601 10.2474 4156409 962987 35601 3 | 2 21 21:19330067-24655837 21:19977602-24005389 6.73095 4027785 977276 35601 4 | 3 21 21:23435004-29824039 21:24005390-28173036 6.88786 4167638 952477 35601 5 | 4 21 21:27673027-33378313 21:28173037-32878310 5.27543 4705274 1009548 35601 6 | 5 21 21:32050565-38067903 21:32878311-37567899 7.64299 4689589 986441 35601 7 | 6 21 21:36721380-42270194 21:37567900-41770193 11.0153 4202290 920820 35601 8 | 7 21 21:41270196-1000000000 21:41770194-1000000000 9.53744 4929631 1034201 38833 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr21_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr21 chr21:1-16321186 chr21:1-15821182 5.48249 10790907 1105611 35601 2 | 1 chr21 chr21:15271941-20477605 chr21:15821183-19977601 10.2474 4156409 962987 35601 3 | 2 chr21 chr21:19330067-24655837 chr21:19977602-24005389 6.73095 4027785 977276 35601 4 | 3 chr21 chr21:23435004-29824039 chr21:24005390-28173036 6.88786 4167638 952477 35601 5 | 4 chr21 chr21:27673027-33378313 chr21:28173037-32878310 5.27543 4705274 1009548 35601 6 | 5 chr21 chr21:32050565-38067903 chr21:32878311-37567899 7.64299 4689589 986441 35601 7 | 6 chr21 chr21:36721380-42270194 chr21:37567900-41770193 11.0153 4202290 920820 35601 8 | 7 chr21 chr21:41270196-1000000000 chr21:41770194-1000000000 9.53744 4929631 1034201 38833 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr22.txt: -------------------------------------------------------------------------------- 1 | 0 22 22:1-20119180 22:1-19619180 9.82242 9104113 1093568 35701 2 | 1 22 22:18884726-24888278 22:19619181-23914380 12.2714 4295199 922788 35701 3 | 2 22 22:23414379-30271952 22:23914381-28090429 11.305 4176048 918444 35701 4 | 3 22 22:27590423-33613738 22:28090430-33113736 4.00029 5023306 1096304 38020 5 | 4 22 22:32523221-37677557 22:33113737-37177553 8.19162 4063815 941145 35701 6 | 5 22 22:36677559-43215583 22:37177554-42325255 4.94875 5147696 1176825 35701 7 | 6 22 22:39664334-46825259 22:42325256-46325257 9.74558 4000002 969688 36597 8 | 7 22 22:45825244-1000000000 22:46325258-1000000000 13.8582 4482600 1137092 44702 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr22_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr22 chr22:1-20119180 chr22:1-19619180 9.82242 9104113 1093568 35701 2 | 1 chr22 chr22:18884726-24888278 chr22:19619181-23914380 12.2714 4295199 922788 35701 3 | 2 chr22 chr22:23414379-30271952 chr22:23914381-28090429 11.305 4176048 918444 35701 4 | 3 chr22 chr22:27590423-33613738 chr22:28090430-33113736 4.00029 5023306 1096304 38020 5 | 4 chr22 chr22:32523221-37677557 chr22:33113737-37177553 8.19162 4063815 941145 35701 6 | 5 chr22 chr22:36677559-43215583 chr22:37177554-42325255 4.94875 5147696 1176825 35701 7 | 6 chr22 chr22:39664334-46825259 chr22:42325256-46325257 9.74558 4000002 969688 36597 8 | 7 chr22 chr22:45825244-1000000000 chr22:46325258-1000000000 13.8582 4482600 1137092 44702 9 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr5.txt: 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-------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr7.txt: -------------------------------------------------------------------------------- 1 | 0 7 7:1-4519211 7:1-4019198 6.48672 4000002 1170984 42344 2 | 1 7 7:3045769-8519207 7:4019199-8019201 8.44814 4000000 1105185 42031 3 | 2 7 7:7519204-12747272 7:8019202-12019422 7.48989 4000216 1048010 38667 4 | 3 7 7:11475177-16697213 7:12019423-16019430 6.8841 4000006 1049150 39131 5 | 4 7 7:15248326-20599172 7:16019431-20019432 6.14183 4000001 1003289 32738 6 | 5 7 7:19103435-24861349 7:20019433-24019438 5.98014 4000004 947348 32288 7 | 6 7 7:22750270-28634114 7:24019439-28134113 4.95272 4114657 911983 31001 8 | 7 7 7:27104516-33518094 7:28134114-32237765 7.54159 