Workshops, keynote presentations, and more
" 4 | image: "img/carousel/BioC2023_v4.png" 5 | -------------------------------------------------------------------------------- /data/clients/002.ozette.gold.yaml: -------------------------------------------------------------------------------- 1 | name: "Ozette" 2 | name2: "" 3 | image: "/img/clients/ozette_logo_resized.png" 4 | name2: "" 5 | url: "https://www.ozette.com/" 6 | name2: "" 7 | level: "gold" 8 | name2: "" 9 | -------------------------------------------------------------------------------- /data/clients/003.microsoft.gold.yaml: -------------------------------------------------------------------------------- 1 | name: "Microsoft" 2 | name2: "" 3 | image: "/img/clients/Microsoft.jpg" 4 | name2: "" 5 | url: "https://www.microsoft.com/" 6 | name2: "" 7 | level: "gold" 8 | name2: "" 9 | -------------------------------------------------------------------------------- /data/clients/006.posit.silver.yaml: -------------------------------------------------------------------------------- 1 | name: "Posit" 2 | name2: "" 3 | image: "/img/clients/posit-logo-fullcolor-TM.png" 4 | name2: "" 5 | url: "https://posit.co/" 6 | name2: "" 7 | level: "silver" 8 | name2: "" 9 | -------------------------------------------------------------------------------- /content/abstracts/paper71.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Epidemiology for Bioinformaticians" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper71">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper96.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Mentoring Opportunities with Outreachy" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper96">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/track5.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Epigenetics and multi-omics track" 3 | tags: ["Short talks track"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< tracks track="track5">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /data/clients/008.bluebird.other.yaml: -------------------------------------------------------------------------------- 1 | name: "Bluebirdbio" 2 | name2: "" 3 | image: "/img/clients/bluebird.png" 4 | name2: "" 5 | url: "https://www.bluebirdbio.com/" 6 | name2: "" 7 | level: "other" 8 | name2: "" 9 | -------------------------------------------------------------------------------- /content/abstracts/paper40.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "cytofQC: A better way to clean cytof data" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper40">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper73.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Genotype calling from Recount3 RNA-seq data" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper73">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/contact.md: -------------------------------------------------------------------------------- 1 | +++ 2 | title = "Contact" 3 | id = "contact" 4 | +++ 5 | 6 | # We are here to help you 7 | 8 | ## Members of organizing committees 9 | 10 | **Bold** highlights leaders of the committees 11 | -------------------------------------------------------------------------------- /data/clients/004.novartis.silver.yaml: -------------------------------------------------------------------------------- 1 | name: "Novartis" 2 | name2: "" 3 | image: "/img/clients/novartis_logo_pos_rgb.png" 4 | name2: "" 5 | url: "https://www.novartis.com/" 6 | name2: "" 7 | level: "silver" 8 | name2: "" 9 | -------------------------------------------------------------------------------- /data/clients/007.bms.other.yaml: -------------------------------------------------------------------------------- 1 | name: "Bristol Myers Squibb" 2 | name2: "" 3 | image: "/img/clients/bristol-myers-squibb.png" 4 | name2: "" 5 | url: "https://www.bms.com/" 6 | name2: "" 7 | level: "other" 8 | name2: "" 9 | -------------------------------------------------------------------------------- /content/abstracts/paper12.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "rworkflows: taming the Wild West of R packages" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper12">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper45.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Preprocessing and analysis of microRNA-seq data" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper45">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper59.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "ontoProc - Ontology interfaces for Bioconductor" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper59">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper7.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Orchestrating Hi-C analysis with Bioconductor" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper7">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/papercab.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Meet the Community Advisory Board (CAB)" 3 | tags: ["Meet the team "] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="papercab">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/papertab.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Meet the Technical Advisory Board (TAB)" 3 | tags: ["Meet the team "] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="papertab">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /data/carousel/multipurpose1.yaml: -------------------------------------------------------------------------------- 1 | weight: 1 2 | title: "Bioconductor conference, August 2-4, 2023" 3 | description: "Hybrid format, Dana-Farber Cancer Institute, Boston, MA
" 4 | image: "img/carousel/BioC2023_v2.png" 5 | -------------------------------------------------------------------------------- /data/clients/005.rconsortium.silver.yaml: -------------------------------------------------------------------------------- 1 | name: "R Consortium" 2 | name2: "" 3 | image: "/img/clients/R_consortium.png" 4 | name2: "" 5 | url: "https://www.r-consortium.org/" 6 | name2: "" 7 | level: "silver" 8 | name2: "" 9 | -------------------------------------------------------------------------------- /content/abstracts/paper3.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Tidy genomic and transcriptomic single-cell analyses" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper3">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper4.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Unraveling Immunogenomic Diversity in Single-Cell Data" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper4">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper48.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "High-Performance Computing in R for Genomic Research**" 3 | tags: ["Workshop"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper48">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper57.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "BiocPy: enabling Bioconductor workflows in Python" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper57">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper95.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Bringing Sweave Vignettes Into The Modern Age With R" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper95">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /data/carousel/multipurpose2.yaml: -------------------------------------------------------------------------------- 1 | weight: 2 2 | title: "Bioconductor conference, August 2-4, 2023" 3 | description: "Current developments within and beyond the Bioconductor project
