├── .gitignore ├── .travis.yml ├── AUTHORS ├── Bio ├── PDB.hs └── PDB │ ├── Common.hs │ ├── EventParser │ ├── ExperimentalMethods.hs │ ├── FastParse.hs │ ├── HelixTypes.hs │ ├── PDBEventParser.hs │ ├── PDBEventPrinter.hs │ ├── PDBEvents.hs │ ├── PDBParsingAbstractions.hs │ ├── ParseATOM.hs │ ├── ParseCAVEAT.hs │ ├── ParseCISPEP.hs │ ├── ParseCONECT.hs │ ├── ParseCRYST1.hs │ ├── ParseDBREF.hs │ ├── ParseFORMUL.hs │ ├── ParseHEADER.hs │ ├── ParseHELIX.hs │ ├── ParseHET.hs │ ├── ParseHETNAM.hs │ ├── ParseHYDBND.hs │ ├── ParseIntRecord.hs │ ├── ParseJRNL.hs │ ├── ParseLINK.hs │ ├── ParseListRecord.hs │ ├── ParseMASTER.hs │ ├── ParseMODRES.hs │ ├── ParseMatrixRecord.hs │ ├── ParseObsoleting.hs │ ├── ParseREMARK.hs │ ├── ParseREVDAT.hs │ ├── ParseRecord.hs_template │ ├── ParseSEQADV.hs │ ├── ParseSEQRES.hs │ ├── ParseSHEET.hs │ ├── ParseSITE.hs │ ├── ParseSLTBRG.hs │ ├── ParseSPLIT.hs │ ├── ParseSSBOND.hs │ ├── ParseSpecListRecord.hs │ ├── ParseTER.hs │ ├── ParseTITLE.hs │ ├── ParseTVECT.hs │ └── StrandSense.hs │ ├── Fasta.hs │ ├── IO.hs │ ├── IO │ └── OpenAnyFile.hs │ ├── Iterable.hs │ ├── Iterable │ ├── Instances.hs │ └── Utils.hs │ ├── Structure.hs │ ├── Structure │ ├── Elements.hs │ ├── List.hs │ ├── Neighbours.hs │ └── Vector.hs │ ├── StructureBuilder.hs │ ├── StructureBuilder │ ├── Internals.hs │ └── Parallel.hs │ ├── StructurePrinter.hs │ └── Util │ ├── MissingInstances.hs │ └── ParFold.hs ├── Dockerfile ├── INSTALL ├── LICENSE ├── Makefile ├── Makefile.llvm ├── README.md ├── Setup.hs ├── changelog ├── docker_build.sh ├── hPDB.cabal ├── residue_dict ├── ALA_ideal.pdb ├── ARG_ideal.pdb ├── ASN_ideal.pdb ├── ASP_ideal.pdb ├── CYS_ideal.pdb ├── GLN_ideal.pdb ├── GLU_ideal.pdb ├── GLY_ideal.pdb ├── HIS_ideal.pdb ├── ILE_ideal.pdb ├── LEU_ideal.pdb ├── LYS_ideal.pdb ├── MET_ideal.pdb ├── PHE_ideal.pdb ├── PRO_ideal.pdb ├── README.txt ├── SER_ideal.pdb ├── THR_ideal.pdb ├── TRP_ideal.pdb ├── TYR_ideal.pdb └── VAL_ideal.pdb ├── speedtest ├── .gitignore ├── PDB2Fasta.sh 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