4103644 888296 31001 9 | 8 7 7:31692303-36954421 7:32237766-36454416 4.18169 4216650 892636 31001 10 | 9 7 7:35350132-41043221 7:36454417-40543220 5.32528 4088799 869446 31001 11 | 10 7 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-------------------------------------------------------------------------------- 1 | 0 chr7 chr7:1-4519211 chr7:1-4019198 6.48672 4000002 1170984 42344 2 | 1 chr7 chr7:3045769-8519207 chr7:4019199-8019201 8.44814 4000000 1105185 42031 3 | 2 chr7 chr7:7519204-12747272 chr7:8019202-12019422 7.48989 4000216 1048010 38667 4 | 3 chr7 chr7:11475177-16697213 chr7:12019423-16019430 6.8841 4000006 1049150 39131 5 | 4 chr7 chr7:15248326-20599172 chr7:16019431-20019432 6.14183 4000001 1003289 32738 6 | 5 chr7 chr7:19103435-24861349 chr7:20019433-24019438 5.98014 4000004 947348 32288 7 | 6 chr7 chr7:22750270-28634114 chr7:24019439-28134113 4.95272 4114657 911983 31001 8 | 7 chr7 chr7:27104516-33518094 chr7:28134114-32237765 7.54159 4103644 888296 31001 9 | 8 chr7 chr7:31692303-36954421 chr7:32237766-36454416 4.18169 4216650 892636 31001 10 | 9 chr7 chr7:35350132-41043221 chr7:36454417-40543220 5.32528 4088799 869446 31001 11 | 10 chr7 chr7:38923122-45655151 chr7:40543221-44898748 5.38178 4355512 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-------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr8.txt: -------------------------------------------------------------------------------- 1 | 0 8 8:1-4561617 8:1-4061616 9.53923 4000000 1381200 50244 2 | 1 8 8:3561620-8880024 8:4061617-8062436 9.31039 4000816 1377725 48404 3 | 2 8 8:6883321-12565020 8:8062437-12065019 6.02377 4002490 1224091 38612 4 | 3 8 8:11565031-16731725 8:12065020-16065036 8.66802 4000003 1228608 45757 5 | 4 8 8:15420815-20565052 8:16065037-20065044 8.37455 4000000 1153314 42399 6 | 5 8 8:19324507-25062761 8:20065045-24065056 7.62343 4000010 1008392 34990 7 | 6 8 8:23295996-28565070 8:24065057-28065068 5.42368 4000009 887017 32474 8 | 7 8 8:27433603-35024690 8:28065069-32369602 6.05233 4304527 917596 31101 9 | 8 8 8:31225555-39552375 8:32369603-38514671 4.00002 6145066 1354968 40337 10 | 9 8 8:37721529-51340697 8:38514672-42821314 4.41685 4306642 912988 31101 11 | 10 8 8:41577469-55683275 8:42821315-54419646 4 11598329 2412929 70080 12 | 11 8 8:53394275-59370147 8:54419647-58772948 4 4353301 982946 33802 13 | 12 8 8:57939918-65474712 8:58772949-63785181 4 5012225 1123837 35153 14 | 13 8 8:61730431-69561082 8:63785182-69061070 4.00001 5275886 1139672 35151 15 | 14 8 8:68210195-74568544 8:69061071-73389625 7.08238 4328547 915860 31101 16 | 15 8 8:72889622-81044935 8:73389626-79977713 4 6588082 1439600 48103 17 | 16 8 8:78791587-88842564 8:79977714-86769767 4 6792051 1478098 49365 18 | 17 8 8:84185776-94632170 8:86769768-93372644 4.00001 6602875 1500859 45999 19 | 18 8 8:92539240-98235204 8:93372645-97735200 4.91692 4362555 899071 31101 20 | 19 8 8:96529040-103000003 8:97735201-102314406 6.17313 4579206 971860 31101 21 | 20 8 8:101561358-108740727 8:102314407-107380784 4.00026 5066376 1088079 36417 22 | 21 8 8:105694339-116934486 8:107380785-116120732 4.00011 8739947 1903880 59006 23 | 22 8 8:114701486-121271994 8:116120733-120404138 4.18686 4283392 910932 31101 24 | 23 8 8:118690416-125261087 8:120404139-124560409 6.67828 4156267 898963 31101 25 | 24 8 8:123853664-129472492 8:124560410-128560424 8.23386 4000005 895567 32965 26 | 25 8 8:128038872-133321658 8:128560425-132695832 5.1702 4135403 930430 31101 27 | 26 8 8:132137055-137789412 8:132695833-136695860 6.04037 4000004 921711 32327 28 | 27 8 8:135678363-141417547 8:136695861-140695874 7.70705 4000011 927888 32277 29 | 28 8 8:140094817-1000000000 8:140695875-1000000000 6.38107 4380112 1076758 35432 30 