├── LICENSE ├── README.md ├── docker └── Dockerfile ├── src ├── CommandLineOptions.h ├── Makefile ├── bloom_filter.hpp └── main.cpp └── utils ├── afteralignment.sh ├── bzip2-1.0.6.tar.gz ├── runBowtieRmDup.sh ├── seqan-library-2.4.0.tar.xz └── zlib-1.2.11.tar.gz /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/README.md -------------------------------------------------------------------------------- /docker/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/docker/Dockerfile -------------------------------------------------------------------------------- /src/CommandLineOptions.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/src/CommandLineOptions.h -------------------------------------------------------------------------------- /src/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/src/Makefile -------------------------------------------------------------------------------- /src/bloom_filter.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/src/bloom_filter.hpp -------------------------------------------------------------------------------- /src/main.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/src/main.cpp -------------------------------------------------------------------------------- /utils/afteralignment.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/utils/afteralignment.sh -------------------------------------------------------------------------------- /utils/bzip2-1.0.6.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/utils/bzip2-1.0.6.tar.gz -------------------------------------------------------------------------------- /utils/runBowtieRmDup.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/utils/runBowtieRmDup.sh -------------------------------------------------------------------------------- /utils/seqan-library-2.4.0.tar.xz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/utils/seqan-library-2.4.0.tar.xz -------------------------------------------------------------------------------- /utils/zlib-1.2.11.tar.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BilkentCompGen/hercules/HEAD/utils/zlib-1.2.11.tar.gz --------------------------------------------------------------------------------