├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ └── R-CMD-check.yaml ├── .gitignore ├── DESCRIPTION ├── LICENSE.md ├── NAMESPACE ├── R ├── RcppExports.R ├── bootstrap_renyi.R ├── bootstrap_shannon.R ├── calc_ete.R ├── calc_te.R ├── calc_te_renyi.R ├── calc_te_shannon.R ├── code_sample.R ├── combine_sample.R ├── markov_boot_step.R ├── set_quiet.R ├── shuffle_renyi.R ├── shuffle_shannon.R ├── te_class.R ├── te_renyi.R ├── te_shannon.R ├── transfer_entropy.R └── zzz.R ├── README.Rmd ├── README.md ├── RTransferEntropy.Rproj ├── data └── stocks.rda ├── inst └── CITATION ├── man ├── calc_ete.Rd ├── calc_te.Rd ├── coef.transfer_entropy.Rd ├── figures │ └── README-contemp_plot-1.png ├── is.transfer_entropy.Rd ├── print.transfer_entropy.Rd ├── set_quiet.Rd ├── stocks.Rd ├── summary.transfer_entropy.Rd └── transfer_entropy.Rd ├── src ├── .gitignore ├── Makevars ├── Makevars.win ├── RcppExports.cpp ├── calculate_transition_probabilities.cpp ├── cluster_gen.cpp └── freq_table.cpp ├── tests ├── testthat.R └── testthat │ ├── test.calculate_transition_probabilities.R │ ├── test.cluster_gen.R │ └── test.transfer_entropy.R └── vignettes ├── bdpz2018.bib └── transfer-entropy.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BZPaper/RTransferEntropy/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.github/.gitignore: -------------------------------------------------------------------------------- 1 | *.html 2 | -------------------------------------------------------------------------------- /.github/workflows/R-CMD-check.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BZPaper/RTransferEntropy/HEAD/.github/workflows/R-CMD-check.yaml -------------------------------------------------------------------------------- /.gitignore: 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