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr8_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr8 chr8:1-4561617 chr8:1-4061616 9.53923 4000000 1381200 50244 2 | 1 chr8 chr8:3561620-8880024 chr8:4061617-8062436 9.31039 4000816 1377725 48404 3 | 2 chr8 chr8:6883321-12565020 chr8:8062437-12065019 6.02377 4002490 1224091 38612 4 | 3 chr8 chr8:11565031-16731725 chr8:12065020-16065036 8.66802 4000003 1228608 45757 5 | 4 chr8 chr8:15420815-20565052 chr8:16065037-20065044 8.37455 4000000 1153314 42399 6 | 5 chr8 chr8:19324507-25062761 chr8:20065045-24065056 7.62343 4000010 1008392 34990 7 | 6 chr8 chr8:23295996-28565070 chr8:24065057-28065068 5.42368 4000009 887017 32474 8 | 7 chr8 chr8:27433603-35024690 chr8:28065069-32369602 6.05233 4304527 917596 31101 9 | 8 chr8 chr8:31225555-39552375 chr8:32369603-38514671 4.00002 6145066 1354968 40337 10 | 9 chr8 chr8:37721529-51340697 chr8:38514672-42821314 4.41685 4306642 912988 31101 11 | 10 chr8 chr8:41577469-55683275 chr8:42821315-54419646 4 11598329 2412929 70080 12 | 11 chr8 chr8:53394275-59370147 chr8:54419647-58772948 4 4353301 982946 33802 13 | 12 chr8 chr8:57939918-65474712 chr8:58772949-63785181 4 5012225 1123837 35153 14 | 13 chr8 chr8:61730431-69561082 chr8:63785182-69061070 4.00001 5275886 1139672 35151 15 | 14 chr8 chr8:68210195-74568544 chr8:69061071-73389625 7.08238 4328547 915860 31101 16 | 15 chr8 chr8:72889622-81044935 chr8:73389626-79977713 4 6588082 1439600 48103 17 | 16 chr8 chr8:78791587-88842564 chr8:79977714-86769767 4 6792051 1478098 49365 18 | 17 chr8 chr8:84185776-94632170 chr8:86769768-93372644 4.00001 6602875 1500859 45999 19 | 18 chr8 chr8:92539240-98235204 chr8:93372645-97735200 4.91692 4362555 899071 31101 20 | 19 chr8 chr8:96529040-103000003 chr8:97735201-102314406 6.17313 4579206 971860 31101 21 | 20 chr8 chr8:101561358-108740727 chr8:102314407-107380784 4.00026 5066376 1088079 36417 22 | 21 chr8 chr8:105694339-116934486 chr8:107380785-116120732 4.00011 8739947 1903880 59006 23 | 22 chr8 chr8:114701486-121271994 chr8:116120733-120404138 4.18686 4283392 910932 31101 24 | 23 chr8 chr8:118690416-125261087 chr8:120404139-124560409 6.67828 4156267 898963 31101 25 | 24 chr8 chr8:123853664-129472492 chr8:124560410-128560424 8.23386 4000005 895567 32965 26 | 25 chr8 chr8:128038872-133321658 chr8:128560425-132695832 5.1702 4135403 930430 31101 27 | 26 chr8 chr8:132137055-137789412 chr8:132695833-136695860 6.04037 4000004 921711 32327 28 | 27 chr8 chr8:135678363-141417547 chr8:136695861-140695874 7.70705 4000011 927888 32277 29 | 28 chr8 chr8:140094817-1000000000 chr8:140695875-1000000000 6.38107 4380112 1076758 35432 30 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr9.txt: -------------------------------------------------------------------------------- 1 | 0 9 9:1-4510483 9:1-4010477 10.8373 4000003 1178546 41089 2 | 1 9 9:3510482-8510488 9:4010478-8010487 7.9138 4000004 1157092 35515 3 | 2 9 9:7510487-12782795 9:8010488-12010492 6.84127 4000005 1216950 40991 4 | 3 9 9:10676180-16510500 9:12010493-16010498 8.11399 4000004 1119027 35216 5 | 4 9 9:15068733-20510508 9:16010499-20010502 6.84753 4000003 1099135 36534 6 | 5 9 9:19459871-25004507 9:20010503-24177590 5.95531 4167077 1127030 33401 7 | 6 9 9:23556276-28757838 9:24177591-28180476 6.75843 4002883 1020223 33401 8 | 7 9 9:27636617-33418458 9:28180477-32674875 4.00003 4494396 1022674 38780 9 | 8 9 9:31836957-38208964 9:32674876-37357969 4.06541 4683093 995887 33401 10 | 9 9 9:36726469-68277559 9:37357970-65377059 4.00001 28019090 1380212 34732 11 | 10 9 9:63764407-74126325 9:65377060-72291854 4.94739 6914793 1042872 33401 12 | 11 9 9:71624392-77518833 9:72291855-76851846 6.38981 4559984 984641 33401 13 | 12 9 9:76318527-81635697 9:76851847-80993198 5.55792 4141352 950098 33401 14 | 13 9 