├── Example_files ├── csv_input_file └── nonsynonymous_table_NONREP_2BS.txt ├── Figures_Python_code ├── Readme.md ├── SRR607967_hg38_bwa_trimmed.edi.fltrd_wgs_AGTC ├── Venn_diagram.py └── hg38 bwa trimmedVShg38 star trimmed.png ├── Figures_R_code ├── AEI_GTEx_selected.txt ├── Fig2.md ├── Fig2_300dpi.png ├── Fig9.md ├── Fig9_300dpi.png ├── PositionEffect2.png ├── PositionEffect2.txt ├── REDI2_hg19_hg38_bwa_star_trimmed_untrimmed ├── R_code_boxplots-heatmap-VolcanoPlot.md ├── STAR_hg19_trimmed_redi2_jacusa_filtered_wgs ├── filtered_full_recoding_table2.txt ├── hillel_AEI_GTEx_selected.png ├── recoding_editing_heatmap2.png ├── volcano_plot_recoding_cerebVSarttib2.txt └── volcano_plots.png ├── LICENSE ├── README.md ├── command_lines.txt ├── fig1_qedit.jpg └── scripts ├── GetREI.py ├── README.md ├── getOverallEditing.py ├── get_DE_events.py ├── sample_path_folder_creator.py └── sample_status_file_creator.py /Example_files/csv_input_file: 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