├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── R-CMD-check.yaml │ ├── pkgdown.yaml │ └── rhub.yaml ├── .gitignore ├── CRAN-RELEASE ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── RcppExports.R ├── color_continuous.R ├── color_discrete.R ├── data.R ├── distance.R ├── distance_matrix.R ├── distantia-package.R ├── distantia.R ├── distantia_aggregate.R ├── distantia_boxplot.R ├── distantia_cluster_hclust.R ├── distantia_cluster_kmeans.R ├── distantia_dtw.R ├── distantia_dtw_plot.R ├── distantia_ls.R ├── distantia_matrix.R ├── distantia_model_frame.R ├── distantia_spatial.R ├── distantia_stats.R ├── distantia_time_delay.R ├── globals.R ├── momentum.R ├── momentum_aggregate.R ├── momentum_boxplot.R ├── momentum_dtw.R ├── momentum_ls.R ├── momentum_model_frame.R ├── momentum_spatial.R ├── momentum_stats.R ├── momentum_to_wide.R ├── psi_auto_distance.R ├── psi_auto_sum.R ├── psi_cost_matrix.R ├── psi_cost_path.R ├── psi_cost_path_sum.R ├── psi_distance_lock_step.R ├── psi_distance_matrix.R ├── psi_equation.R ├── transformations.R ├── tsl_aggregate.R ├── tsl_burst.R ├── tsl_colnames.R ├── tsl_count_NA.R ├── tsl_diagnose.R ├── tsl_handle_NA.R ├── tsl_initialize.R ├── tsl_join.R ├── tsl_names.R ├── tsl_ncol.R ├── tsl_nrow.R ├── tsl_plot.R ├── tsl_repair.R ├── tsl_resample.R ├── tsl_simulate.R ├── tsl_smooth.R ├── tsl_stats.R ├── tsl_subset.R ├── tsl_time.R ├── tsl_to_df.R ├── tsl_transform.R ├── utils_as_time.R ├── utils_block_size.R ├── utils_boxplot_common.R ├── utils_check_args.R ├── utils_check_list_class.R ├── utils_clean_names.R ├── utils_cluster_hclust_optimizer.R ├── utils_cluster_kmeans_optimizer.R ├── utils_cluster_silhouette.R ├── utils_coerce_time_class.R ├── utils_color_breaks.R ├── utils_digits.R ├── utils_distantia_df_split.R ├── utils_drop_geometry.R ├── utils_global_scaling_params.R ├── utils_is_time.R ├── utils_line_color.R ├── utils_line_guide.R ├── utils_matrix_guide.R ├── utils_matrix_plot.R ├── utils_new_time.R ├── utils_optimize_loess.R ├── utils_optimize_spline.R ├── utils_prepare_df.R ├── utils_prepare_matrix.R ├── utils_prepare_matrix_list.R ├── utils_prepare_time.R ├── utils_prepare_vector_list.R ├── utils_prepare_zoo_list.R ├── utils_rescale_vector.R ├── utils_time_keywords.R ├── utils_time_keywords_dictionary.R ├── utils_time_keywords_translate.R ├── utils_time_units.R ├── utils_tsl_pairs.R ├── zoo_aggregate.R ├── zoo_names.R ├── zoo_permute.R ├── zoo_plot.R ├── zoo_resample.R ├── zoo_simulate.R ├── zoo_smooth_exponential.R ├── zoo_smooth_window.R ├── zoo_time.R ├── zoo_to_tsl.R ├── zoo_vector_to_matrix.R └── zzz.