9:79934614-86583426 9:80993199-85503669 6.53557 4510453 959938 33401 15 | 14 9 9:85003669-90198805 9:85503670-89698805 5.76067 4195136 921120 33401 16 | 15 9 9:88782764-95717520 9:89698806-93952682 4.83563 4253875 926594 33401 17 | 16 9 9:93049744-100406254 9:93952683-98833139 4.00013 4880447 1037906 35261 18 | 17 9 9:98316139-104822677 9:98833140-103729527 4.00002 4896377 1084715 37434 19 | 18 9 9:102477675-108608207 9:103729528-107961151 6.29074 4231623 921950 33401 20 | 19 9 9:107461155-112914404 9:107961152-111988765 5.4151 4027609 885906 33401 21 | 20 9 9:110884256-117286194 9:111988766-116518097 7.63663 4529331 952109 33401 22 | 21 9 9:115990035-122160797 9:116518098-121316841 5.89725 4798735 1044664 33401 23 | 22 9 9:119914962-126564044 9:121316842-126048763 4.8212 4731921 1029577 33401 24 | 23 9 9:124210468-130777088 9:126048764-130277088 6.49924 4228323 950002 33401 25 | 24 9 9:129740930-134777095 9:130277089-134277093 11.1092 4000002 935682 34476 26 | 25 9 9:133777091-1000000000 9:134277094-1000000000 11.4483 4041406 999618 34009 27 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_b38_4cM/chunks_chr9_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr9 chr9:1-4510483 chr9:1-4010477 10.8373 4000003 1178546 41089 2 | 1 chr9 chr9:3510482-8510488 chr9:4010478-8010487 7.9138 4000004 1157092 35515 3 | 2 chr9 chr9:7510487-12782795 chr9:8010488-12010492 6.84127 4000005 1216950 40991 4 | 3 chr9 chr9:10676180-16510500 chr9:12010493-16010498 8.11399 4000004 1119027 35216 5 | 4 chr9 chr9:15068733-20510508 chr9:16010499-20010502 6.84753 4000003 1099135 36534 6 | 5 chr9 chr9:19459871-25004507 chr9:20010503-24177590 5.95531 4167077 1127030 33401 7 | 6 chr9 chr9:23556276-28757838 chr9:24177591-28180476 6.75843 4002883 1020223 33401 8 | 7 chr9 chr9:27636617-33418458 chr9:28180477-32674875 4.00003 4494396 1022674 38780 9 | 8 chr9 chr9:31836957-38208964 chr9:32674876-37357969 4.06541 4683093 995887 33401 10 | 9 chr9 chr9:36726469-68277559 chr9:37357970-65377059 4.00001 28019090 1380212 34732 11 | 10 chr9 chr9:63764407-74126325 chr9:65377060-72291854 4.94739 6914793 1042872 33401 12 | 11 chr9 chr9:71624392-77518833 chr9:72291855-76851846 6.38981 4559984 984641 33401 13 | 12 chr9 chr9:76318527-81635697 chr9:76851847-80993198 5.55792 4141352 950098 33401 14 | 13 chr9 chr9:79934614-86583426 chr9:80993199-85503669 6.53557 4510453 959938 33401 15 | 14 chr9 chr9:85003669-90198805 chr9:85503670-89698805 5.76067 4195136 921120 33401 16 | 15 chr9 chr9:88782764-95717520 chr9:89698806-93952682 4.83563 4253875 926594 33401 17 | 16 chr9 chr9:93049744-100406254 chr9:93952683-98833139 4.00013 4880447 1037906 35261 18 | 17 chr9 chr9:98316139-104822677 chr9:98833140-103729527 4.00002 4896377 1084715 37434 19 | 18 chr9 chr9:102477675-108608207 chr9:103729528-107961151 6.29074 4231623 921950 33401 20 | 19 chr9 chr9:107461155-112914404 chr9:107961152-111988765 5.4151 4027609 885906 33401 21 | 20 chr9 chr9:110884256-117286194 chr9:111988766-116518097 7.63663 4529331 952109 33401 22 | 21 chr9 chr9:115990035-122160797 chr9:116518098-121316841 5.89725 4798735 1044664 33401 23 | 22 chr9 chr9:119914962-126564044 chr9:121316842-126048763 4.8212 4731921 1029577 33401 24 | 23 chr9 chr9:124210468-130777088 chr9:126048764-130277088 6.49924 4228323 950002 33401 25 | 24 chr9 chr9:129740930-134777095 chr9:130277089-134277093 11.1092 4000002 935682 34476 26 | 25 chr9 chr9:133777091-1000000000 chr9:134277094-1000000000 11.4483 4041406 999618 34009 27 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr1.txt: -------------------------------------------------------------------------------- 1 | 0 1 1:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr10.txt: -------------------------------------------------------------------------------- 