├── .devcontainer └── devcontainer.json ├── .gitattributes ├── .github └── workflows │ ├── np116.yml │ ├── np264.yml │ ├── py37.yml │ ├── pymac.yml │ └── python-publish.yml ├── .gitignore ├── .readthedocs.yml ├── CONTRIBUTING.rst ├── LICENCE.md ├── README.md ├── SeqMetrics ├── __init__.py ├── _cls.py ├── _main.py ├── _rgr.py └── utils.py ├── app.py ├── dev_requirements.txt ├── docs ├── Makefile ├── make.bat ├── requirements.txt └── source │ ├── cls.rst │ ├── conf.py │ ├── imgs │ ├── fig2.jpg │ ├── fig3.jpg │ ├── reg1.png │ ├── reg2.png │ ├── reg3.png │ └── reg4.png │ ├── index.rst │ ├── installation.rst │ ├── main.rst │ ├── quick_start.rst │ ├── rgr.rst │ └── utils.rst ├── examples ├── mean_vs_median.py └── readme.txt ├── paper ├── fig1.jpg ├── fig2.jpg ├── fig3.jpg ├── paper.bib └── paper.md ├── requirements.txt ├── setup.py └── tests ├── __init__.py ├── reference_for_seqmetric_tests.ipynb ├── test_cls.py ├── test_main.py ├── test_rgr.py └── test_utils.py 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