├── .coveragerc ├── .github └── workflows │ ├── build-docs.yml │ ├── publish-pypi.yml │ └── run-tests.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yml ├── AUTHORS.md ├── CHANGELOG.md ├── CONTRIBUTING.md ├── LICENSE.txt ├── README.md ├── docs ├── Makefile ├── _static │ └── .gitignore ├── authors.md ├── changelog.md ├── conf.py ├── contributing.md ├── index.md ├── license.md ├── readme.md ├── requirements.txt └── tutorial.md ├── lib ├── CMakeLists.txt └── src │ └── rdswrapper.cpp ├── pyproject.toml ├── setup.cfg ├── setup.py ├── src └── rds2py │ ├── PyRdsReader.py │ ├── __init__.py │ ├── generics.py │ ├── rdsutils.py │ ├── read_atomic.py │ ├── read_compressed_list.py │ ├── read_delayed_matrix.py │ ├── read_dict.py │ ├── read_factor.py │ ├── read_frame.py │ ├── read_granges.py │ ├── read_mae.py │ ├── read_matrix.py │ ├── read_rle.py │ ├── read_sce.py │ └── read_se.py ├── tests ├── conftest.py ├── data │ ├── atomic_attr.rds │ ├── atomic_chars.rds │ ├── atomic_chars_unicode.rds │ ├── atomic_complex.rds │ ├── atomic_double.rds │ ├── atomic_ints.rds │ ├── atomic_ints_with_names.rds │ ├── atomic_logical.rds │ ├── atomic_logical_wNA.rds │ ├── atomic_raw.rds │ ├── compressedlist_char.rds │ ├── compressedlist_int.rds │ ├── compressedlist_logical.rds │ ├── compressedlist_numeric.rds │ ├── compressedlist_splitdframe.rds │ ├── data.frame.rds │ ├── example_anndata.h5ad │ ├── generate_files.R │ ├── granges.rds │ ├── grangeslist.rds │ ├── h5sparse.rds │ ├── lists.rds │ ├── lists_df.rds │ ├── lists_df_rownames.rds │ ├── lists_nested.rds │ ├── lists_nested_deep.rds │ ├── matrix_with_dim_names.rds │ ├── matrix_with_row_names.rds │ ├── numpy_dtype.rds │ ├── ranged_se.rds │ ├── s4_class.rds │ ├── s4_dense_matrix.rds │ ├── s4_matrix.rds │ ├── s4_matrix_dgt.rds │ ├── scalar_int.rds │ ├── simple_factors.rds │ ├── simple_list.rds │ ├── simple_mae.rds │ ├── simple_rle.rds │ ├── simple_sce.rds │ └── sumexpt.rds ├── test_atomics.py ├── test_clists.py ├── test_delayedmatrices.py ├── test_dict.py ├── test_factors.py ├── test_frames.py ├── test_granges.py ├── test_mae.py ├── test_matrices.py ├── test_rle.py ├── test_s4.py ├── test_sce.py └── test_se.py └── tox.ini /.coveragerc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BiocPy/rds2py/HEAD/.coveragerc -------------------------------------------------------------------------------- /.github/workflows/build-docs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BiocPy/rds2py/HEAD/.github/workflows/build-docs.yml -------------------------------------------------------------------------------- /.github/workflows/publish-pypi.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BiocPy/rds2py/HEAD/.github/workflows/publish-pypi.yml 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