1 | 0 10 10:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr10_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr10 chr10:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr11.txt: -------------------------------------------------------------------------------- 1 | 0 11 11:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr11_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr11 chr11:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr12.txt: -------------------------------------------------------------------------------- 1 | 0 12 12:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr12_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr12 chr12:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr13.txt: -------------------------------------------------------------------------------- 1 | 0 13 13:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr13_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr13 chr13:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr14.txt: -------------------------------------------------------------------------------- 1 | 0 14 14:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr14_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr14 chr14:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr15.txt: -------------------------------------------------------------------------------- 1 | 0 15 15:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr15_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr15 chr15:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr16.txt: -------------------------------------------------------------------------------- 1 | 0 16 16:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr16_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr16 chr16:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr17.txt: -------------------------------------------------------------------------------- 1 | 0 17 17:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr17_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr17 chr17:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr18.txt: -------------------------------------------------------------------------------- 1 | 0 18 18:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr18_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr18 chr18:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr19.txt: -------------------------------------------------------------------------------- 1 | 0 19 19:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr19_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr19 chr19:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr1_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr1 chr1:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr2.txt: -------------------------------------------------------------------------------- 1 | 0 2 2:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr20.txt: -------------------------------------------------------------------------------- 1 | 0 20 20:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr20_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr20 chr20:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr21.txt: -------------------------------------------------------------------------------- 1 | 0 21 21:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr21_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr21 chr21:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr22.txt: -------------------------------------------------------------------------------- 1 | 0 22 22:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr22_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr22 