├── .gitignore ├── .travis.yml ├── LICENSE ├── changelog.md ├── doc ├── Makefile ├── _build │ ├── doctrees │ │ ├── autoencoder-integration.doctree │ │ ├── data-normalization.doctree │ │ ├── environment.pickle │ │ ├── filtering-and-merging-latent-factors.doctree │ │ ├── index.doctree │ │ ├── maui.doctree │ │ ├── saving-and-loading-models.doctree │ │ └── utils.doctree │ └── html │ │ ├── .buildinfo │ │ ├── _images │ │ ├── colinearity-merged.png │ │ ├── colinearity.png │ │ ├── hist.png │ │ └── integration-autoencoder.png │ │ ├── _modules │ │ ├── _io.html │ │ ├── builtins.html │ │ ├── index.html │ │ ├── io.html │ │ └── maui │ │ │ ├── model.html │ │ │ └── utils.html │ │ ├── _sources │ │ ├── autoencoder-integration.rst.txt │ │ ├── data-normalization.rst.txt │ │ ├── filtering-and-merging-latent-factors.rst.txt │ │ ├── index.rst.txt │ │ ├── maui.rst.txt │ │ ├── saving-and-loading-models.rst.txt │ │ └── utils.rst.txt │ │ ├── _static │ │ ├── ajax-loader.gif │ │ ├── alabaster.css │ │ ├── basic.css │ │ ├── classic.css │ │ ├── colinearity-merged.png │ │ ├── colinearity.png │ │ ├── comment-bright.png │ │ ├── comment-close.png │ │ ├── comment.png │ │ ├── custom.css │ │ ├── doctools.js │ │ ├── documentation_options.js │ │ ├── down-pressed.png │ │ ├── down.png │ │ ├── file.png │ │ ├── hex-maui-120.png │ │ ├── hex-maui-200.png │ │ ├── hex-maui.png │ │ ├── hist.png │ │ ├── icons8-beach-30.png │ │ ├── integration-autoencoder.png │ │ ├── jquery-3.2.1.js │ │ ├── jquery.js │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ ├── sidebar.js │ │ ├── underscore-1.3.1.js │ │ ├── underscore.js │ │ ├── up-pressed.png │ │ ├── up.png │ │ └── websupport.js │ │ ├── autoencoder-integration.html │ │ ├── data-normalization.html │ │ ├── filtering-and-merging-latent-factors.html │ │ ├── genindex.html │ │ ├── index.html │ │ ├── maui.html │ │ ├── objects.inv │ │ ├── py-modindex.html │ │ ├── saving-and-loading-models.html │ │ ├── search.html │ │ ├── searchindex.js │ │ └── utils.html ├── _static │ ├── colinearity-merged.png │ ├── colinearity.png │ ├── hist.png │ ├── icons8-beach-30.png │ └── integration-autoencoder.png ├── autoencoder-integration.rst ├── conf.py ├── data-normalization.rst ├── filtering-and-merging-latent-factors.rst ├── index.rst ├── maui.rst ├── saving-and-loading-models.rst └── utils.rst ├── hex-maui.png ├── maui ├── __init__.py ├── _version.py ├── autoencoders_architectures.py ├── maui_warnings.py ├── model.py └── utils.py ├── pytest.ini ├── readme.md ├── readthedocs.yml ├── setup.cfg ├── setup.py ├── test ├── __init__.py ├── test_maui.py └── test_utils.py └── vignette └── maui_vignette.ipynb /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BIMSBbioinfo/maui/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- 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