├── .github ├── build.sh ├── setup.sh └── workflows │ ├── build-main.yml │ └── build-pr.yml ├── .gitignore ├── LICENSE ├── LICENSE.txt ├── README.md ├── images └── screenshot.png ├── pom.xml ├── samples └── HeLa_H2BmCherry_GFPtubulin_Mitotracker.ims ├── scripts ├── DetectAndFilterSpots.groovy ├── DetectSurfaceAndTrack.groovy ├── GlobalStatistics.groovy ├── ImarisFijiDialogDemo.groovy ├── LabelAndTracks.groovy ├── SaveImageAsIms.groovy ├── celldemo.groovy └── celldemo_FindMaxima_makeSpots.groovy └── src ├── main └── java │ └── ch │ └── epfl │ └── biop │ └── imaris │ ├── EasyXT.java │ ├── ImarisCalibration.java │ ├── ItemQuery.java │ ├── ItemTracker.java │ ├── ItemType.java │ ├── SpotsDetector.java │ ├── StatsCreator.java │ ├── StatsQuery.java │ ├── SurfacesDetector.java │ ├── command │ ├── GetImarisDatasetCommand.java │ ├── GetSpotStatisticsCommand.java │ ├── GetStatisticsCommand.java │ ├── GetSurfaceCommand.java │ ├── GetSurfaceStatisticsCommand.java │ ├── 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