├── .gitmodules ├── README.md ├── alphafold_addon ├── customized │ ├── data_custom │ │ ├── __init__.py │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── custom_params.cpython-38.pyc │ │ │ ├── feature_processing.cpython-38.pyc │ │ │ ├── mmcif_parsing.cpython-38.pyc │ │ │ ├── msa_identifiers.cpython-38.pyc │ │ │ ├── msa_pairing.cpython-38.pyc │ │ │ ├── parsers.cpython-38.pyc │ │ │ ├── pdb_parsing.cpython-38.pyc │ │ │ ├── pipeline.cpython-38.pyc │ │ │ ├── pipeline_custom.cpython-38.pyc │ │ │ ├── pipeline_multimer.cpython-38.pyc │ │ │ ├── pipeline_multimer_custom.cpython-38.pyc │ │ │ ├── templates.cpython-38.pyc │ │ │ └── templates_custom.cpython-38.pyc │ │ ├── custom_params.py │ │ ├── feature_processing.py │ │ ├── mmcif_parsing.py │ │ ├── msa_identifiers.py │ │ ├── msa_pairing.py │ │ ├── parsers.py │ │ ├── pdb_parsing.py │ │ ├── pipeline.py │ │ ├── pipeline_custom.py │ │ ├── pipeline_multimer.py │ │ ├── pipeline_multimer_custom.py │ │ ├── templates.py │ │ ├── templates_custom.py │ │ └── tools │ │ │ ├── __init__.py │ │ │ ├── __pycache__ │ │ │ ├── __init__.cpython-38.pyc │ │ │ ├── hhblits.cpython-38.pyc │ │ │ ├── hhsearch.cpython-38.pyc │ │ │ ├── hmmbuild.cpython-38.pyc │ │ │ ├── hmmsearch.cpython-38.pyc │ │ │ ├── jackhmmer.cpython-38.pyc │ │ │ ├── kalign.cpython-38.pyc │ │ │ └── utils.cpython-38.pyc │ │ │ ├── hhblits.py │ │ │ ├── hhsearch.py │ │ │ ├── hmmbuild.py │ │ │ ├── hmmsearch.py │ │ │ ├── jackhmmer.py │ │ │ ├── kalign.py │ │ │ └── utils.py │ ├── run_alphafold_custom.py │ └── run_alphafold_multimer_custom.py └── default │ └── run_alphafold_pre.py ├── bin ├── .db_option.default ├── heteromer.py ├── homomer.py └── monomer.py ├── configure.py ├── docker ├── Dockerfile ├── configure.py ├── db_option ├── requirements.txt ├── run_docker.py └── run_multicom3.sh ├── download_database_and_tools.py ├── evaluation ├── README.md ├── codes │ ├── CASP15_official_results │ │ ├── all_tmscore.csv │ │ ├── best_tmscores.csv │ │ ├── global_scores.csv │ │ ├── native_scores │ │ │ ├── H1106.csv │ │ │ ├── H1111.csv │ │ │ ├── H1114.csv │ │ │ ├── H1129.csv │ │ │ ├── H1134.csv │ │ │ ├── H1135.csv │ │ │ ├── H1137.csv │ │ │ ├── H1140.csv │ │ │ ├── H1141.csv │ │ │ ├── H1142.csv │ │ │ ├── H1143.csv │ │ │ ├── H1144.csv │ │ │ ├── H1151.csv │ │ │ ├── H1157.csv │ │ │ ├── H1166.csv │ │ │ ├── H1167.csv │ │ │ ├── H1168.csv │ │ │ ├── H1171.csv │ │ │ ├── H1172.csv │ │ │ ├── H1185.csv │ │ │ ├── T1109.csv │ │ │ ├── T1110.csv │ │ │ ├── T1113.csv │ │ │ ├── T1115.csv │ │ │ ├── T1121.csv │ │ │ ├── T1123.csv │ │ │ ├── T1124.csv │ │ │ ├── T1127.csv │ │ │ ├── T1132.csv │ │ │ ├── T1153.csv │ │ │ ├── T1160.csv │ │ │ ├── T1161.csv │ │ │ ├── T1170.csv │ │ │ ├── T1173.csv │ │ │ ├── T1174.csv │ │ │ ├── T1176.csv │ │ │ ├── T1178.csv │ │ │ ├── T1179.csv │ │ │ ├── T1181.csv │ │ │ ├── T1187.csv │ │ │ └── T1192.csv │ │ ├── scripts │ │ │ ├── cal_best_avg.py │ │ │ ├── cal_max_score.py │ │ │ ├── cal_top1_avg.py │ │ │ ├── extract_native_interface_scores.py │ │ │ ├── generate_target_results.py │ │ │ ├── get_all_score.py │ │ │ ├── zscore_1_all.pl │ │ │ └── zscore_5_all.pl │ │ ├── target_results │ │ │ ├── H1106.results │ │ │ ├── H1111.results │ │ │ ├── H1114.results │ │ │ ├── H1129.results │ │ │ ├── H1134.results │ │ │ ├── H1135.results │ │ │ ├── H1137.results │ │ │ ├── H1140.results │ │ │ ├── H1141.results │ │ │ ├── H1142.results │ │ │ ├── H1143.results │ │ │ ├── H1144.results │ │ │ ├── H1151.results │ │ │ ├── H1157.results │ │ │ ├── H1166.results │ │ │ ├── H1167.results │ │ │ ├── H1168.results │ │ │ ├── H1171.results │ │ │ ├── H1172.results │ │ │ ├── H1185.results │ │ │ ├── T1109.results │ │ │ ├── T1110.results │ │ │ ├── T1113.results │ │ │ ├── T1115.results │ │ │ ├── T1121.results │ │ │ ├── T1123.results │ │ │ ├── T1124.results │ │ │ ├── T1127.results │ │ │ ├── T1132.results │ │ │ ├── T1153.results │ │ │ ├── T1160.results │ │ │ ├── T1161.results │ │ │ ├── T1170.results │ │ │ ├── T1173.results │ │ │ ├── T1174.results │ │ │ ├── T1176.results │ │ │ ├── T1178.results │ │ │ ├── T1179.results │ │ │ ├── T1181.results │ │ │ ├── T1187.results │ │ │ └── T1192.results │ │ └── z_scores │ │ │ ├── H1106_zscore_1.txt │ │ │ ├── H1106_zscore_1_sorted.txt │ │ │ ├── H1106_zscore_5.txt │ │ │ ├── H1106_zscore_5_sorted.txt │ │ │ ├── H1111_zscore_1.txt │ │ │ ├── H1111_zscore_1_sorted.txt │ │ │ ├── H1111_zscore_5.txt │ │ │ ├── H1111_zscore_5_sorted.txt │ │ │ ├── H1114_zscore_1.txt │ │ │ ├── H1114_zscore_1_sorted.txt │ │ │ ├── H1114_zscore_5.txt │ │ │ ├── H1114_zscore_5_sorted.txt │ │ │ ├── H1129_zscore_1.txt │ │ │ ├── H1129_zscore_1_sorted.txt │ │ │ ├── H1129_zscore_5.txt │ │ │ ├── H1129_zscore_5_sorted.txt │ │ │ ├── H1134_zscore_1.txt │ │ │ ├── H1134_zscore_1_sorted.txt │ │ │ ├── H1134_zscore_5.txt │ │ │ ├── H1134_zscore_5_sorted.txt │ │ │ ├── H1135_zscore_1.txt │ │ │ ├── H1135_zscore_1_sorted.txt │ │ │ ├── H1135_zscore_5.txt │ │ │ ├── H1135_zscore_5_sorted.txt │ │ │ ├── H1137_zscore_1.txt │ │ │ ├── H1137_zscore_1_sorted.txt │ │ │ ├── H1137_zscore_5.txt │ │ │ ├── H1137_zscore_5_sorted.txt │ │ │ ├── H1140_zscore_1.txt │ │ │ ├── H1140_zscore_1_sorted.txt │ │ │ ├── H1140_zscore_5.txt │ │ │ ├── H1140_zscore_5_sorted.txt │ │ │ ├── H1141_zscore_1.txt │ │ │ ├── H1141_zscore_1_sorted.txt │ │ │ ├── H1141_zscore_5.txt │ │ │ ├── H1141_zscore_5_sorted.txt │ │ │ ├── H1142_zscore_1.txt │ │ │ ├── H1142_zscore_1_sorted.txt │ │ │ ├── H1142_zscore_5.txt │ │ │ ├── H1142_zscore_5_sorted.txt │ │ │ ├── H1143_zscore_1.txt │ │ │ ├── H1143_zscore_1_sorted.txt │ │ │ ├── H1143_zscore_5.txt │ │ │ ├── H1143_zscore_5_sorted.txt │ │ │ ├── H1144_zscore_1.txt │ │ │ ├── H1144_zscore_1_sorted.txt │ │ │ ├── H1144_zscore_5.txt │ │ │ ├── H1144_zscore_5_sorted.txt │ │ │ ├── H1151_zscore_1.txt │ │ │ ├── H1151_zscore_1_sorted.txt │ │ │ ├── H1151_zscore_5.txt │ │ │ ├── H1151_zscore_5_sorted.txt │ │ │ ├── H1157_zscore_1.txt │ │ │ ├── H1157_zscore_1_sorted.txt │ │ │ ├── H1157_zscore_5.txt │ │ │ ├── H1157_zscore_5_sorted.txt │ │ │ ├── H1166_zscore_1.txt │ │ │ ├── H1166_zscore_1_sorted.txt │ │ │ ├── H1166_zscore_5.txt │ │ │ ├── H1166_zscore_5_sorted.txt │ │ │ ├── H1167_zscore_1.txt │ │ │ ├── H1167_zscore_1_sorted.txt │ │ │ ├── H1167_zscore_5.txt │ │ │ ├── H1167_zscore_5_sorted.txt │ │ │ ├── H1168_zscore_1.txt │ │ │ ├── H1168_zscore_1_sorted.txt │ │ │ ├── H1168_zscore_5.txt │ │ │ ├── H1168_zscore_5_sorted.txt │ │ │ ├── H1171_zscore_1.txt │ │ │ ├── H1171_zscore_1_sorted.txt │ │ │ ├── H1171_zscore_5.txt │ │ │ ├── H1171_zscore_5_sorted.txt │ │ │ ├── H1172_zscore_1.txt │ │ │ ├── H1172_zscore_1_sorted.txt │ │ │ ├── H1172_zscore_5.txt │ │ │ ├── H1172_zscore_5_sorted.txt │ │ │ ├── H1185_zscore_1.txt │ │ │ ├── H1185_zscore_1_sorted.txt │ │ │ ├── H1185_zscore_5.txt │ │ │ ├── H1185_zscore_5_sorted.txt │ │ │ ├── T1109_zscore_1.txt │ │ │ ├── T1109_zscore_1_sorted.txt │ │ │ ├── T1109_zscore_5.txt │ │ │ ├── T1109_zscore_5_sorted.txt │ │ │ ├── T1110_zscore_1.txt │ │ │ ├── T1110_zscore_1_sorted.txt │ │ │ ├── T1110_zscore_5.txt │ │ │ ├── T1110_zscore_5_sorted.txt │ │ │ ├── T1113_zscore_1.txt │ │ │ ├── T1113_zscore_1_sorted.txt │ │ │ ├── T1113_zscore_5.txt │ │ │ ├── T1113_zscore_5_sorted.txt │ │ │ ├── T1115_zscore_1.txt │ │ │ ├── T1115_zscore_1_sorted.txt │ │ │ ├── T1115_zscore_5.txt │ │ │ ├── T1115_zscore_5_sorted.txt │ │ │ ├── T1121_zscore_1.txt │ │ │ ├── T1121_zscore_1_sorted.txt │ │ │ ├── T1121_zscore_5.txt │ │ │ ├── T1121_zscore_5_sorted.txt │ │ │ ├── T1123_zscore_1.txt │ │ │ ├── T1123_zscore_1_sorted.txt │ │ │ ├── T1123_zscore_5.txt │ │ │ ├── T1123_zscore_5_sorted.txt │ │ │ ├── T1124_zscore_1.txt │ │ │ ├── T1124_zscore_1_sorted.txt │ │ │ ├── T1124_zscore_5.txt │ │ │ ├── T1124_zscore_5_sorted.txt │ │ │ ├── T1127_zscore_1.txt │ │ │ ├── T1127_zscore_1_sorted.txt │ │ │ ├── T1127_zscore_5.txt │ │ │ ├── T1127_zscore_5_sorted.txt │ │ │ ├── T1132_zscore_1.txt │ │ │ ├── T1132_zscore_1_sorted.txt │ │ │ ├── T1132_zscore_5.txt │ │ │ ├── T1132_zscore_5_sorted.txt │ │ │ ├── T1153_zscore_1.txt │ │ │ ├── T1153_zscore_1_sorted.txt │ │ │ ├── T1153_zscore_5.txt │ │ │ ├── T1153_zscore_5_sorted.txt │ │ │ ├── T1160_zscore_1.txt │ │ │ ├── T1160_zscore_1_sorted.txt │ │ │ ├── T1160_zscore_5.txt │ │ │ ├── T1160_zscore_5_sorted.txt │ │ │ ├── T1161_zscore_1.txt │ │ │ ├── T1161_zscore_1_sorted.txt │ │ │ ├── T1161_zscore_5.txt │ │ │ ├── T1161_zscore_5_sorted.txt │ │ │ ├── T1170_zscore_1.txt │ │ │ ├── T1170_zscore_1_sorted.txt │ │ │ ├── T1170_zscore_5.txt │ │ │ ├── T1170_zscore_5_sorted.txt │ │ │ ├── T1173_zscore_1.txt │ │ │ ├── T1173_zscore_1_sorted.txt │ │ │ ├── T1173_zscore_5.txt │ │ │ ├── T1173_zscore_5_sorted.txt │ │ │ ├── T1174_zscore_1.txt │ │ │ ├── T1174_zscore_1_sorted.txt │ │ │ ├── T1174_zscore_5.txt │ │ │ ├── T1174_zscore_5_sorted.txt │ │ │ ├── T1176_zscore_1.txt │ │ │ ├── T1176_zscore_1_sorted.txt │ │ │ ├── T1176_zscore_5.txt │ │ │ ├── T1176_zscore_5_sorted.txt │ │ │ ├── T1178_zscore_1.txt │ │ │ ├── T1178_zscore_1_sorted.txt │ │ │ ├── T1178_zscore_5.txt │ │ │ ├── T1178_zscore_5_sorted.txt │ │ │ ├── T1179_zscore_1.txt │ │ │ ├── T1179_zscore_1_sorted.txt │ │ │ ├── T1179_zscore_5.txt │ │ │ ├── T1179_zscore_5_sorted.txt │ │ │ ├── T1181_zscore_1.txt │ │ │ ├── T1181_zscore_1_sorted.txt │ │ │ ├── T1181_zscore_5.txt │ │ │ ├── T1181_zscore_5_sorted.txt │ │ │ ├── T1187_zscore_1.txt │ │ │ ├── T1187_zscore_1_sorted.txt │ │ │ ├── T1187_zscore_5.txt │ │ │ ├── T1187_zscore_5_sorted.txt │ │ │ ├── T1192_zscore_1.txt │ │ │ ├── T1192_zscore_1_sorted.txt │ │ │ ├── T1192_zscore_5.txt │ │ │ ├── T1192_zscore_5_sorted.txt │ │ │ ├── z_1.log │ │ │ ├── z_5.log │ │ │ ├── zscore_1.txt │ │ │ └── zscore_5.txt │ ├── foldseek_refine │ │ ├── refine_all.csv │ │ ├── refine_all_avg.csv │ │ ├── refine_inc_all.csv │ │ ├── refine_inc_avg.csv │ │ ├── refine_max.csv │ │ ├── refine_top1.csv │ │ └── scripts │ │ │ ├── compare_refine_score.py │ │ │ ├── copy_refine_models.py │ │ │ ├── filter_pdb_v2.py │ │ │ └── pdb_process.py │ ├── multicom_results │ │ ├── human │ │ │ ├── method_summary.csv │ │ │ └── target_results │ │ │ │ ├── H1106.results │ │ │ │ ├── H1111.results │ │ │ │ ├── H1114.results │ │ │ │ ├── H1129.results │ │ │ │ ├── H1134.results │ │ │ │ ├── H1135.results │ │ │ │ ├── H1137.results │ │ │ │ ├── H1140.results │ │ │ │ ├── H1141.results │ │ │ │ ├── H1142.results │ │ │ │ ├── H1143.results │ │ │ │ ├── H1144.results │ │ │ │ ├── H1151.results │ │ │ │ ├── H1157.results │ │ │ │ ├── H1166.results │ │ │ │ ├── H1167.results │ │ │ │ ├── H1168.results │ │ │ │ ├── T1109.results │ │ │ │ ├── T1110.results │ │ │ │ ├── T1113.results │ │ │ │ ├── T1121.results │ │ │ │ ├── T1123.results │ │ │ │ ├── T1124.results │ │ │ │ ├── T1127.results │ │ │ │ ├── T1132.results │ │ │ │ ├── T1153.results │ │ │ │ ├── T1160.results │ │ │ │ ├── T1161.results │ │ │ │ ├── T1170.results │ │ │ │ ├── T1173.results │ │ │ │ ├── T1174.results │ │ │ │ ├── T1176.results │ │ │ │ ├── T1178.results │ │ │ │ ├── T1179.results │ │ │ │ ├── T1181.results │ │ │ │ ├── T1187.results │ │ │ │ ├── avg_refine.results │ │ │ │ ├── default_af.results │ │ │ │ ├── default_comp.results │ │ │ │ ├── default_img.results │ │ │ │ ├── default_multimer.results │ │ │ │ ├── default_pdb.results │ │ │ │ ├── default_pdb70.results │ │ │ │ ├── default_struct.results │ │ │ │ ├── img_multimer.results │ │ │ │ ├── iter_1.results │ │ │ │ ├── iter_1_old.results │ │ │ │ ├── iter_1_ori.results │ │ │ │ ├── iter_2.results │ │ │ │ ├── iter_2_old.results │ │ │ │ ├── iter_2_ori.results │ │ │ │ ├── iter_3.results │ │ │ │ ├── iter_4.results │ │ │ │ ├── iter_5.results │ │ │ │ ├── lewis.results │ │ │ │ ├── multicom.results │ │ │ │ ├── multicom_human.results │ │ │ │ ├── pdb_iter_uniref_a3m.results │ │ │ │ ├── spec_af.results │ │ │ │ ├── spec_colab_iter.results │ │ │ │ ├── spec_comp.results │ │ │ │ ├── spec_iter_uniprot_sto.results │ │ │ │ ├── spec_iter_uniref_a3m.results │ │ │ │ ├── spec_iter_uniref_sto.results │ │ │ │ ├── spec_pdb.results │ │ │ │ ├── spec_pdb70.results │ │ │ │ ├── spec_struct.results │ │ │ │ ├── str_af.results │ │ │ │ ├── str_comp.results │ │ │ │ ├── str_iter_uniprot_sto.results │ │ │ │ ├── str_iter_uniref_a3m.results │ │ │ │ ├── str_iter_uniref_sto.results │ │ │ │ ├── str_pdb.results │ │ │ │ ├── str_pdb70.results │ │ │ │ ├── str_struct.results │ │ │ │ ├── uniclust_oxmatch_a3m.results │ │ │ │ ├── unidist_uniprot_img.results │ │ │ │ ├── unidist_uniprot_sto.results │ │ │ │ ├── unidist_uniref_a3m.results │ │ │ │ └── unidist_uniref_sto.results │ │ ├── scripts │ │ │ ├── batch_mmalign_out.py │ │ │ ├── batch_mmalign_out_single.py │ │ │ ├── cal_tmscore.py │ │ │ ├── cal_top1_avg.py │ │ │ ├── cif2pdb.py │ │ │ ├── compare_iter_models_with_default.py │ │ │ ├── compare_methods.py │ │ │ ├── compare_methods_with_elo_max.py │ │ │ ├── compare_server_models_with_elo.py │ │ │ ├── download_pdb_file.py │ │ │ ├── eva_casp_v2.pl │ │ │ ├── evaluate_QA.py │ │ │ ├── extract_pairwise_af_score.py │ │ │ ├── filter_pdb_v2.py │ │ │ ├── generate_weighted_average_score.py │ │ │ ├── get_all_score.py │ │ │ ├── get_best_score.py │ │ │ ├── pdb_process.py │ │ │ ├── pre2zhang.pl │ │ │ └── top1_avg.csv │ │ └── server │ │ │ ├── method_summary.csv │ │ │ └── target_results │ │ │ ├── H1106.results │ │ │ ├── H1111.results │ │ │ ├── H1114.results │ │ │ ├── H1129.results │ │ │ ├── H1134.results │ │ │ ├── H1135.results │ │ │ ├── H1137.results │ │ │ ├── H1140.results │ │ │ ├── H1141.results │ │ │ ├── H1142.results │ │ │ ├── H1143.results │ │ │ ├── H1144.results │ │ │ ├── H1151.results │ │ │ ├── H1157.results │ │ │ ├── H1166.results │ │ │ ├── H1167.results │ │ │ ├── H1168.results │ │ │ ├── T1109.results │ │ │ ├── T1110.results │ │ │ ├── T1113.results │ │ │ ├── T1121.results │ │ │ ├── T1123.results │ │ │ ├── T1124.results │ │ │ ├── T1127.results │ │ │ ├── T1132.results │ │ │ ├── T1153.results │ │ │ ├── T1160.results │ │ │ ├── T1161.results │ │ │ ├── T1170.results │ │ │ ├── T1173.results │ │ │ ├── T1174.results │ │ │ ├── T1176.results │ │ │ ├── T1178.results │ │ │ ├── T1179.results │ │ │ ├── T1181.results │ │ │ ├── T1187.results │ │ │ ├── deep.results │ │ │ ├── default_af.results │ │ │ ├── default_comp.results │ │ │ ├── default_img.results │ │ │ ├── default_multimer.results │ │ │ ├── default_pdb.results │ │ │ ├── default_pdb70.results │ │ │ ├── default_struct.results │ │ │ ├── img_multimer.results │ │ │ ├── iter_1.results │ │ │ ├── iter_1_old.results │ │ │ ├── iter_2.results │ │ │ ├── iter_2_old.results │ │ │ ├── iter_3.results │ │ │ ├── iter_4.results │ │ │ ├── iter_5.results │ │ │ ├── lewis.results │ │ │ ├── pdb_iter_uniref_a3m.results │ │ │ ├── qa.results │ │ │ ├── spec_af.results │ │ │ ├── spec_colab_iter.results │ │ │ ├── spec_comp.results │ │ │ ├── spec_iter_uniprot_sto.results │ │ │ ├── spec_iter_uniref_a3m.results │ │ │ ├── spec_iter_uniref_sto.results │ │ │ ├── spec_pdb.results │ │ │ ├── spec_pdb70.results │ │ │ ├── spec_struct.results │ │ │ ├── str_af.results │ │ │ ├── str_comp.results │ │ │ ├── str_iter_uniprot_sto.results │ │ │ ├── str_iter_uniref_sto.results │ │ │ ├── str_pdb.results │ │ │ ├── str_pdb70.results │ │ │ ├── str_struct.results │ │ │ ├── uniclust_oxmatch_a3m.results │ │ │ ├── unidist_uniprot_sto.results │ │ │ └── unidist_uniref_sto.results │ ├── multimer_QA │ │ ├── human_model_dataset_qa_scores │ │ │ ├── H1106 │ │ │ │ ├── H1106.csv │ │ │ │ ├── H1106QA1_1 │ │ │ │ ├── H1106QA21_1 │ │ │ │ ├── H1106QA22_1 │ │ │ │ ├── H1106QA23_1 │ │ │ │ ├── H1106QA24_1 │ │ │ │ ├── H1106QA25_1 │ │ │ │ ├── H1106QA26_1 │ │ │ │ ├── H1106QA27_1 │ │ │ │ ├── H1106QA28_1 │ │ │ │ ├── H1106QA29_1 │ │ │ │ ├── H1106QA2_1 │ │ │ │ ├── H1106QA3_1 │ │ │ │ ├── H1106QA41_1 │ │ │ │ ├── H1106QA42_1 │ │ │ │ ├── H1106QA4_1 │ │ │ │ ├── H1106QA51_1 │ │ │ │ ├── H1106QA52_1 │ │ │ │ ├── H1106QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1129 │ │ │ │ ├── H1129.csv │ │ │ │ ├── H1129QA1_1 │ │ │ │ ├── H1129QA21_1 │ │ │ │ ├── H1129QA22_1 │ │ │ │ ├── H1129QA23_1 │ │ │ │ ├── H1129QA24_1 │ │ │ │ ├── H1129QA25_1 │ │ │ │ ├── H1129QA26_1 │ │ │ │ ├── H1129QA27_1 │ │ │ │ ├── H1129QA28_1 │ │ │ │ ├── H1129QA29_1 │ │ │ │ ├── H1129QA2_1 │ │ │ │ ├── H1129QA3_1 │ │ │ │ ├── H1129QA41_1 │ │ │ │ ├── H1129QA42_1 │ │ │ │ ├── H1129QA4_1 │ │ │ │ ├── H1129QA51_1 │ │ │ │ ├── H1129QA52_1 │ │ │ │ ├── H1129QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1134 │ │ │ │ ├── H1134.csv │ │ │ │ ├── H1134QA1_1 │ │ │ │ ├── H1134QA21_1 │ │ │ │ ├── H1134QA22_1 │ │ │ │ ├── H1134QA23_1 │ │ │ │ ├── H1134QA24_1 │ │ │ │ ├── H1134QA25_1 │ │ │ │ ├── H1134QA26_1 │ │ │ │ ├── H1134QA27_1 │ │ │ │ ├── H1134QA28_1 │ │ │ │ ├── H1134QA29_1 │ │ │ │ ├── H1134QA2_1 │ │ │ │ ├── H1134QA3_1 │ │ │ │ ├── H1134QA41_1 │ │ │ │ ├── H1134QA42_1 │ │ │ │ ├── H1134QA4_1 │ │ │ │ ├── H1134QA51_1 │ │ │ │ ├── H1134QA52_1 │ │ │ │ ├── H1134QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1140 │ │ │ │ ├── H1140.csv │ │ │ │ ├── H1140QA1_1 │ │ │ │ ├── H1140QA21_1 │ │ │ │ ├── H1140QA22_1 │ │ │ │ ├── H1140QA23_1 │ │ │ │ ├── H1140QA24_1 │ │ │ │ ├── H1140QA25_1 │ │ │ │ ├── H1140QA26_1 │ │ │ │ ├── H1140QA27_1 │ │ │ │ ├── H1140QA28_1 │ │ │ │ ├── H1140QA29_1 │ │ │ │ ├── H1140QA2_1 │ │ │ │ ├── H1140QA3_1 │ │ │ │ ├── H1140QA41_1 │ │ │ │ ├── H1140QA42_1 │ │ │ │ ├── H1140QA4_1 │ │ │ │ ├── H1140QA51_1 │ │ │ │ ├── H1140QA52_1 │ │ │ │ ├── H1140QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1141 │ │ │ │ ├── H1141.csv │ │ │ │ ├── H1141QA1_1 │ │ │ │ ├── H1141QA21_1 │ │ │ │ ├── H1141QA22_1 │ │ │ │ ├── H1141QA23_1 │ │ │ │ ├── H1141QA24_1 │ │ │ │ ├── H1141QA25_1 │ │ │ │ ├── H1141QA26_1 │ │ │ │ ├── H1141QA27_1 │ │ │ │ ├── H1141QA28_1 │ │ │ │ ├── H1141QA29_1 │ │ │ │ ├── H1141QA2_1 │ │ │ │ ├── H1141QA3_1 │ │ │ │ ├── H1141QA41_1 │ │ │ │ ├── H1141QA42_1 │ │ │ │ ├── H1141QA4_1 │ │ │ │ ├── H1141QA51_1 │ │ │ │ ├── H1141QA52_1 │ │ │ │ ├── H1141QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1142 │ │ │ │ ├── H1142.csv │ │ │ │ ├── H1142QA1_1 │ │ │ │ ├── H1142QA21_1 │ │ │ │ ├── H1142QA22_1 │ │ │ │ ├── H1142QA23_1 │ │ │ │ ├── H1142QA24_1 │ │ │ │ ├── H1142QA25_1 │ │ │ │ ├── H1142QA26_1 │ │ │ │ ├── H1142QA27_1 │ │ │ │ ├── H1142QA28_1 │ │ │ │ ├── H1142QA29_1 │ │ │ │ ├── H1142QA2_1 │ │ │ │ ├── H1142QA3_1 │ │ │ │ ├── H1142QA41_1 │ │ │ │ ├── H1142QA42_1 │ │ │ │ ├── H1142QA4_1 │ │ │ │ ├── H1142QA51_1 │ │ │ │ ├── H1142QA52_1 │ │ │ │ ├── H1142QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1143 │ │ │ │ ├── H1143.csv │ │ │ │ ├── H1143QA1_1 │ │ │ │ ├── H1143QA21_1 │ │ │ │ ├── H1143QA22_1 │ │ │ │ ├── H1143QA23_1 │ │ │ │ ├── H1143QA24_1 │ │ │ │ ├── H1143QA25_1 │ │ │ │ ├── H1143QA26_1 │ │ │ │ ├── H1143QA27_1 │ │ │ │ ├── H1143QA28_1 │ │ │ │ ├── H1143QA29_1 │ │ │ │ ├── H1143QA2_1 │ │ │ │ ├── H1143QA3_1 │ │ │ │ ├── H1143QA41_1 │ │ │ │ ├── H1143QA42_1 │ │ │ │ ├── H1143QA4_1 │ │ │ │ ├── H1143QA51_1 │ │ │ │ ├── H1143QA52_1 │ │ │ │ ├── H1143QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1144 │ │ │ │ ├── H1144.csv │ │ │ │ ├── H1144QA1_1 │ │ │ │ ├── H1144QA21_1 │ │ │ │ ├── H1144QA22_1 │ │ │ │ ├── H1144QA23_1 │ │ │ │ ├── H1144QA24_1 │ │ │ │ ├── H1144QA25_1 │ │ │ │ ├── H1144QA26_1 │ │ │ │ ├── H1144QA27_1 │ │ │ │ ├── H1144QA28_1 │ │ │ │ ├── H1144QA29_1 │ │ │ │ ├── H1144QA2_1 │ │ │ │ ├── H1144QA3_1 │ │ │ │ ├── H1144QA41_1 │ │ │ │ ├── H1144QA42_1 │ │ │ │ ├── H1144QA4_1 │ │ │ │ ├── H1144QA51_1 │ │ │ │ ├── H1144QA52_1 │ │ │ │ ├── H1144QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1151 │ │ │ │ ├── H1151.csv │ │ │ │ ├── H1151QA1_1 │ │ │ │ ├── H1151QA21_1 │ │ │ │ ├── H1151QA22_1 │ │ │ │ ├── H1151QA23_1 │ │ │ │ ├── H1151QA24_1 │ │ │ │ ├── H1151QA25_1 │ │ │ │ ├── H1151QA26_1 │ │ │ │ ├── H1151QA27_1 │ │ │ │ ├── H1151QA28_1 │ │ │ │ ├── H1151QA29_1 │ │ │ │ ├── H1151QA2_1 │ │ │ │ ├── H1151QA3_1 │ │ │ │ ├── H1151QA41_1 │ │ │ │ ├── H1151QA42_1 │ │ │ │ ├── H1151QA4_1 │ │ │ │ ├── H1151QA51_1 │ │ │ │ ├── H1151QA52_1 │ │ │ │ ├── H1151QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1157 │ │ │ │ ├── H1157.csv │ │ │ │ ├── H1157QA1_1 │ │ │ │ ├── H1157QA21_1 │ │ │ │ ├── H1157QA22_1 │ │ │ │ ├── H1157QA23_1 │ │ │ │ ├── H1157QA24_1 │ │ │ │ ├── H1157QA25_1 │ │ │ │ ├── H1157QA26_1 │ │ │ │ ├── H1157QA27_1 │ │ │ │ ├── H1157QA28_1 │ │ │ │ ├── H1157QA29_1 │ │ │ │ ├── H1157QA2_1 │ │ │ │ ├── H1157QA3_1 │ │ │ │ ├── H1157QA41_1 │ │ │ │ ├── H1157QA42_1 │ │ │ │ ├── H1157QA4_1 │ │ │ │ ├── H1157QA51_1 │ │ │ │ ├── H1157QA52_1 │ │ │ │ ├── H1157QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1166 │ │ │ │ ├── H1166.csv │ │ │ │ ├── H1166QA1_1 │ │ │ │ ├── H1166QA21_1 │ │ │ │ ├── H1166QA22_1 │ │ │ │ ├── H1166QA23_1 │ │ │ │ ├── H1166QA24_1 │ │ │ │ ├── H1166QA25_1 │ │ │ │ ├── H1166QA26_1 │ │ │ │ ├── H1166QA27_1 │ │ │ │ ├── H1166QA28_1 │ │ │ │ ├── H1166QA29_1 │ │ │ │ ├── H1166QA2_1 │ │ │ │ ├── H1166QA3_1 │ │ │ │ ├── H1166QA41_1 │ │ │ │ ├── H1166QA42_1 │ │ │ │ ├── H1166QA4_1 │ │ │ │ ├── H1166QA51_1 │ │ │ │ ├── H1166QA52_1 │ │ │ │ ├── H1166QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1167 │ │ │ │ ├── H1167.csv │ │ │ │ ├── H1167QA1_1 │ │ │ │ ├── H1167QA21_1 │ │ │ │ ├── H1167QA22_1 │ │ │ │ ├── H1167QA23_1 │ │ │ │ ├── H1167QA24_1 │ │ │ │ ├── H1167QA25_1 │ │ │ │ ├── H1167QA26_1 │ │ │ │ ├── H1167QA27_1 │ │ │ │ ├── H1167QA28_1 │ │ │ │ ├── H1167QA29_1 │ │ │ │ ├── H1167QA2_1 │ │ │ │ ├── H1167QA3_1 │ │ │ │ ├── H1167QA41_1 │ │ │ │ ├── H1167QA42_1 │ │ │ │ ├── H1167QA4_1 │ │ │ │ ├── H1167QA51_1 │ │ │ │ ├── H1167QA52_1 │ │ │ │ ├── H1167QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1168 │ │ │ │ ├── H1168.csv │ │ │ │ ├── H1168QA1_1 │ │ │ │ ├── H1168QA21_1 │ │ │ │ ├── H1168QA22_1 │ │ │ │ ├── H1168QA23_1 │ │ │ │ ├── H1168QA24_1 │ │ │ │ ├── H1168QA25_1 │ │ │ │ ├── H1168QA26_1 │ │ │ │ ├── H1168QA27_1 │ │ │ │ ├── H1168QA28_1 │ │ │ │ ├── H1168QA29_1 │ │ │ │ ├── H1168QA2_1 │ │ │ │ ├── H1168QA3_1 │ │ │ │ ├── H1168QA41_1 │ │ │ │ ├── H1168QA42_1 │ │ │ │ ├── H1168QA4_1 │ │ │ │ ├── H1168QA51_1 │ │ │ │ ├── H1168QA52_1 │ │ │ │ ├── H1168QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1109 │ │ │ │ ├── T1109.csv │ │ │ │ ├── T1109QA1_1 │ │ │ │ ├── T1109QA21_1 │ │ │ │ ├── T1109QA22_1 │ │ │ │ ├── T1109QA23_1 │ │ │ │ ├── T1109QA24_1 │ │ │ │ ├── T1109QA25_1 │ │ │ │ ├── T1109QA26_1 │ │ │ │ ├── T1109QA27_1 │ │ │ │ ├── T1109QA28_1 │ │ │ │ ├── T1109QA29_1 │ │ │ │ ├── T1109QA2_1 │ │ │ │ ├── T1109QA3_1 │ │ │ │ ├── T1109QA41_1 │ │ │ │ ├── T1109QA42_1 │ │ │ │ ├── T1109QA4_1 │ │ │ │ ├── T1109QA51_1 │ │ │ │ ├── T1109QA52_1 │ │ │ │ ├── T1109QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1110 │ │ │ │ ├── T1110.csv │ │ │ │ ├── T1110QA1_1 │ │ │ │ ├── T1110QA21_1 │ │ │ │ ├── T1110QA22_1 │ │ │ │ ├── T1110QA23_1 │ │ │ │ ├── T1110QA24_1 │ │ │ │ ├── T1110QA25_1 │ │ │ │ ├── T1110QA26_1 │ │ │ │ ├── T1110QA27_1 │ │ │ │ ├── T1110QA28_1 │ │ │ │ ├── T1110QA29_1 │ │ │ │ ├── T1110QA2_1 │ │ │ │ ├── T1110QA3_1 │ │ │ │ ├── T1110QA41_1 │ │ │ │ ├── T1110QA42_1 │ │ │ │ ├── T1110QA4_1 │ │ │ │ ├── T1110QA51_1 │ │ │ │ ├── T1110QA52_1 │ │ │ │ ├── T1110QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1113 │ │ │ │ ├── T1113.csv │ │ │ │ ├── T1113QA1_1 │ │ │ │ ├── T1113QA21_1 │ │ │ │ ├── T1113QA22_1 │ │ │ │ ├── T1113QA23_1 │ │ │ │ ├── T1113QA24_1 │ │ │ │ ├── T1113QA25_1 │ │ │ │ ├── T1113QA26_1 │ │ │ │ ├── T1113QA27_1 │ │ │ │ ├── T1113QA28_1 │ │ │ │ ├── T1113QA29_1 │ │ │ │ ├── T1113QA2_1 │ │ │ │ ├── T1113QA3_1 │ │ │ │ ├── T1113QA41_1 │ │ │ │ ├── T1113QA42_1 │ │ │ │ ├── T1113QA4_1 │ │ │ │ ├── T1113QA51_1 │ │ │ │ ├── T1113QA52_1 │ │ │ │ ├── T1113QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1121 │ │ │ │ ├── T1121.csv │ │ │ │ ├── T1121QA1_1 │ │ │ │ ├── T1121QA21_1 │ │ │ │ ├── T1121QA22_1 │ │ │ │ ├── T1121QA23_1 │ │ │ │ ├── T1121QA24_1 │ │ │ │ ├── T1121QA25_1 │ │ │ │ ├── T1121QA26_1 │ │ │ │ ├── T1121QA27_1 │ │ │ │ ├── T1121QA28_1 │ │ │ │ ├── T1121QA29_1 │ │ │ │ ├── T1121QA2_1 │ │ │ │ ├── T1121QA3_1 │ │ │ │ ├── T1121QA41_1 │ │ │ │ ├── T1121QA42_1 │ │ │ │ ├── T1121QA4_1 │ │ │ │ ├── T1121QA51_1 │ │ │ │ ├── T1121QA52_1 │ │ │ │ ├── T1121QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1123 │ │ │ │ ├── T1123.csv │ │ │ │ ├── T1123QA1_1 │ │ │ │ ├── T1123QA21_1 │ │ │ │ ├── T1123QA22_1 │ │ │ │ ├── T1123QA23_1 │ │ │ │ ├── T1123QA24_1 │ │ │ │ ├── T1123QA25_1 │ │ │ │ ├── T1123QA26_1 │ │ │ │ ├── T1123QA27_1 │ │ │ │ ├── T1123QA28_1 │ │ │ │ ├── T1123QA29_1 │ │ │ │ ├── T1123QA2_1 │ │ │ │ ├── T1123QA3_1 │ │ │ │ ├── T1123QA41_1 │ │ │ │ ├── T1123QA42_1 │ │ │ │ ├── T1123QA4_1 │ │ │ │ ├── T1123QA51_1 │ │ │ │ ├── T1123QA52_1 │ │ │ │ ├── T1123QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1124 │ │ │ │ ├── T1124.csv │ │ │ │ ├── T1124QA1_1 │ │ │ │ ├── T1124QA21_1 │ │ │ │ ├── T1124QA22_1 │ │ │ │ ├── T1124QA23_1 │ │ │ │ ├── T1124QA24_1 │ │ │ │ ├── T1124QA25_1 │ │ │ │ ├── T1124QA26_1 │ │ │ │ ├── T1124QA27_1 │ │ │ │ ├── T1124QA28_1 │ │ │ │ ├── T1124QA29_1 │ │ │ │ ├── T1124QA2_1 │ │ │ │ ├── T1124QA3_1 │ │ │ │ ├── T1124QA41_1 │ │ │ │ ├── T1124QA42_1 │ │ │ │ ├── T1124QA4_1 │ │ │ │ ├── T1124QA51_1 │ │ │ │ ├── T1124QA52_1 │ │ │ │ ├── T1124QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1127 │ │ │ │ ├── T1127.csv │ │ │ │ ├── T1127QA1_1 │ │ │ │ ├── T1127QA21_1 │ │ │ │ ├── T1127QA22_1 │ │ │ │ ├── T1127QA23_1 │ │ │ │ ├── T1127QA24_1 │ │ │ │ ├── T1127QA25_1 │ │ │ │ ├── T1127QA26_1 │ │ │ │ ├── T1127QA27_1 │ │ │ │ ├── T1127QA28_1 │ │ │ │ ├── T1127QA29_1 │ │ │ │ ├── T1127QA2_1 │ │ │ │ ├── T1127QA3_1 │ │ │ │ ├── T1127QA41_1 │ │ │ │ ├── T1127QA42_1 │ │ │ │ ├── T1127QA4_1 │ │ │ │ ├── T1127QA51_1 │ │ │ │ ├── T1127QA52_1 │ │ │ │ ├── T1127QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1132 │ │ │ │ ├── T1132.csv │ │ │ │ ├── T1132QA1_1 │ │ │ │ ├── T1132QA21_1 │ │ │ │ ├── T1132QA22_1 │ │ │ │ ├── T1132QA23_1 │ │ │ │ ├── T1132QA24_1 │ │ │ │ ├── T1132QA25_1 │ │ │ │ ├── T1132QA26_1 │ │ │ │ ├── T1132QA27_1 │ │ │ │ ├── T1132QA28_1 │ │ │ │ ├── T1132QA29_1 │ │ │ │ ├── T1132QA2_1 │ │ │ │ ├── T1132QA3_1 │ │ │ │ ├── T1132QA41_1 │ │ │ │ ├── T1132QA42_1 │ │ │ │ ├── T1132QA4_1 │ │ │ │ ├── T1132QA51_1 │ │ │ │ ├── T1132QA52_1 │ │ │ │ ├── T1132QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1153 │ │ │ │ ├── T1153.csv │ │ │ │ ├── T1153QA1_1 │ │ │ │ ├── T1153QA21_1 │ │ │ │ ├── T1153QA22_1 │ │ │ │ ├── T1153QA23_1 │ │ │ │ ├── T1153QA24_1 │ │ │ │ ├── T1153QA25_1 │ │ │ │ ├── T1153QA26_1 │ │ │ │ ├── T1153QA27_1 │ │ │ │ ├── T1153QA28_1 │ │ │ │ ├── T1153QA29_1 │ │ │ │ ├── T1153QA2_1 │ │ │ │ ├── T1153QA3_1 │ │ │ │ ├── T1153QA41_1 │ │ │ │ ├── T1153QA42_1 │ │ │ │ ├── T1153QA4_1 │ │ │ │ ├── T1153QA51_1 │ │ │ │ ├── T1153QA52_1 │ │ │ │ ├── T1153QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1160 │ │ │ │ ├── T1160.csv │ │ │ │ ├── T1160QA1_1 │ │ │ │ ├── T1160QA21_1 │ │ │ │ ├── T1160QA22_1 │ │ │ │ ├── T1160QA23_1 │ │ │ │ ├── T1160QA24_1 │ │ │ │ ├── T1160QA25_1 │ │ │ │ ├── T1160QA26_1 │ │ │ │ ├── T1160QA27_1 │ │ │ │ ├── T1160QA28_1 │ │ │ │ ├── T1160QA29_1 │ │ │ │ ├── T1160QA2_1 │ │ │ │ ├── T1160QA3_1 │ │ │ │ ├── T1160QA41_1 │ │ │ │ ├── T1160QA42_1 │ │ │ │ ├── T1160QA4_1 │ │ │ │ ├── T1160QA51_1 │ │ │ │ ├── T1160QA52_1 │ │ │ │ ├── T1160QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1161 │ │ │ │ ├── T1161.csv │ │ │ │ ├── T1161QA1_1 │ │ │ │ ├── T1161QA21_1 │ │ │ │ ├── T1161QA22_1 │ │ │ │ ├── T1161QA23_1 │ │ │ │ ├── T1161QA24_1 │ │ │ │ ├── T1161QA25_1 │ │ │ │ ├── T1161QA26_1 │ │ │ │ ├── T1161QA27_1 │ │ │ │ ├── T1161QA28_1 │ │ │ │ ├── T1161QA29_1 │ │ │ │ ├── T1161QA2_1 │ │ │ │ ├── T1161QA3_1 │ │ │ │ ├── T1161QA41_1 │ │ │ │ ├── T1161QA42_1 │ │ │ │ ├── T1161QA4_1 │ │ │ │ ├── T1161QA51_1 │ │ │ │ ├── T1161QA52_1 │ │ │ │ ├── T1161QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1170 │ │ │ │ ├── T1170.csv │ │ │ │ ├── T1170QA1_1 │ │ │ │ ├── T1170QA21_1 │ │ │ │ ├── T1170QA22_1 │ │ │ │ ├── T1170QA23_1 │ │ │ │ ├── T1170QA24_1 │ │ │ │ ├── T1170QA25_1 │ │ │ │ ├── T1170QA26_1 │ │ │ │ ├── T1170QA27_1 │ │ │ │ ├── T1170QA28_1 │ │ │ │ ├── T1170QA29_1 │ │ │ │ ├── T1170QA2_1 │ │ │ │ ├── T1170QA3_1 │ │ │ │ ├── T1170QA41_1 │ │ │ │ ├── T1170QA42_1 │ │ │ │ ├── T1170QA4_1 │ │ │ │ ├── T1170QA51_1 │ │ │ │ ├── T1170QA52_1 │ │ │ │ ├── T1170QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1173 │ │ │ │ ├── T1173.csv │ │ │ │ ├── T1173QA1_1 │ │ │ │ ├── T1173QA21_1 │ │ │ │ ├── T1173QA22_1 │ │ │ │ ├── T1173QA23_1 │ │ │ │ ├── T1173QA24_1 │ │ │ │ ├── T1173QA25_1 │ │ │ │ ├── T1173QA26_1 │ │ │ │ ├── T1173QA27_1 │ │ │ │ ├── T1173QA28_1 │ │ │ │ ├── T1173QA29_1 │ │ │ │ ├── T1173QA2_1 │ │ │ │ ├── T1173QA3_1 │ │ │ │ ├── T1173QA41_1 │ │ │ │ ├── T1173QA42_1 │ │ │ │ ├── T1173QA4_1 │ │ │ │ ├── T1173QA51_1 │ │ │ │ ├── T1173QA52_1 │ │ │ │ ├── T1173QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1174 │ │ │ │ ├── T1174.csv │ │ │ │ ├── T1174QA1_1 │ │ │ │ ├── T1174QA21_1 │ │ │ │ ├── T1174QA22_1 │ │ │ │ ├── T1174QA23_1 │ │ │ │ ├── T1174QA24_1 │ │ │ │ ├── T1174QA25_1 │ │ │ │ ├── T1174QA26_1 │ │ │ │ ├── T1174QA27_1 │ │ │ │ ├── T1174QA28_1 │ │ │ │ ├── T1174QA29_1 │ │ │ │ ├── T1174QA2_1 │ │ │ │ ├── T1174QA3_1 │ │ │ │ ├── T1174QA41_1 │ │ │ │ ├── T1174QA42_1 │ │ │ │ ├── T1174QA4_1 │ │ │ │ ├── T1174QA51_1 │ │ │ │ ├── T1174QA52_1 │ │ │ │ ├── T1174QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1178 │ │ │ │ ├── T1178.csv │ │ │ │ ├── T1178QA1_1 │ │ │ │ ├── T1178QA21_1 │ │ │ │ ├── T1178QA22_1 │ │ │ │ ├── T1178QA23_1 │ │ │ │ ├── T1178QA24_1 │ │ │ │ ├── T1178QA25_1 │ │ │ │ ├── T1178QA26_1 │ │ │ │ ├── T1178QA27_1 │ │ │ │ ├── T1178QA28_1 │ │ │ │ ├── T1178QA29_1 │ │ │ │ ├── T1178QA2_1 │ │ │ │ ├── T1178QA3_1 │ │ │ │ ├── T1178QA41_1 │ │ │ │ ├── T1178QA42_1 │ │ │ │ ├── T1178QA4_1 │ │ │ │ ├── T1178QA51_1 │ │ │ │ ├── T1178QA52_1 │ │ │ │ ├── T1178QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1179 │ │ │ │ ├── T1179.csv │ │ │ │ ├── T1179QA1_1 │ │ │ │ ├── T1179QA21_1 │ │ │ │ ├── T1179QA22_1 │ │ │ │ ├── T1179QA23_1 │ │ │ │ ├── T1179QA24_1 │ │ │ │ ├── T1179QA25_1 │ │ │ │ ├── T1179QA26_1 │ │ │ │ ├── T1179QA27_1 │ │ │ │ ├── T1179QA28_1 │ │ │ │ ├── T1179QA29_1 │ │ │ │ ├── T1179QA2_1 │ │ │ │ ├── T1179QA3_1 │ │ │ │ ├── T1179QA41_1 │ │ │ │ ├── T1179QA42_1 │ │ │ │ ├── T1179QA4_1 │ │ │ │ ├── T1179QA51_1 │ │ │ │ ├── T1179QA52_1 │ │ │ │ ├── T1179QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1181 │ │ │ │ ├── T1181.csv │ │ │ │ ├── T1181QA1_1 │ │ │ │ ├── T1181QA21_1 │ │ │ │ ├── T1181QA22_1 │ │ │ │ ├── T1181QA23_1 │ │ │ │ ├── T1181QA24_1 │ │ │ │ ├── T1181QA25_1 │ │ │ │ ├── T1181QA26_1 │ │ │ │ ├── T1181QA27_1 │ │ │ │ ├── T1181QA28_1 │ │ │ │ ├── T1181QA29_1 │ │ │ │ ├── T1181QA2_1 │ │ │ │ ├── T1181QA3_1 │ │ │ │ ├── T1181QA41_1 │ │ │ │ ├── T1181QA42_1 │ │ │ │ ├── T1181QA4_1 │ │ │ │ ├── T1181QA51_1 │ │ │ │ ├── T1181QA52_1 │ │ │ │ ├── T1181QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ └── T1187 │ │ │ │ ├── T1187.csv │ │ │ │ ├── T1187QA1_1 │ │ │ │ ├── T1187QA21_1 │ │ │ │ ├── T1187QA22_1 │ │ │ │ ├── T1187QA23_1 │ │ │ │ ├── T1187QA24_1 │ │ │ │ ├── T1187QA25_1 │ │ │ │ ├── T1187QA26_1 │ │ │ │ ├── T1187QA27_1 │ │ │ │ ├── T1187QA28_1 │ │ │ │ ├── T1187QA29_1 │ │ │ │ ├── T1187QA2_1 │ │ │ │ ├── T1187QA3_1 │ │ │ │ ├── T1187QA41_1 │ │ │ │ ├── T1187QA42_1 │ │ │ │ ├── T1187QA4_1 │ │ │ │ ├── T1187QA51_1 │ │ │ │ ├── T1187QA52_1 │ │ │ │ ├── T1187QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ ├── human_qa.csv │ │ ├── scripts │ │ │ ├── evaluate_QA.py │ │ │ ├── generate_weighted_average_score.py │ │ │ └── mmalign_pairwise.py │ │ ├── server_model_dataset_qa_scores │ │ │ ├── H1106 │ │ │ │ ├── H1106.csv │ │ │ │ ├── H1106QA1_1 │ │ │ │ ├── H1106QA21_1 │ │ │ │ ├── H1106QA22_1 │ │ │ │ ├── H1106QA23_1 │ │ │ │ ├── H1106QA24_1 │ │ │ │ ├── H1106QA25_1 │ │ │ │ ├── H1106QA26_1 │ │ │ │ ├── H1106QA27_1 │ │ │ │ ├── H1106QA28_1 │ │ │ │ ├── H1106QA29_1 │ │ │ │ ├── H1106QA2_1 │ │ │ │ ├── H1106QA3_1 │ │ │ │ ├── H1106QA41_1 │ │ │ │ ├── H1106QA42_1 │ │ │ │ ├── H1106QA4_1 │ │ │ │ ├── H1106QA51_1 │ │ │ │ ├── H1106QA52_1 │ │ │ │ ├── H1106QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1129 │ │ │ │ ├── H1129.csv │ │ │ │ ├── H1129QA1_1 │ │ │ │ ├── H1129QA21_1 │ │ │ │ ├── H1129QA22_1 │ │ │ │ ├── H1129QA23_1 │ │ │ │ ├── H1129QA24_1 │ │ │ │ ├── H1129QA25_1 │ │ │ │ ├── H1129QA26_1 │ │ │ │ ├── H1129QA27_1 │ │ │ │ ├── H1129QA28_1 │ │ │ │ ├── H1129QA29_1 │ │ │ │ ├── H1129QA2_1 │ │ │ │ ├── H1129QA3_1 │ │ │ │ ├── H1129QA41_1 │ │ │ │ ├── H1129QA42_1 │ │ │ │ ├── H1129QA4_1 │ │ │ │ ├── H1129QA51_1 │ │ │ │ ├── H1129QA52_1 │ │ │ │ ├── H1129QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1134 │ │ │ │ ├── H1134.csv │ │ │ │ ├── H1134QA1_1 │ │ │ │ ├── H1134QA21_1 │ │ │ │ ├── H1134QA22_1 │ │ │ │ ├── H1134QA23_1 │ │ │ │ ├── H1134QA24_1 │ │ │ │ ├── H1134QA25_1 │ │ │ │ ├── H1134QA26_1 │ │ │ │ ├── H1134QA27_1 │ │ │ │ ├── H1134QA28_1 │ │ │ │ ├── H1134QA29_1 │ │ │ │ ├── H1134QA2_1 │ │ │ │ ├── H1134QA3_1 │ │ │ │ ├── H1134QA41_1 │ │ │ │ ├── H1134QA42_1 │ │ │ │ ├── H1134QA4_1 │ │ │ │ ├── H1134QA51_1 │ │ │ │ ├── H1134QA52_1 │ │ │ │ ├── H1134QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1140 │ │ │ │ ├── H1140.csv │ │ │ │ ├── H1140QA1_1 │ │ │ │ ├── H1140QA21_1 │ │ │ │ ├── H1140QA22_1 │ │ │ │ ├── H1140QA23_1 │ │ │ │ ├── H1140QA24_1 │ │ │ │ ├── H1140QA25_1 │ │ │ │ ├── H1140QA26_1 │ │ │ │ ├── H1140QA27_1 │ │ │ │ ├── H1140QA28_1 │ │ │ │ ├── H1140QA29_1 │ │ │ │ ├── H1140QA2_1 │ │ │ │ ├── H1140QA3_1 │ │ │ │ ├── H1140QA41_1 │ │ │ │ ├── H1140QA42_1 │ │ │ │ ├── H1140QA4_1 │ │ │ │ ├── H1140QA51_1 │ │ │ │ ├── H1140QA52_1 │ │ │ │ ├── H1140QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1141 │ │ │ │ ├── H1141.csv │ │ │ │ ├── H1141QA1_1 │ │ │ │ ├── H1141QA21_1 │ │ │ │ ├── H1141QA22_1 │ │ │ │ ├── H1141QA23_1 │ │ │ │ ├── H1141QA24_1 │ │ │ │ ├── H1141QA25_1 │ │ │ │ ├── H1141QA26_1 │ │ │ │ ├── H1141QA27_1 │ │ │ │ ├── H1141QA28_1 │ │ │ │ ├── H1141QA29_1 │ │ │ │ ├── H1141QA2_1 │ │ │ │ ├── H1141QA3_1 │ │ │ │ ├── H1141QA41_1 │ │ │ │ ├── H1141QA42_1 │ │ │ │ ├── H1141QA4_1 │ │ │ │ ├── H1141QA51_1 │ │ │ │ ├── H1141QA52_1 │ │ │ │ ├── H1141QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1142 │ │ │ │ ├── H1142.csv │ │ │ │ ├── H1142QA1_1 │ │ │ │ ├── H1142QA21_1 │ │ │ │ ├── H1142QA22_1 │ │ │ │ ├── H1142QA23_1 │ │ │ │ ├── H1142QA24_1 │ │ │ │ ├── H1142QA25_1 │ │ │ │ ├── H1142QA26_1 │ │ │ │ ├── H1142QA27_1 │ │ │ │ ├── H1142QA28_1 │ │ │ │ ├── H1142QA29_1 │ │ │ │ ├── H1142QA2_1 │ │ │ │ ├── H1142QA3_1 │ │ │ │ ├── H1142QA41_1 │ │ │ │ ├── H1142QA42_1 │ │ │ │ ├── H1142QA4_1 │ │ │ │ ├── H1142QA51_1 │ │ │ │ ├── H1142QA52_1 │ │ │ │ ├── H1142QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1143 │ │ │ │ ├── H1143.csv │ │ │ │ ├── H1143QA1_1 │ │ │ │ ├── H1143QA21_1 │ │ │ │ ├── H1143QA22_1 │ │ │ │ ├── H1143QA23_1 │ │ │ │ ├── H1143QA24_1 │ │ │ │ ├── H1143QA25_1 │ │ │ │ ├── H1143QA26_1 │ │ │ │ ├── H1143QA27_1 │ │ │ │ ├── H1143QA28_1 │ │ │ │ ├── H1143QA29_1 │ │ │ │ ├── H1143QA2_1 │ │ │ │ ├── H1143QA3_1 │ │ │ │ ├── H1143QA41_1 │ │ │ │ ├── H1143QA42_1 │ │ │ │ ├── H1143QA4_1 │ │ │ │ ├── H1143QA51_1 │ │ │ │ ├── H1143QA52_1 │ │ │ │ ├── H1143QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1144 │ │ │ │ ├── H1144.csv │ │ │ │ ├── H1144QA1_1 │ │ │ │ ├── H1144QA21_1 │ │ │ │ ├── H1144QA22_1 │ │ │ │ ├── H1144QA23_1 │ │ │ │ ├── H1144QA24_1 │ │ │ │ ├── H1144QA25_1 │ │ │ │ ├── H1144QA26_1 │ │ │ │ ├── H1144QA27_1 │ │ │ │ ├── H1144QA28_1 │ │ │ │ ├── H1144QA29_1 │ │ │ │ ├── H1144QA2_1 │ │ │ │ ├── H1144QA3_1 │ │ │ │ ├── H1144QA41_1 │ │ │ │ ├── H1144QA42_1 │ │ │ │ ├── H1144QA4_1 │ │ │ │ ├── H1144QA51_1 │ │ │ │ ├── H1144QA52_1 │ │ │ │ ├── H1144QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1151 │ │ │ │ ├── H1151.csv │ │ │ │ ├── H1151QA1_1 │ │ │ │ ├── H1151QA21_1 │ │ │ │ ├── H1151QA22_1 │ │ │ │ ├── H1151QA23_1 │ │ │ │ ├── H1151QA24_1 │ │ │ │ ├── H1151QA25_1 │ │ │ │ ├── H1151QA26_1 │ │ │ │ ├── H1151QA27_1 │ │ │ │ ├── H1151QA28_1 │ │ │ │ ├── H1151QA29_1 │ │ │ │ ├── H1151QA2_1 │ │ │ │ ├── H1151QA3_1 │ │ │ │ ├── H1151QA41_1 │ │ │ │ ├── H1151QA42_1 │ │ │ │ ├── H1151QA4_1 │ │ │ │ ├── H1151QA51_1 │ │ │ │ ├── H1151QA52_1 │ │ │ │ ├── H1151QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1157 │ │ │ │ ├── H1157.csv │ │ │ │ ├── H1157QA1_1 │ │ │ │ ├── H1157QA21_1 │ │ │ │ ├── H1157QA22_1 │ │ │ │ ├── H1157QA23_1 │ │ │ │ ├── H1157QA24_1 │ │ │ │ ├── H1157QA25_1 │ │ │ │ ├── H1157QA26_1 │ │ │ │ ├── H1157QA27_1 │ │ │ │ ├── H1157QA28_1 │ │ │ │ ├── H1157QA29_1 │ │ │ │ ├── H1157QA2_1 │ │ │ │ ├── H1157QA3_1 │ │ │ │ ├── H1157QA41_1 │ │ │ │ ├── H1157QA42_1 │ │ │ │ ├── H1157QA4_1 │ │ │ │ ├── H1157QA51_1 │ │ │ │ ├── H1157QA52_1 │ │ │ │ ├── H1157QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1166 │ │ │ │ ├── H1166.csv │ │ │ │ ├── H1166QA1_1 │ │ │ │ ├── H1166QA21_1 │ │ │ │ ├── H1166QA22_1 │ │ │ │ ├── H1166QA23_1 │ │ │ │ ├── H1166QA24_1 │ │ │ │ ├── H1166QA25_1 │ │ │ │ ├── H1166QA26_1 │ │ │ │ ├── H1166QA27_1 │ │ │ │ ├── H1166QA28_1 │ │ │ │ ├── H1166QA29_1 │ │ │ │ ├── H1166QA2_1 │ │ │ │ ├── H1166QA3_1 │ │ │ │ ├── H1166QA41_1 │ │ │ │ ├── H1166QA42_1 │ │ │ │ ├── H1166QA4_1 │ │ │ │ ├── H1166QA51_1 │ │ │ │ ├── H1166QA52_1 │ │ │ │ ├── H1166QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1167 │ │ │ │ ├── H1167.csv │ │ │ │ ├── H1167QA1_1 │ │ │ │ ├── H1167QA21_1 │ │ │ │ ├── H1167QA22_1 │ │ │ │ ├── H1167QA23_1 │ │ │ │ ├── H1167QA24_1 │ │ │ │ ├── H1167QA25_1 │ │ │ │ ├── H1167QA26_1 │ │ │ │ ├── H1167QA27_1 │ │ │ │ ├── H1167QA28_1 │ │ │ │ ├── H1167QA29_1 │ │ │ │ ├── H1167QA2_1 │ │ │ │ ├── H1167QA3_1 │ │ │ │ ├── H1167QA41_1 │ │ │ │ ├── H1167QA42_1 │ │ │ │ ├── H1167QA4_1 │ │ │ │ ├── H1167QA51_1 │ │ │ │ ├── H1167QA52_1 │ │ │ │ ├── H1167QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1168 │ │ │ │ ├── H1168.csv │ │ │ │ ├── H1168QA1_1 │ │ │ │ ├── H1168QA21_1 │ │ │ │ ├── H1168QA22_1 │ │ │ │ ├── H1168QA23_1 │ │ │ │ ├── H1168QA24_1 │ │ │ │ ├── H1168QA25_1 │ │ │ │ ├── H1168QA26_1 │ │ │ │ ├── H1168QA27_1 │ │ │ │ ├── H1168QA28_1 │ │ │ │ ├── H1168QA29_1 │ │ │ │ ├── H1168QA2_1 │ │ │ │ ├── H1168QA3_1 │ │ │ │ ├── H1168QA41_1 │ │ │ │ ├── H1168QA42_1 │ │ │ │ ├── H1168QA4_1 │ │ │ │ ├── H1168QA51_1 │ │ │ │ ├── H1168QA52_1 │ │ │ │ ├── H1168QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── H1171 │ │ │ │ └── alphafold_ranking.csv │ │ │ ├── H1172 │ │ │ │ └── alphafold_ranking.csv │ │ │ ├── H1185 │ │ │ │ └── alphafold_ranking.csv │ │ │ ├── T1109 │ │ │ │ ├── T1109.csv │ │ │ │ ├── T1109QA1_1 │ │ │ │ ├── T1109QA21_1 │ │ │ │ ├── T1109QA22_1 │ │ │ │ ├── T1109QA23_1 │ │ │ │ ├── T1109QA24_1 │ │ │ │ ├── T1109QA25_1 │ │ │ │ ├── T1109QA26_1 │ │ │ │ ├── T1109QA27_1 │ │ │ │ ├── T1109QA28_1 │ │ │ │ ├── T1109QA29_1 │ │ │ │ ├── T1109QA2_1 │ │ │ │ ├── T1109QA3_1 │ │ │ │ ├── T1109QA41_1 │ │ │ │ ├── T1109QA42_1 │ │ │ │ ├── T1109QA4_1 │ │ │ │ ├── T1109QA51_1 │ │ │ │ ├── T1109QA52_1 │ │ │ │ ├── T1109QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1110 │ │ │ │ ├── T1110.csv │ │ │ │ ├── T1110QA1_1 │ │ │ │ ├── T1110QA21_1 │ │ │ │ ├── T1110QA22_1 │ │ │ │ ├── T1110QA23_1 │ │ │ │ ├── T1110QA24_1 │ │ │ │ ├── T1110QA25_1 │ │ │ │ ├── T1110QA26_1 │ │ │ │ ├── T1110QA27_1 │ │ │ │ ├── T1110QA28_1 │ │ │ │ ├── T1110QA29_1 │ │ │ │ ├── T1110QA2_1 │ │ │ │ ├── T1110QA3_1 │ │ │ │ ├── T1110QA41_1 │ │ │ │ ├── T1110QA42_1 │ │ │ │ ├── T1110QA4_1 │ │ │ │ ├── T1110QA51_1 │ │ │ │ ├── T1110QA52_1 │ │ │ │ ├── T1110QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1113 │ │ │ │ ├── T1113.csv │ │ │ │ ├── T1113QA1_1 │ │ │ │ ├── T1113QA21_1 │ │ │ │ ├── T1113QA22_1 │ │ │ │ ├── T1113QA23_1 │ │ │ │ ├── T1113QA24_1 │ │ │ │ ├── T1113QA25_1 │ │ │ │ ├── T1113QA26_1 │ │ │ │ ├── T1113QA27_1 │ │ │ │ ├── T1113QA28_1 │ │ │ │ ├── T1113QA29_1 │ │ │ │ ├── T1113QA2_1 │ │ │ │ ├── T1113QA3_1 │ │ │ │ ├── T1113QA41_1 │ │ │ │ ├── T1113QA42_1 │ │ │ │ ├── T1113QA4_1 │ │ │ │ ├── T1113QA51_1 │ │ │ │ ├── T1113QA52_1 │ │ │ │ ├── T1113QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1121 │ │ │ │ ├── T1121.csv │ │ │ │ ├── T1121QA1_1 │ │ │ │ ├── T1121QA21_1 │ │ │ │ ├── T1121QA22_1 │ │ │ │ ├── T1121QA23_1 │ │ │ │ ├── T1121QA24_1 │ │ │ │ ├── T1121QA25_1 │ │ │ │ ├── T1121QA26_1 │ │ │ │ ├── T1121QA27_1 │ │ │ │ ├── T1121QA28_1 │ │ │ │ ├── T1121QA29_1 │ │ │ │ ├── T1121QA2_1 │ │ │ │ ├── T1121QA3_1 │ │ │ │ ├── T1121QA41_1 │ │ │ │ ├── T1121QA42_1 │ │ │ │ ├── T1121QA4_1 │ │ │ │ ├── T1121QA51_1 │ │ │ │ ├── T1121QA52_1 │ │ │ │ ├── T1121QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1123 │ │ │ │ ├── T1123.csv │ │ │ │ ├── T1123QA1_1 │ │ │ │ ├── T1123QA21_1 │ │ │ │ ├── T1123QA22_1 │ │ │ │ ├── T1123QA23_1 │ │ │ │ ├── T1123QA24_1 │ │ │ │ ├── T1123QA25_1 │ │ │ │ ├── T1123QA26_1 │ │ │ │ ├── T1123QA27_1 │ │ │ │ ├── T1123QA28_1 │ │ │ │ ├── T1123QA29_1 │ │ │ │ ├── T1123QA2_1 │ │ │ │ ├── T1123QA3_1 │ │ │ │ ├── T1123QA41_1 │ │ │ │ ├── T1123QA42_1 │ │ │ │ ├── T1123QA4_1 │ │ │ │ ├── T1123QA51_1 │ │ │ │ ├── T1123QA52_1 │ │ │ │ ├── T1123QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1124 │ │ │ │ ├── T1124.csv │ │ │ │ ├── T1124QA1_1 │ │ │ │ ├── T1124QA21_1 │ │ │ │ ├── T1124QA22_1 │ │ │ │ ├── T1124QA23_1 │ │ │ │ ├── T1124QA24_1 │ │ │ │ ├── T1124QA25_1 │ │ │ │ ├── T1124QA26_1 │ │ │ │ ├── T1124QA27_1 │ │ │ │ ├── T1124QA28_1 │ │ │ │ ├── T1124QA29_1 │ │ │ │ ├── T1124QA2_1 │ │ │ │ ├── T1124QA3_1 │ │ │ │ ├── T1124QA41_1 │ │ │ │ ├── T1124QA42_1 │ │ │ │ ├── T1124QA4_1 │ │ │ │ ├── T1124QA51_1 │ │ │ │ ├── T1124QA52_1 │ │ │ │ ├── T1124QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1127 │ │ │ │ ├── T1127.csv │ │ │ │ ├── T1127QA1_1 │ │ │ │ ├── T1127QA21_1 │ │ │ │ ├── T1127QA22_1 │ │ │ │ ├── T1127QA23_1 │ │ │ │ ├── T1127QA24_1 │ │ │ │ ├── T1127QA25_1 │ │ │ │ ├── T1127QA26_1 │ │ │ │ ├── T1127QA27_1 │ │ │ │ ├── T1127QA28_1 │ │ │ │ ├── T1127QA29_1 │ │ │ │ ├── T1127QA2_1 │ │ │ │ ├── T1127QA3_1 │ │ │ │ ├── T1127QA41_1 │ │ │ │ ├── T1127QA42_1 │ │ │ │ ├── T1127QA4_1 │ │ │ │ ├── T1127QA51_1 │ │ │ │ ├── T1127QA52_1 │ │ │ │ ├── T1127QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1132 │ │ │ │ ├── T1132.csv │ │ │ │ ├── T1132QA1_1 │ │ │ │ ├── T1132QA21_1 │ │ │ │ ├── T1132QA22_1 │ │ │ │ ├── T1132QA23_1 │ │ │ │ ├── T1132QA24_1 │ │ │ │ ├── T1132QA25_1 │ │ │ │ ├── T1132QA26_1 │ │ │ │ ├── T1132QA27_1 │ │ │ │ ├── T1132QA28_1 │ │ │ │ ├── T1132QA29_1 │ │ │ │ ├── T1132QA2_1 │ │ │ │ ├── T1132QA3_1 │ │ │ │ ├── T1132QA41_1 │ │ │ │ ├── T1132QA42_1 │ │ │ │ ├── T1132QA4_1 │ │ │ │ ├── T1132QA51_1 │ │ │ │ ├── T1132QA52_1 │ │ │ │ ├── T1132QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1153 │ │ │ │ ├── T1153.csv │ │ │ │ ├── T1153QA1_1 │ │ │ │ ├── T1153QA21_1 │ │ │ │ ├── T1153QA22_1 │ │ │ │ ├── T1153QA23_1 │ │ │ │ ├── T1153QA24_1 │ │ │ │ ├── T1153QA25_1 │ │ │ │ ├── T1153QA26_1 │ │ │ │ ├── T1153QA27_1 │ │ │ │ ├── T1153QA28_1 │ │ │ │ ├── T1153QA29_1 │ │ │ │ ├── T1153QA2_1 │ │ │ │ ├── T1153QA3_1 │ │ │ │ ├── T1153QA41_1 │ │ │ │ ├── T1153QA42_1 │ │ │ │ ├── T1153QA4_1 │ │ │ │ ├── T1153QA51_1 │ │ │ │ ├── T1153QA52_1 │ │ │ │ ├── T1153QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1160 │ │ │ │ ├── T1160.csv │ │ │ │ ├── T1160QA1_1 │ │ │ │ ├── T1160QA21_1 │ │ │ │ ├── T1160QA22_1 │ │ │ │ ├── T1160QA23_1 │ │ │ │ ├── T1160QA24_1 │ │ │ │ ├── T1160QA25_1 │ │ │ │ ├── T1160QA26_1 │ │ │ │ ├── T1160QA27_1 │ │ │ │ ├── T1160QA28_1 │ │ │ │ ├── T1160QA29_1 │ │ │ │ ├── T1160QA2_1 │ │ │ │ ├── T1160QA3_1 │ │ │ │ ├── T1160QA41_1 │ │ │ │ ├── T1160QA42_1 │ │ │ │ ├── T1160QA4_1 │ │ │ │ ├── T1160QA51_1 │ │ │ │ ├── T1160QA52_1 │ │ │ │ ├── T1160QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1161 │ │ │ │ ├── T1161.csv │ │ │ │ ├── T1161QA1_1 │ │ │ │ ├── T1161QA21_1 │ │ │ │ ├── T1161QA22_1 │ │ │ │ ├── T1161QA23_1 │ │ │ │ ├── T1161QA24_1 │ │ │ │ ├── T1161QA25_1 │ │ │ │ ├── T1161QA26_1 │ │ │ │ ├── T1161QA27_1 │ │ │ │ ├── T1161QA28_1 │ │ │ │ ├── T1161QA29_1 │ │ │ │ ├── T1161QA2_1 │ │ │ │ ├── T1161QA3_1 │ │ │ │ ├── T1161QA41_1 │ │ │ │ ├── T1161QA42_1 │ │ │ │ ├── T1161QA4_1 │ │ │ │ ├── T1161QA51_1 │ │ │ │ ├── T1161QA52_1 │ │ │ │ ├── T1161QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1170 │ │ │ │ ├── T1170.csv │ │ │ │ ├── T1170QA1_1 │ │ │ │ ├── T1170QA21_1 │ │ │ │ ├── T1170QA22_1 │ │ │ │ ├── T1170QA23_1 │ │ │ │ ├── T1170QA24_1 │ │ │ │ ├── T1170QA25_1 │ │ │ │ ├── T1170QA26_1 │ │ │ │ ├── T1170QA27_1 │ │ │ │ ├── T1170QA28_1 │ │ │ │ ├── T1170QA29_1 │ │ │ │ ├── T1170QA2_1 │ │ │ │ ├── T1170QA3_1 │ │ │ │ ├── T1170QA41_1 │ │ │ │ ├── T1170QA42_1 │ │ │ │ ├── T1170QA4_1 │ │ │ │ ├── T1170QA51_1 │ │ │ │ ├── T1170QA52_1 │ │ │ │ ├── T1170QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1173 │ │ │ │ ├── T1173.csv │ │ │ │ ├── T1173QA1_1 │ │ │ │ ├── T1173QA21_1 │ │ │ │ ├── T1173QA22_1 │ │ │ │ ├── T1173QA23_1 │ │ │ │ ├── T1173QA24_1 │ │ │ │ ├── T1173QA25_1 │ │ │ │ ├── T1173QA26_1 │ │ │ │ ├── T1173QA27_1 │ │ │ │ ├── T1173QA28_1 │ │ │ │ ├── T1173QA29_1 │ │ │ │ ├── T1173QA2_1 │ │ │ │ ├── T1173QA3_1 │ │ │ │ ├── T1173QA41_1 │ │ │ │ ├── T1173QA42_1 │ │ │ │ ├── T1173QA4_1 │ │ │ │ ├── T1173QA51_1 │ │ │ │ ├── T1173QA52_1 │ │ │ │ ├── T1173QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1174 │ │ │ │ ├── T1174.csv │ │ │ │ ├── T1174QA1_1 │ │ │ │ ├── T1174QA21_1 │ │ │ │ ├── T1174QA22_1 │ │ │ │ ├── T1174QA23_1 │ │ │ │ ├── T1174QA24_1 │ │ │ │ ├── T1174QA25_1 │ │ │ │ ├── T1174QA26_1 │ │ │ │ ├── T1174QA27_1 │ │ │ │ ├── T1174QA28_1 │ │ │ │ ├── T1174QA29_1 │ │ │ │ ├── T1174QA2_1 │ │ │ │ ├── T1174QA3_1 │ │ │ │ ├── T1174QA41_1 │ │ │ │ ├── T1174QA42_1 │ │ │ │ ├── T1174QA4_1 │ │ │ │ ├── T1174QA51_1 │ │ │ │ ├── T1174QA52_1 │ │ │ │ ├── T1174QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1178 │ │ │ │ ├── T1178.csv │ │ │ │ ├── T1178QA1_1 │ │ │ │ ├── T1178QA21_1 │ │ │ │ ├── T1178QA22_1 │ │ │ │ ├── T1178QA23_1 │ │ │ │ ├── T1178QA24_1 │ │ │ │ ├── T1178QA25_1 │ │ │ │ ├── T1178QA26_1 │ │ │ │ ├── T1178QA27_1 │ │ │ │ ├── T1178QA28_1 │ │ │ │ ├── T1178QA29_1 │ │ │ │ ├── T1178QA2_1 │ │ │ │ ├── T1178QA3_1 │ │ │ │ ├── T1178QA41_1 │ │ │ │ ├── T1178QA42_1 │ │ │ │ ├── T1178QA4_1 │ │ │ │ ├── T1178QA51_1 │ │ │ │ ├── T1178QA52_1 │ │ │ │ ├── T1178QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1179 │ │ │ │ ├── T1179.csv │ │ │ │ ├── T1179QA1_1 │ │ │ │ ├── T1179QA21_1 │ │ │ │ ├── T1179QA22_1 │ │ │ │ ├── T1179QA23_1 │ │ │ │ ├── T1179QA24_1 │ │ │ │ ├── T1179QA25_1 │ │ │ │ ├── T1179QA26_1 │ │ │ │ ├── T1179QA27_1 │ │ │ │ ├── T1179QA28_1 │ │ │ │ ├── T1179QA29_1 │ │ │ │ ├── T1179QA2_1 │ │ │ │ ├── T1179QA3_1 │ │ │ │ ├── T1179QA41_1 │ │ │ │ ├── T1179QA42_1 │ │ │ │ ├── T1179QA4_1 │ │ │ │ ├── T1179QA51_1 │ │ │ │ ├── T1179QA52_1 │ │ │ │ ├── T1179QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ ├── T1181 │ │ │ │ ├── T1181.csv │ │ │ │ ├── T1181QA1_1 │ │ │ │ ├── T1181QA21_1 │ │ │ │ ├── T1181QA22_1 │ │ │ │ ├── T1181QA23_1 │ │ │ │ ├── T1181QA24_1 │ │ │ │ ├── T1181QA25_1 │ │ │ │ ├── T1181QA26_1 │ │ │ │ ├── T1181QA27_1 │ │ │ │ ├── T1181QA28_1 │ │ │ │ ├── T1181QA29_1 │ │ │ │ ├── T1181QA2_1 │ │ │ │ ├── T1181QA3_1 │ │ │ │ ├── T1181QA41_1 │ │ │ │ ├── T1181QA42_1 │ │ │ │ ├── T1181QA4_1 │ │ │ │ ├── T1181QA51_1 │ │ │ │ ├── T1181QA52_1 │ │ │ │ ├── T1181QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ │ └── T1187 │ │ │ │ ├── T1187.csv │ │ │ │ ├── T1187QA1_1 │ │ │ │ ├── T1187QA21_1 │ │ │ │ ├── T1187QA22_1 │ │ │ │ ├── T1187QA23_1 │ │ │ │ ├── T1187QA24_1 │ │ │ │ ├── T1187QA25_1 │ │ │ │ ├── T1187QA26_1 │ │ │ │ ├── T1187QA27_1 │ │ │ │ ├── T1187QA28_1 │ │ │ │ ├── T1187QA29_1 │ │ │ │ ├── T1187QA2_1 │ │ │ │ ├── T1187QA3_1 │ │ │ │ ├── T1187QA41_1 │ │ │ │ ├── T1187QA42_1 │ │ │ │ ├── T1187QA4_1 │ │ │ │ ├── T1187QA51_1 │ │ │ │ ├── T1187QA52_1 │ │ │ │ ├── T1187QA5_1 │ │ │ │ ├── alphafold_ranking.csv │ │ │ │ └── pairwise_af_ranking.csv │ │ └── server_qa.csv │ └── multimer_msa_analysis │ │ └── get_depth.py └── preprocessing │ ├── QS │ ├── cif2pdb.py │ ├── download_pdb_file.py │ ├── eva_casp_v2.pl │ ├── filter_incomplete_models.py │ ├── filter_pdb_v2.py │ ├── filter_pdb_v2_strict.py │ ├── pdb_process.py │ ├── pre2zhang.pl │ ├── zscore_1_all.pl │ └── zscore_5_all.pl │ └── TS │ ├── check_chain_num.pl │ ├── eva_casp_v2.pl │ ├── eva_casp_v2_DomainBased.pl │ ├── exmp_eva_v2.sh │ ├── exmp_filter_pdb.sh │ ├── filter_pdb_from_CASP.pl │ ├── filter_pdb_from_PDB.pl │ ├── pdb2seq.pl │ ├── pre2zhang.pl │ ├── zscore_1_all.pl │ └── zscore_5_all.pl ├── examples └── fasta │ ├── H1106.fasta │ ├── T1104.fasta │ ├── T1173.fasta │ ├── test_hetero.fasta │ ├── test_homo.fasta │ └── test_monomer.fasta ├── imgs ├── CASP15_QS_pipeline.png ├── CASP15_TS_pipeline.png ├── CASP15_good_examples1.png └── CASP15_good_examples2.png └── multicom3 ├── __init__.py ├── common ├── __init__.py ├── pipeline.py ├── protein.py └── util.py ├── monomer_alignment_generation ├── __init__.py ├── alignment.py ├── colabfold_msa_runner.py ├── img_msa_runner.py ├── pipeline.py └── rosettafold_msa_runner.py ├── monomer_alignments_concatenation ├── __init__.py ├── pdb_interact_v3.py ├── pipeline_v3.py ├── species_interact_v3.py ├── string_interact_v3.py ├── uniclust_oxmatch_v3.py └── uniprot_distance_v3.py ├── monomer_structure_evaluation ├── __init__.py ├── alphafold_ranking.py ├── bfactor_ranking.py └── pipeline_sep.py ├── monomer_structure_generation ├── __init__.py └── pipeline_v2.py ├── monomer_structure_refinement ├── __init__.py ├── iterative_refine_pipeline.py ├── iterative_refine_pipeline_v4_50.py └── util.py ├── monomer_templates_concatenation ├── __init__.py ├── parsers.py ├── sequence_based_pipeline.py ├── sequence_based_pipeline_complex_pdb.py ├── sequence_based_pipeline_pdb.py └── structure_based_pipeline_v2.py ├── monomer_templates_search ├── __init__.py ├── sequence_based_pipeline_complex.py └── sequence_based_pipeline_pdb.py ├── multimer_structure_evaluation ├── __init__.py ├── alphafold_ranking.py ├── pairwise_mmalign.py └── pipeline.py ├── multimer_structure_generation ├── __init__.py ├── iterative_search_pipeline_v0_2.py ├── iterative_search_pipeline_v0_2_old.py ├── pipeline_homo_v2.py └── pipeline_v2.py ├── multimer_structure_refinement ├── __init__.py ├── iterative_refine_pipeline_heteromer_v1_with_monomer.py ├── iterative_refine_pipeline_homo_v1.py ├── iterative_refine_pipeline_multimer.py └── util.py └── tool ├── __init__.py ├── foldseek.py ├── hhalign.py ├── hhblits.py ├── hhsearch.py ├── jackhmmer.py └── utils.py /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BioinfoMachineLearning/MULTICOM3/HEAD/.gitmodules -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/BioinfoMachineLearning/MULTICOM3/HEAD/README.md -------------------------------------------------------------------------------- /alphafold_addon/customized/data_custom/__init__.py: 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