├── LICENSE ├── README.md ├── apt.txt ├── data ├── README.md └── get_shakespeare.sh ├── notebooks ├── .gitignore ├── CG_BWT_Reverse.ipynb ├── CG_BWT_SimpleBuild.ipynb ├── CG_BinarySearchSA.ipynb ├── CG_Bisect.ipynb ├── CG_BoyerMoore.ipynb ├── CG_BoyerMooreApprox.ipynb ├── CG_DP_EditDist.ipynb ├── CG_DP_Global.ipynb ├── CG_DP_Local.ipynb ├── CG_ErrorCorrect.ipynb ├── CG_FmIndex.ipynb ├── CG_GreedySCS.ipynb ├── CG_HMM.ipynb ├── CG_HighOrderMarkovChain.ipynb ├── CG_InvertedIndex1.ipynb ├── CG_InvertedIndex2.ipynb ├── CG_KmerIndex.ipynb ├── CG_KmerIndexHash.ipynb ├── CG_LCP_from_LCP1.ipynb ├── CG_LCS.ipynb ├── CG_MarkovChain.ipynb ├── CG_Naive.ipynb ├── CG_NaiveApprox.ipynb ├── CG_Radix.ipynb ├── CG_SCS.ipynb ├── CG_SimpleDeBruijn.ipynb ├── CG_StringBasics.ipynb ├── CG_SuffixPrefix_1.ipynb ├── CG_SuffixTree.ipynb ├── CG_SuffixTreeToSALcp.ipynb ├── CG_SuffixTrie.ipynb ├── CG_TrieMap.ipynb ├── CG_ZAlgorithm.ipynb ├── CG_deBruijn.ipynb ├── CG_go_001_StringBasics.ipynb ├── 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