├── LICENSE ├── README.md ├── bin └── rotate_circular_fasta.py ├── docs ├── Fig_workflow.png └── micropipe_logo.png ├── main.nf ├── nextflow.config ├── nextflow.config.v0.8 ├── nextflow_batch_template.sh ├── pawsey ├── infrastructure_optimisation_zeus.md ├── micropipe_ecoli_ST131_pawsey_guppy3.6.1_cpu.report.html ├── micropipe_ecoli_ST131_pawsey_guppy3.6.1_cpu.timeline.html ├── micropipe_ecoli_ST131_pawsey_guppy3.6.1_cpu.trace.txt ├── micropipe_ecoli_ST131_pawsey_guppy3.6.1_gpu.report.html ├── micropipe_ecoli_ST131_pawsey_guppy3.6.1_gpu.timeline.html ├── micropipe_ecoli_ST131_pawsey_guppy3.6.1_gpu.trace.txt ├── nextflow.config └── nextflow_batch_template.sh └── test_data ├── S24EC_1P_test.fastq.gz ├── S24EC_2P_test.fastq.gz ├── barcode01.fastq.gz └── samples_1.csv /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BeatsonLab-MicrobialGenomics/micropipe/HEAD/LICENSE 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