" 4 | image: "img/carousel/BioC2023_v3.png" 5 | -------------------------------------------------------------------------------- /content/abstracts/paper10.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "On the Dependency Heaviness of CRAN/Bioconductor Ecosystem" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper10">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper38.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Differential Expression Analysis using Limma and qsvaR" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper38">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper60.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Orchestrating microbiome multi-omics with R/Bioconductor" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper60">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper64.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Bioconductor Carpentries global teaching program" 3 | tags: ["Birds of a Feather"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper64">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper74.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "SPAMMER: Spatial Analysis of Multi-omics Measurements in R" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper74">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /data/clients/009.stickermule.other.yaml: -------------------------------------------------------------------------------- 1 | name: "Sticker Mule" 2 | name2: "" 3 | image: "/img/clients/01-sticker-mule-logo-dark-stacked.png" 4 | name2: "" 5 | url: "https://mule.to/p3y6" 6 | name2: "" 7 | level: "other" 8 | name2: "" 9 | -------------------------------------------------------------------------------- /themes/hugo-universal-theme/static/css/custom.css: -------------------------------------------------------------------------------- 1 | /* your styles go here */ 2 | 3 | .box-image-text .image { 4 | min-height: 200px; 5 | max-height: 200px; 6 | } 7 | 8 | .box-simple { 9 | min-height: 230px; 10 | } 11 | -------------------------------------------------------------------------------- /content/abstracts/paper27.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "A shiny application for single cell RNA-seq visualization" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper27">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper13.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "A novel statistical method for single isoform proteogenomics inference" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper13">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper18.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "DESpace: a novel analysis framework to discover spatially variable genes" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper18">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper24.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "A Bioconductor-style differential expression analysis powered by SPEAQeasy*" 3 | tags: ["Workshop"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper24">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper37.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "lute, a new framework for bulk transcriptomics deconvolution experiments" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper37">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper52.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "extraChIPs: Detection and Visualisation of Differential ChIP-Seq Signal" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper52">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper77.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Practical tools for quantitative deidentification and return of results" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper77">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /data/clients/001.moderna.platinum.yaml: -------------------------------------------------------------------------------- 1 | name: "Moderna Therapeutics" 2 | name2: "" 3 | image: "/img/clients/moderna-therapeutics-logo_resized.png" 4 | name2: "" 5 | url: "https://www.modernatx.com/" 6 | name2: "" 7 | level: "platinum" 8 | name2: "" 9 | -------------------------------------------------------------------------------- /data/features/print.yaml: -------------------------------------------------------------------------------- 1 | weight: 2 2 | name: "Print" 3 | icon: "fas fa-print" 4 | url: "" 5 | description: "Advantage old had otherwise sincerity dependent additions. It in adapted natural hastily is justice. Six draw you him full not mean evil." 6 | -------------------------------------------------------------------------------- /content/abstracts/paper20.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Modeling the effects of nicotine and smoking exposures on the developing brain" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper20">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper33.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "MultimodalExperiment: Integrative Bulk and Single-Cell Experiment Container" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper33">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper34.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Tree-based differential testing using inferential replicate counts for RNASeq" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper34">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper44.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Isoformic: Isoform level biological interpretation from transcriptomic data" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper44">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper65.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Statistical methods for spatial Multiplexed Ion-Beam Imaging data analysis" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper65">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper68.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Enabling Reusable and Reproducible Genomic Data Management and Analysis in R" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper68">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper70.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Use R to Create and Execute Reproducible CWL Workflows for Genomic Research" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper70">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper81.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Interactive analysis of single-cell data using flexible workflows with SCTK2.0" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper81">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper83.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "GHA-Built: Building binaries for R/Bioconductor packages via Github Actions" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper83">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper85.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Voyager: Exploratory spatial data analysis from geospatial to spatial -omics**" 3 | tags: ["Workshop"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper85">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper9.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "rGREAT: an R/Bioconductor Package for Functional Enrichment on Genomic Regions" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper9">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /data/features/uiux.yaml: -------------------------------------------------------------------------------- 1 | weight: 6 2 | name: "UI/UX" 3 | icon: "fas fa-user" 4 | url: "" 5 | description: "Am terminated it excellence invitation projection as. She graceful shy believed distance use nay. Lively is people so basket ladies window expect." 6 | -------------------------------------------------------------------------------- /content/abstracts/paper39.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Analyzing Spatially-Resolved Transcriptomics Data from Visium using spatialLIBD" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper39">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper50.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "AnVILWorkflow: A runnable workflow package for Cloud-implemented analysis pipelines" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper50">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper75.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Benchmarking Spot Deconvolution Methods in the Human Dorsolateral Prefrontal Cortex" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper75">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper89.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "singlet: Fast, scalable, interpretable, in-core analysis of big single-cell data" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper89">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper90.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "demuxSNP: supervised demultiplexing of scRNAseq data using cell hashing and SNPs" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper90">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper94.