├── .Rbuildignore ├── .gitignore ├── DESCRIPTION ├── LICENSE.note ├── NAMESPACE ├── NEWS ├── R ├── AllGenerics.R ├── BatchtoolsParam-class.R ├── BiocParallel-defunct.R ├── BiocParallelParam-class.R ├── DeveloperInterface.R ├── DoparParam-class.R ├── ErrorHandling.R ├── MulticoreParam-class.R ├── SerialParam-class.R ├── SnowParam-class.R ├── SnowParam-utils.R ├── TransientMulticoreParam-class.R ├── bpaggregate-methods.R ├── bpbackend-methods.R ├── bpinit.R ├── bpisup-methods.R ├── bpiterate-methods.R ├── bplapply-methods.R ├── bploop.R ├── bpmapply-methods.R ├── bpoptions.R ├── bpschedule-methods.R ├── bpstart-methods.R ├── bpstop-methods.R ├── bpvalidate.R ├── bpvec-methods.R ├── bpvectorize-methods.R ├── bpworkers-methods.R ├── cpp11.R ├── ipcmutex.R ├── log.R ├── progress.R ├── prototype.R ├── reducer.R ├── register.R ├── rng.R ├── utilities.R ├── worker-number.R └── worker.R ├── README.md ├── cleanup ├── configure ├── configure.ac ├── inst ├── LICENSE_1_0.txt ├── RMPInode.sh ├── RSOCKnode.sh ├── snow │ ├── RMPInode.R │ └── RSOCKnode.R └── unitTests │ ├── test_BatchtoolsParam.R │ ├── test_BiocParallelParam.R │ ├── test_DoparParam.R │ ├── test_MulticoreParam.R │ ├── test_SerialParam.R │ ├── test_SnowParam.R │ ├── test_bpaggregate.R │ ├── test_bpexportglobals.R │ ├── test_bpiterate.R │ ├── test_bplapply.R │ ├── test_bploop.R │ ├── test_bpmapply.R │ ├── test_bpoptions.R │ ├── test_bpvalidate.R │ ├── test_bpvec.R │ ├── test_bpvectorize.R │ ├── test_errorhandling.R │ ├── test_internal_rng_stream.R │ ├── test_ipcmutex.R │ ├── test_logging.R │ ├── test_refclass.R │ ├── test_rng.R │ ├── test_script │ └── test-sge-template.tmpl │ ├── test_utilities.R │ └── test_worker-number.R ├── log.txt ├── man ├── BatchtoolsParam-class.Rd ├── BiocParallel-defunct.Rd ├── BiocParallel-deprecated.Rd ├── BiocParallel-package.Rd ├── BiocParallelParam-class.Rd ├── DeveloperInterface.Rd ├── DoparParam-class.Rd ├── MulticoreParam-class.Rd ├── SerialParam-class.Rd ├── SnowParam-class.Rd ├── bpaggregate.Rd ├── bpiterate.Rd ├── bplapply.Rd ├── bploop.Rd ├── bpmapply.Rd ├── bpok.Rd ├── bpoptions.Rd ├── bpschedule.Rd ├── bptry.Rd ├── bpvalidate.Rd ├── bpvec.Rd ├── bpvectorize.Rd ├── ipcmutex.Rd ├── register.Rd └── worker-number.Rd ├── src ├── Makevars.in ├── Makevars.ucrt ├── boost_patch_1_87 │ └── interprocess │ │ ├── detail │ │ └── managed_memory_impl.hpp │ │ ├── managed_shared_memory.hpp │ │ └── segment_manager.hpp ├── cpp11.cpp └── ipcmutex.cpp ├── tests └── test.R └── vignettes ├── BiocParallel_BatchtoolsParam.Rmd ├── Errors_Logs_And_Debugging.Rmd ├── Introduction_To_BiocParallel.Rmd └── Random_Numbers.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/Bioconductor/BiocParallel/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 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