├── .gitignore ├── LICENSE ├── README.md ├── assets ├── fig2.png ├── graphical_abstract.png ├── video1.gif └── video2.gif ├── dataset.py ├── loss.py ├── model.py ├── requirements.txt ├── test.py ├── train.py └── utils.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/README.md -------------------------------------------------------------------------------- /assets/fig2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/assets/fig2.png -------------------------------------------------------------------------------- /assets/graphical_abstract.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/assets/graphical_abstract.png -------------------------------------------------------------------------------- /assets/video1.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/assets/video1.gif -------------------------------------------------------------------------------- /assets/video2.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/assets/video2.gif -------------------------------------------------------------------------------- /dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/dataset.py -------------------------------------------------------------------------------- /loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/loss.py -------------------------------------------------------------------------------- /model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/model.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | sklearn 2 | scikit-image 3 | nibabel 4 | -------------------------------------------------------------------------------- /test.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/test.py -------------------------------------------------------------------------------- /train.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/train.py -------------------------------------------------------------------------------- /utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BMIRDS/3dMRISegmentation/HEAD/utils.py --------------------------------------------------------------------------------