chr22:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr2_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr2 chr2:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr3.txt: -------------------------------------------------------------------------------- 1 | 0 3 3:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr3_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr3 chr3:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr4.txt: -------------------------------------------------------------------------------- 1 | 0 4 4:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr4_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr4 chr4:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr5.txt: -------------------------------------------------------------------------------- 1 | 0 5 5:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr5_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr5 chr5:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr6.txt: -------------------------------------------------------------------------------- 1 | 0 6 6:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr6_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr6 chr6:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr7.txt: -------------------------------------------------------------------------------- 1 | 0 7 7:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr7_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr7 chr7:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr8.txt: -------------------------------------------------------------------------------- 1 | 0 8 8:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr8_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr8 chr8:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr9.txt: -------------------------------------------------------------------------------- 1 | 0 9 9:1-1000000000 2 | -------------------------------------------------------------------------------- /resources/genomic_chunks/chunks_fullchromosome/chunks_chr9_rechr.txt: -------------------------------------------------------------------------------- 1 | 0 chr9 chr9:1-1000000000 2 | -------------------------------------------------------------------------------- /scripts/unkink_2way_genofile.py: -------------------------------------------------------------------------------- 1 | # coding: utf-8 2 | #new version of flip catching/correcting script that detects strand flips and corrects them back in RFmix output 3 | #this version fixes the RFmix output, .msp file with LAI calls for 2-way admixed individuals 4 | __author__ = 'egatkinson' 5 | 6 | import argparse 7 | import re 8 | import numpy as np 9 | 10 | def parse_args(): 11 | parser = argparse.ArgumentParser() 12 | parser.add_argument('--switches', help='file with LAI window calls regarding if genotypes need to be flipped there', required=True) 13 | parser.add_argument('--genofile', help='path stem to RFmix input VCF with phased genotypes, not including .vcf suffix', required=True) 14 | args = parser.parse_args() 15 | return(args) 16 | 17 | args = parse_args() 18 | switches = open(args.switches, 'r') 19 | genofile = open(args.genofile + '.vcf','r') 20 | outVCF = open(args.genofile + '.unkinked.vcf', 'w') 21 | 22 | #save the first 6 lines, the VCF header 23 | #head = genofile.readlines()[:6] 24 | 25 | #optimized to run much quicker 26 | #outVCF.write('\n'.strip().join(head)) 27 | genofile = open(args.genofile + '.vcf') 28 | 29 | #initialize documenting the current window to check 30 | chromosome = ("", 0, 0) 31 | 32 | #saves the current line in each file until out of the window, then checks next line. VCF and window switches file should be in incremental order. 