├── .Rbuildignore ├── .gitattributes ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check-dev.yaml │ ├── R-CMD-check-master.yaml │ ├── R-build-dev.yaml │ └── R-build-master.yaml ├── .gitignore ├── CONTRIBUTING.md ├── DESCRIPTION ├── Index.md ├── NAMESPACE ├── NEWS.md ├── PREP.Rproj ├── R ├── AddFunctionToPkg.R ├── AddModule.R ├── AddModules.R ├── AddTab.R ├── AddTestToPkg.R ├── BuildAndAddPkgToLocalCran.R ├── BuildPkgsFromGitHub.R ├── CopyFiles.R ├── CreateApp.R ├── CreateAppPackage.R ├── CreateAppPackageFromProjectCreation.R ├── CreateAppStandalone.R ├── CreateAppStandaloneFromProjectCreation.R ├── CreateLocalCranRepo.R ├── CreatePackage.R ├── CreatePackageFromProjectCreation.R ├── GetDirectoryAndName.R ├── MiscInternalFunctions.R ├── PREP.R ├── UpdateRepoOption.R └── createModule.R ├── README.md ├── _pkgdown.yml ├── docs ├── 404.html ├── BaSSProjectStep2.png ├── CONTRIBUTING.html ├── CreateProject.png ├── PREPProjectStep1.png ├── PrepPkg.png ├── PrepShinyApp.png ├── PrepShinyAsPkg.png ├── apple-touch-icon-120x120.png ├── apple-touch-icon-152x152.png ├── apple-touch-icon-180x180.png ├── apple-touch-icon-60x60.png ├── apple-touch-icon-76x76.png ├── apple-touch-icon.png ├── articles │ ├── Example1.html │ ├── Example4.png │ ├── index.html │ └── intro.html ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── favicon-16x16.png ├── favicon-32x32.png ├── favicon.ico ├── index.html ├── link.svg ├── logo.png ├── news │ └── index.html ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml └── reference │ ├── AddFunctionToPkg.html │ ├── AddModule.html │ ├── AddModules.html │ ├── AddTab.html │ ├── AddTestToPkg.html │ ├── CreateApp.html │ ├── CreateAppPackage.html │ ├── CreateAppPackageFromProjectCreation.html │ ├── CreateAppStandalone.html │ ├── CreateAppStandaloneFromProjectCreation.html │ ├── CreateModule.html │ ├── CreatePackage.html │ ├── CreatePackageFromProjectCreation.html │ ├── GetDirectoryAndName.html │ ├── PREP.html │ └── index.html ├── inst ├── ProjectTemplate │ ├── CalculationPackage │ │ └── .Rbuildignore │ ├── RShinyApp │ │ └── .Rhistory │ └── RShinyAppAsPkg │ │ ├── .Rbuildignore │ │ └── .Rhistory ├── library │ ├── app │ │ ├── mod_DefaultServer.R │ │ ├── mod_DefaultUI.R │ │ ├── mod_DemoTemplateServer.R │ │ ├── mod_DemoTemplateUI.R │ │ ├── mod_SubtabServer.R │ │ ├── mod_SubtabUI.R │ │ └── old │ │ │ ├── mod_ClusterServer.R │ │ │ ├── mod_ClusterUI.R │ │ │ ├── mod_ResultViewerServer.R │ │ │ └── mod_ResultViewerUI.R │ └── pkg │ │ ├── FunctionTemplate.R │ │ └── TestFunctionTemplate.R ├── rstudio │ └── templates │ │ └── project │ │ ├── PREPPackage.dcf │ │ ├── PREPShinyPkg.dcf │ │ ├── PREPShinyStandalone.dcf │ │ └── logo.png └── templates │ ├── AppPkg │ ├── .Rbuildignore │ ├── .Rhistory │ ├── AppPkg.Rproj │ ├── DESCRIPTION │ ├── Instructions.Rmd │ ├── Instructions.html │ ├── NAMESPACE │ ├── R │ │ ├── RunApp.R │ │ └── moduleServer.R │ └── tests │ │ └── testthat.R │ ├── AppStandalone │ ├── AppStandalone.Rproj │ ├── Global.R │ ├── Instructions.Rmd │ ├── Instructions.html │ ├── PREPShinyThemes.R │ ├── ShinyApp.R │ └── www │ │ ├── blue-skin-mod.css │ │ └── bootstrapCosmo.css │ ├── Pkg │ ├── .Rhistory │ ├── CalculationPackage.Rproj │ ├── DESCRIPTION │ ├── Instructions.Rmd │ ├── Instructions.html │ ├── NAMESPACE │ ├── R │ │ └── CalcPosteriorProbsBinom.R │ ├── man │ │ ├── CalcPosteriorProbsBinom.Rd │ │ └── hello.Rd │ └── tests │ │ ├── testthat.R │ │ └── testthat │ │ └── test-CalcPosteriorProbsBinom.R │ ├── README.md │ └── _shared │ ├── app │ ├── app_server.R │ └── app_ui.R │ ├── img │ ├── favicon.ico │ └── logo.png │ ├── modules │ ├── mod_FeedbackServer.R │ ├── mod_FeedbackUI.R │ ├── mod_HomeServer.R │ ├── mod_HomeUI.R │ ├── mod_OptionsServer.R │ ├── mod_OptionsThemeSwitcherServer.R │ ├── mod_OptionsThemeSwitcherUI.R │ ├── mod_OptionsUI.R │ ├── mod_SimulationServer.R │ └── mod_SimulationUI.R │ ├── templates │ ├── HomeAbout.Rmd │ ├── HomeAcknowledgements.Rmd │ ├── HomeGettingStarted.Rmd │ ├── PowerPointOutput.Rmd │ ├── ResultViewerPPT.Rmd │ ├── ResultViewerWord.Rmd │ ├── SimulationInstructions.Rmd │ ├── SimulationIntro.Rmd │ ├── WordOutput.Rmd │ ├── ppt.potx │ └── wordstyle.docx │ └── themes │ ├── BoldRed.R │ └── poor_mans_flatly2.R ├── logo.png ├── man ├── AddFunctionToPkg.Rd ├── AddModule.Rd ├── AddModules.Rd ├── AddTab.Rd ├── AddTestToPkg.Rd ├── BuildAndAddPkgToLocalCran.Rd ├── BuildPkgsFromGitHub.Rd ├── CreateApp.Rd ├── CreateAppPackage.Rd ├── CreateAppPackageFromProjectCreation.Rd ├── CreateAppStandalone.Rd ├── CreateAppStandaloneFromProjectCreation.Rd ├── CreateLocalCranRepo.Rd ├── CreateModule.Rd ├── CreatePackage.Rd ├── CreatePackageFromProjectCreation.Rd ├── GetDirectoryAndName.Rd ├── PREP.Rd └── UpdateRepoOption.Rd ├── pkgdown └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ 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