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── cran-comments.md ├── data ├── albatross.rda ├── cities_coordinates.rda ├── cities_temperature.rda ├── covid_counties.rda ├── covid_prevalence.rda ├── distances.rda ├── eemian_coordinates.rda ├── eemian_pollen.rda ├── fagus_coordinates.rda ├── fagus_dynamics.rda ├── honeycomb_climate.rda └── honeycomb_polygons.rda ├── data_full ├── albatross.rda ├── california.csv ├── cities_coordinates.rda ├── cities_temperature.rda ├── covid_coordinates.rda ├── covid_polygons.rda ├── covid_prevalence.rda ├── honeycomb_climate.rda ├── honeycomb_distantia.RData ├── honeycomb_polygons.rda └── waxwings │ ├── XC449649 - Ampelis europeo - Bombycilla garrulus.mp3 │ ├── XC83651 - Ampelis europeo - Bombycilla garrulus.mp3 │ ├── files.txt │ └── processing.R ├── dev_scripts ├── albatross.R ├── albatross.csv ├── check_as_cran.sh ├── code_coverage.R ├── counties.R ├── create_test_files.R ├── data.R ├── debugging_orthogonal_dtw.R ├── dependencies_graph.R ├── distances.R ├── distantia_bluesky_demo.qmd ├── github_actions.R ├── install.R ├── linting.R ├── logo.R ├── logo.odp ├── predictors_and_honeycomb.R ├── rhub.R ├── roxyglobals.R └── valgrind.R ├── distantia.Rproj ├── inst ├── CITATION └── WORDLIST ├── man ├── albatross.Rd ├── auto_distance_cpp.Rd ├── auto_sum_cpp.Rd ├── auto_sum_full_cpp.Rd ├── auto_sum_path_cpp.Rd ├── cities_coordinates.Rd ├── cities_temperature.Rd ├── color_continuous.Rd ├── color_discrete.Rd ├── cost_matrix_diagonal_cpp.Rd ├── cost_matrix_diagonal_weighted_cpp.Rd ├── cost_matrix_orthogonal_cpp.Rd ├── cost_path_cpp.Rd ├── cost_path_diagonal_bandwidth_cpp.Rd ├── cost_path_diagonal_cpp.Rd ├── cost_path_orthogonal_bandwidth_cpp.Rd ├── cost_path_orthogonal_cpp.Rd ├── cost_path_slotting_cpp.Rd ├── cost_path_sum_cpp.Rd ├── cost_path_trim_cpp.Rd ├── covid_counties.Rd ├── covid_prevalence.Rd ├── distance.Rd ├── distance_bray_curtis_cpp.Rd ├── distance_canberra_cpp.Rd ├── distance_chebyshev_cpp.Rd ├── distance_chi_cpp.Rd ├── distance_cosine_cpp.Rd ├── distance_euclidean_cpp.Rd ├── distance_hamming_cpp.Rd ├── distance_hellinger_cpp.Rd ├── distance_jaccard_cpp.Rd ├── distance_ls_cpp.Rd ├── distance_manhattan_cpp.Rd ├── distance_matrix.Rd ├── distance_matrix_cpp.Rd ├── distance_russelrao_cpp.Rd ├── distance_sorensen_cpp.Rd ├── distances.Rd ├── distantia-package.Rd ├── distantia.Rd ├── distantia_aggregate.Rd ├── distantia_boxplot.Rd ├── distantia_cluster_hclust.Rd ├── distantia_cluster_kmeans.Rd ├── distantia_dtw.Rd ├── distantia_dtw_plot.Rd ├── distantia_ls.Rd ├── distantia_matrix.Rd ├── distantia_model_frame.Rd ├── distantia_spatial.Rd ├── distantia_stats.Rd ├── distantia_time_delay.Rd ├── eemian_coordinates.Rd ├── eemian_pollen.Rd ├── f_binary.Rd ├── f_clr.Rd ├── f_detrend_difference.Rd ├── f_detrend_linear.Rd ├── f_detrend_poly.Rd ├── f_hellinger.Rd ├── f_list.Rd ├── f_log.Rd ├── f_percent.Rd ├── f_proportion.Rd ├── f_proportion_sqrt.Rd ├── f_rescale_global.Rd ├── f_rescale_local.Rd ├── f_scale_global.Rd ├── f_scale_local.Rd ├── f_trend_linear.Rd ├── f_trend_poly.Rd ├── fagus_coordinates.Rd ├── fagus_dynamics.Rd ├── figures │ ├── README-unnamed-chunk-11-1.png │ ├── README-unnamed-chunk-12-1.png │ ├── README-unnamed-chunk-13-1.png │ ├── README-unnamed-chunk-4-1.png │ ├── README-unnamed-chunk-5-1.png │ ├── README-unnamed-chunk-6-1.png │ ├── README-unnamed-chunk-7-1.png │ ├── README-unnamed-chunk-8-1.png │ ├── README-unnamed-chunk-9-1.png │ └── logo.png ├── honeycomb_climate.Rd ├── honeycomb_polygons.Rd ├── importance_dtw_cpp.Rd ├── importance_dtw_legacy_cpp.Rd ├── importance_ls_cpp.Rd ├── momentum.Rd ├── momentum_aggregate.Rd ├── momentum_boxplot.Rd ├── momentum_dtw.Rd ├── momentum_ls.Rd ├── momentum_model_frame.Rd ├── momentum_spatial.Rd ├── momentum_stats.Rd ├── momentum_to_wide.Rd ├── permute_free_by_row_cpp.Rd ├── permute_free_cpp.Rd ├── permute_restricted_by_row_cpp.Rd ├── permute_restricted_cpp.Rd ├── psi_auto_distance.Rd ├── psi_auto_sum.Rd ├── psi_cost_matrix.Rd ├── psi_cost_path.Rd ├── psi_cost_path_sum.Rd ├── psi_distance_lock_step.Rd ├── psi_distance_matrix.Rd ├── psi_dtw_cpp.Rd ├── psi_equation.Rd ├── psi_equation_cpp.Rd ├── psi_ls_cpp.Rd ├── psi_null_dtw_cpp.Rd ├── psi_null_ls_cpp.Rd ├── subset_matrix_by_rows_cpp.Rd ├── tsl_aggregate.Rd ├── tsl_burst.Rd ├── tsl_colnames_clean.Rd ├── tsl_colnames_get.Rd ├── tsl_colnames_prefix.Rd ├── tsl_colnames_set.Rd ├── tsl_colnames_suffix.Rd ├── tsl_count_NA.Rd ├── tsl_diagnose.Rd ├── tsl_handle_NA.Rd ├── tsl_initialize.Rd ├── tsl_join.Rd ├── tsl_names_clean.Rd ├── tsl_names_get.Rd ├── tsl_names_set.Rd ├── tsl_names_test.Rd ├── tsl_ncol.Rd ├── tsl_nrow.Rd ├── tsl_plot.Rd ├── tsl_repair.Rd ├── tsl_resample.Rd ├── tsl_simulate.Rd ├── tsl_smooth.Rd ├── tsl_stats.Rd ├── tsl_subset.Rd ├── tsl_time.Rd ├── tsl_to_df.Rd ├── tsl_transform.Rd ├── utils_as_time.Rd ├── utils_block_size.Rd ├── utils_boxplot_common.Rd ├── utils_check_args_distantia.Rd ├── utils_check_args_matrix.Rd ├── utils_check_args_momentum.Rd ├── utils_check_args_path.Rd ├── utils_check_args_tsl.Rd ├── utils_check_args_zoo.Rd ├── utils_check_distance_args.Rd ├── utils_check_list_class.Rd ├── utils_clean_names.Rd ├── utils_cluster_hclust_optimizer.Rd ├── utils_cluster_kmeans_optimizer.Rd ├── utils_cluster_silhouette.Rd ├── utils_coerce_time_class.Rd ├── utils_color_breaks.Rd ├── utils_digits.Rd ├── utils_distantia_df_split.Rd ├── utils_drop_geometry.Rd ├── utils_global_scaling_params.Rd ├── utils_is_time.Rd ├── utils_line_color.Rd ├── utils_line_guide.Rd ├── utils_matrix_guide.Rd ├── utils_matrix_plot.Rd ├── utils_new_time.Rd ├── utils_optimize_loess.Rd ├── utils_optimize_spline.Rd ├── utils_prepare_df.Rd ├── utils_prepare_matrix.Rd ├── utils_prepare_matrix_list.Rd ├── utils_prepare_time.Rd ├── utils_prepare_vector_list.Rd ├── utils_prepare_zoo_list.Rd ├── utils_rescale_vector.Rd ├── utils_time_keywords.Rd ├── utils_time_keywords_dictionary.Rd ├── utils_time_keywords_translate.Rd ├── utils_time_units.Rd ├── utils_tsl_pairs.Rd ├── zoo_aggregate.Rd ├── zoo_name_clean.Rd ├── zoo_name_get.Rd ├── zoo_name_set.Rd ├── zoo_permute.Rd ├── zoo_plot.Rd ├── zoo_resample.Rd ├── zoo_simulate.Rd ├── zoo_smooth_exponential.Rd ├── zoo_smooth_window.Rd ├── zoo_time.Rd ├── zoo_to_tsl.Rd └── zoo_vector_to_matrix.Rd ├── pkgdown ├── extra.css └── favicon │ ├── apple-touch-icon.png │ ├── favicon-96x96.png │ ├── favicon.ico │ ├── favicon.svg │ ├── site.webmanifest │ ├── web-app-manifest-192x192.png │ └── web-app-manifest-512x512.png ├── src ├── .gitignore ├── RcppExports.cpp ├── RcppExports.o ├── auto_sum.cpp ├── auto_sum.h ├── auto_sum.o ├── cost_matrix.cpp ├── cost_matrix.h ├── cost_matrix.o ├── cost_path.cpp ├── cost_path.h ├── cost_path.o ├── distance_matrix.cpp ├── distance_matrix.h ├── distance_matrix.o ├── distance_methods.cpp ├── distance_methods.h ├── distance_methods.o ├── distantia.so ├── importance.cpp ├── importance.h ├── importance.o ├── permute.cpp ├── permute.h ├── permute.o ├── psi.cpp ├── psi.h └── psi.o ├── tests ├── spelling.R ├── testthat.R └── testthat │ ├── test-distance.R │ ├── test-distance_matrix.R │ ├── test-distantia.R │ ├── test-distantia_cluster_hclust.R │ ├── test-distantia_cluster_kmeans.R │ ├── test-distantia_model_frame.R │ ├── test-distantia_spatial.R │ ├── test-distantia_time_shift.R │ ├── test-momentum.R │ ├── test-psi_equation.R │ ├── test-tsl_aggregate.R │ ├── test-tsl_burst.R │ ├── test-tsl_colnames.R │ ├── test-tsl_count_NA.R │ ├── test-tsl_diagnose.R │ ├── test-tsl_handle_NA.R │ ├── test-tsl_initialize.R │ ├── test-tsl_join.R │ ├── test-tsl_names.R │ ├── test-tsl_ncol.R │ ├── test-tsl_repair.R │ ├── test-tsl_resample.R │ ├── test-tsl_smooth.R │ ├── test-tsl_stats.R │ ├── test-tsl_subset.R │ ├── test-tsl_time.R │ ├── test-tsl_to_df.R │ ├── test-tsl_transform.R │ ├── test-utils_as_time.R │ ├── test-utils_clean_names.R │ ├── test-utils_cluster.R │ ├── test-utils_coerce_time_class.R │ ├── test-utils_digits.R │ ├── test-utils_distantia_df_split.R │ ├── test-utils_is_time.R │ ├── test-utils_new_time.R │ ├── test-utils_optimize_loess.R │ ├── test-utils_optimize_spline.R │ ├── test-utils_prepare_zoo_list.R │ ├── test-utils_rescale_vector.R │ ├── test-utils_time_keywords.R │ ├── test-utils_time_keywords_dictionary.R │ ├── test-utils_time_keywords_translate.R │ ├── test-utils_time_units.R │ ├── 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