├── .gitignore ├── 01_git ├── Makefile ├── algorithms.png ├── comic1.jpg ├── git-cheat-sheet.md ├── git-intro.tex ├── git.png ├── github.png ├── rstudiogit.PNG ├── versioncontrol.PNG └── whatareyoudoing.jpg ├── 02_Rbasics ├── Rbasics.Rmd ├── Rbasics.md ├── Rhistory.Rhistory └── script.R ├── 03_Datawrangling ├── 01_GettingStarted.md ├── 02_R_StuffToKnow.md ├── 03_R_ExistingFunctionsToKnow.md ├── 04_R_WorkingWithDataFrames.md ├── 05_R_WritingFunctions.md ├── 06_R_Oracle.md ├── 07_DatawranglingNutshell.md └── ShellImage.jpg ├── 04_readingPlottingAnalysis ├── examples.Rmd ├── iris.csv ├── iris.xlsx └── script.R ├── 05_plottingBasics ├── plottingBasics.Rmd └── plotting_workshop.R ├── 06_datesAndTimes └── datesAndTimes.Rmd ├── 07_groupReinvigoration └── group.Rmd ├── 08_workflowOrganization ├── rstudio-workspace.png └── workflow.Rmd ├── 09_intro_ocean_data ├── 32H120030721.exc.csv ├── RV2010_2018.csv ├── intro_ocean_data.Rmd └── ocean_data.Rmd ├── 11_DataManipulation_dplyr └── dplyr_datamanipulation.Rmd ├── 12_R_Mapping ├── .gitignore ├── DataSetup.R ├── base-R.R ├── both.png ├── ggplot_maps.Rmd ├── leaflet.R ├── makemap.R └── oce_maps.Rmd ├── 13_sf_shp_mapping ├── .here ├── 13_sf_GIS.Rproj ├── DataSetup.R ├── Divisions │ ├── Divisions.dbf │ ├── Divisions.prj │ ├── Divisions.sbn │ ├── Divisions.sbx │ ├── Divisions.shp │ ├── Divisions.shp.xml │ └── Divisions.shx └── sf_GIS.Rmd ├── 14_Shiny_intro ├── 01_geyserApp │ ├── 01_geyserApp.Rproj │ └── app.R ├── 02_plotInteractionApp │ ├── 02_plotInteractionApp.Rproj │ └── app.R └── Shiny_intro.pptx ├── 16_ToolsScienceAdvice ├── README.md ├── RV2010_2018_trim.csv ├── ToolsScienceAdvice.7z ├── ToolsScienceAdvice.Rmd ├── ToolsScienceAdvice.Rproj ├── stickers-fish.jpg └── workshop_evaluation.csv ├── 17_2020_ideas_and_plans └── ideas_and_plans.Rmd ├── 18_Rbasics └── Rbasics.Rmd ├── 19_ctdDataInArchive ├── 00_fileDescription.png ├── 00_presentation.Rpres ├── 01_getDataFromArchive.R ├── 02_filenameBased.R ├── 03_polygonBased.R └── screenshots │ ├── 01_RDrive.PNG │ ├── 02_RDriveScience.PNG │ ├── 03_RDriveBioDataSvc.PNG │ ├── 05_Archive.PNG │ ├── 06_ARC.PNG │ ├── 07_ARCctdYears.PNG │ ├── 08_ARCctdYears2.PNG │ ├── 09_ARCctdYears3.PNG │ ├── 10_ctd2018.PNG │ ├── 12_BioDataScvSrc.PNG │ ├── 13_src2010s.PNG │ ├── 14_src2019.PNG │ ├── 15_srcCor2019001.PNG │ ├── 16_corCtd.PNG │ ├── 17_corCtdFiles.PNG │ ├── 18_corProcessing.PNG │ ├── 19_corProcessingTime.PNG │ ├── 20_corFolderlist.PNG │ ├── 21_corCtdFiles.PNG │ ├── 22_srcNed2019030.PNG │ ├── 23_nedFolderlist.PNG │ ├── 24_nedFilelist.PNG │ └── 25_nedFilelist2.PNG ├── 20_intro_to_oce ├── data │ ├── D001A078.ODF │ ├── D001A080.ODF │ ├── D001A082.ODF │ ├── D001A084.ODF │ ├── D001A090.ODF │ ├── D001A092.ODF │ ├── D001A094.ODF │ ├── D001A096.ODF │ ├── D001A098.ODF │ ├── D001A100.ODF │ ├── D001A102.ODF │ └── D001A160.ODF ├── oce_intro.Rmd └── oce_notebook.Rmd ├── 21_seawater_functions ├── D001A102.ODF └── seawater_functions.Rmd ├── 22_targets ├── 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