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Simplify your BSgenome workflow: Creating BSgenome Data Packages With BSgenomeForge" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper94">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /data/features/email.yaml: -------------------------------------------------------------------------------- 1 | weight: 5 2 | name: "Email Marketing" 3 | icon: "far fa-envelope" 4 | url: "" 5 | description: "Advantage old had otherwise sincerity dependent additions. It in adapted natural hastily is justice. Six draw you him full not mean evil." 6 | -------------------------------------------------------------------------------- /data/features/seo.yaml: -------------------------------------------------------------------------------- 1 | weight: 3 2 | name: "SEO and SEM" 3 | icon: "fas fa-globe" 4 | url: "" 5 | description: "Am terminated it excellence invitation projection as. She graceful shy believed distance use nay. Lively is people so basket ladies window expect." 6 | -------------------------------------------------------------------------------- /content/abstracts/paper19.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Bridges from python to Bioconductor: applications in genetics and single-cell genomics**" 3 | tags: ["Workshop"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper19">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper41.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Non-negative spatial matrix factorization for multi-sample spatial transcriptomics data" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper41">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper46.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "SCArray.sat – Large-scale single-cell RNA-seq data analysis using GDS files and Seurat" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper46">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper49.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper49">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper72.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Giotto Suite: A multi-scale and technology-agnostic spatial omics analysis framework" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper72">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper79.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Reproducible and programmatic analysis of flow cytometry experiments with the cytoverse**" 3 | tags: ["Workshop"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper79">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper87.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Slicing and dicing aligned genomic and transcriptomic reads for genetic epidemiology" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper87">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper91.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "MolEvolvR: A web-app for characterizing proteins using molecular evolution and phylogeny" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper91">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /data/features/consulting.yaml: -------------------------------------------------------------------------------- 1 | weight: 4 2 | name: "Consulting" 3 | icon: "fas fa-lightbulb" 4 | url: "" 5 | description: "Fifth abundantly made Give sixth hath. Cattle creature i be don't them behold green moved fowl Moved life us beast good yielding. Have bring." 6 | -------------------------------------------------------------------------------- /data/features/webdesign.yaml: -------------------------------------------------------------------------------- 1 | weight: 1 2 | name: "Webdesign" 3 | icon: "fas fa-desktop" 4 | url: "" 5 | description: "Fifth abundantly made Give sixth hath. Cattle creature i be don't them behold green moved fowl Moved life us beast good yielding. Have bring." 6 | -------------------------------------------------------------------------------- /content/abstracts/paper15.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Statistical method to rank spatially variable genes adjusted for mean-variance relationship" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper15">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper16.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "mbQTL: An R/Bioconductor Package for Microbial Quantitative Trait Loci (QTL) Estimation" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper16">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper23.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Spatial Multi-omic Profiling of Alzheimer’s Disease in the Human Inferior Temporal Cortex" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper23">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper29.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Statial: A Bioconductor package for identifying spatially-related changes in cell state" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper29">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper32.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment" 3 | tags: ["Package demo"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper32">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper61.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "A phylogenetic method linking nucleotide substitution rates to continuous trait evolution" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper61">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper66.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper66">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper78.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Noninvasive, low-cost RNA-sequencing enhances discovery potential of transcriptome studies" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper78">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper31.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Bioconductor and the Latin American Bioinformatics Landscape: Challenges and Opportunities" 3 | tags: ["Birds of a Feather"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper31">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper62.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "bugphyzz: a harmonized data resource and software for enrichment analysis of microbial physiologies" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper62">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper76.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Comparative analysis of annotation tools in grouping cell types from single cell RNA sequencing data" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper76">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /layouts/partials/iframe.html: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /content/abstracts/paper88.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Injecting rigor and reproducibility into CITE-seq workflows: decontamination and in silico gating approaches" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper88">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper21.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Visualizing genomic characteristics across an RNA-Seq based reference landscape of normal and neoplastic brain" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper21">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper43.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Optimizing signal and correcting for between-cell-type biases in heterogenous spatial and single-cell RNA-seq" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper43">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper92.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Standardization of cell-free methylated DNA immunoprecipitation (cfMeDIP) results for population-scale inference" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper92">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/news/2022-01-22-call_for_abstracts_opens.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Call for abstracts is open" 3 | date: 2022-01-22 4 | draft: false 5 | type: "blog" 6 | --- 7 | 8 | 9 | You can register your abstract at: https://openreview.net/group?id=bioconductor.org/BioC/2022/Conference 10 | -------------------------------------------------------------------------------- /content/abstracts/paper63.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "Forensics for Multi-Omics Data Generation: Diagnosing and Resolving Mislabeled Samples by Integrating Multiple Data Sources" 3 | tags: ["Short talk"] 4 | type: "blog" 5 | draft: false 6 | --- 7 | 8 | {{< abstracts paper="paper63">}} 9 | 10 | 11 | -------------------------------------------------------------------------------- /content/abstracts/paper8.md: -------------------------------------------------------------------------------- 1 | --- 2 | title: "The 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