33 | for line in genofile: 34 | if line.startswith("#"): 35 | outVCF.write(line) 36 | continue 37 | CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO, FORMAT, genos = line.strip().split('\t', 9) 38 | genos = genos.split('\t') 39 | output = '\t'.join([CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO, FORMAT]) 40 | POS = int(POS) 41 | 42 | while not (CHROM == chromosome[0] and ( chromosome[1] <= POS < chromosome[2])): 43 | window = switches.readline() 44 | if not window: 45 | break #when get to the end of the file, stop 46 | chrom, startbp, stopbp, startcm, stopcm, snps, calls = window.strip().split('\t', 6) 47 | calls = calls.split('\t') 48 | chromosome = (chrom, int(startbp), int(stopbp)) 49 | 50 | for i in range(len(genos)): #index by the number of individuals in the VCF file, should be the same number in the calls file 51 | hap = str(genos[i]) 52 | newhap = hap 53 | 54 | if str(calls[i]) == "True": #if the SNPs fall in a window which for that indiv is labeled switched, reverse the polymorphic sites 55 | if hap == "1|0": 56 | newhap = "0|1" 57 | elif hap == "0|1": 58 | newhap = "1|0" 59 | output += '\t' + newhap 60 | output += '\n' 61 | outVCF.write(output) 62 | outVCF.close() 63 | -------------------------------------------------------------------------------- /scripts/unkink_2way_mspfile.py: -------------------------------------------------------------------------------- 1 | 2 | # coding: utf-8 3 | 4 | #flip catching/correcting script that detects strand flips and corrects them back in RFmix output 5 | #this version fixes the RFmix output, .msp file with LAI calls for 2-way admixed individuals and outputs a file documenting the switch locations for the RFmix LAI call windows and whether that window was switched or not in each individual 6 | __author__ = 'egatkinson' 7 | 8 | import argparse 9 | import re 10 | import numpy as np 11 | 12 | def parse_args(): 13 | parser = argparse.ArgumentParser() 14 | parser.add_argument('--msp', help='path stem to RFmix msp file, not including .msp.tsv', required=True) 15 | args = parser.parse_args() 16 | return(args) 17 | 18 | 19 | args = parse_args() 20 | mspfile = open(args.msp + '.msp.tsv') 21 | mspfile.readline() 22 | header = mspfile.readline() 23 | chrom, startbp, stopbp, startcm, stopcm, snps, samples = header.split('\t', 6) 24 | state = {} 25 | switched = {} 26 | 27 | for i in range(len(samples)/2): 28 | state[i] = (float(0), [-1,-1]) 29 | switched[i] = False 30 | 31 | out = open(args.msp + '.Unkinked.msp.tsv', 'w') #output will be input filename suffixed with "Unkinked" 32 | out1 = open(args.msp + '.switches.txt', 'w') #also save the points where the switches happen. Export all windows, with whether switched = true or false. 33 | out.write(header) #currently only writing the second header line with the individual information 34 | 35 | for line in mspfile: 36 | chrom, startbp, stopbp, startcm, stopcm, snps, calls = line.strip().split('\t', 6) 37 | calls = calls.split('\t') 38 | output = '\t'.join([chrom, startbp, stopbp, startcm, stopcm, snps]) 39 | outswitches = '\t'.join([chrom, startbp, stopbp, startcm, stopcm, snps]) 40 | for i in range(len(calls)/2): 41 | hapA = calls[2*i] 42 | hapB = calls[2*i + 1] 43 | newhapA = hapA 44 | newhapB = hapB 45 | 46 | if hapA != hapB: 47 | if [hapA,hapB] != state[i][1] and (float(startcm) - 1) < state[i][0]: 48 | switched[i] = not switched[i] 49 | 50 | if switched[i]: 51 | newhapA = hapB 52 | newhapB = hapA 53 | 54 | state[i] = (float(stopcm), [hapA,hapB]) 55 | output += '\t' + newhapA + '\t' + newhapB 56 | outswitches += '\t' + str(switched[i]) 57 | output += '\n' 58 | outswitches += '\n' 59 | out.write(output) 60 | out1.write(outswitches) 61 | out.close() 62 | out1.close() 63 | 64 | --------------------------------------------------------------------------------