├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ └── R-CMD-check.yaml ├── .gitignore ├── CRAN-RELEASE ├── CRAN-SUBMISSION ├── DESCRIPTION ├── Informal_tests.R ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── auc.R ├── auto_cor.R ├── auto_vif.R ├── beowulf_cluster.R ├── case_weights.R ├── default_distance_thresholds.R ├── distance_matrix.R ├── double_center_distance_matrix.R ├── filter_spatial_predictors.R ├── get_evaluation.R ├── get_importance.R ├── get_importance_local.R ├── get_moran.R ├── get_performance.R ├── get_predictions.R ├── get_residuals.R ├── get_response_curves.R ├── get_spatial_predictors.R ├── is_binary.R ├── make_spatial_fold.R ├── make_spatial_folds.R ├── mem.R ├── mem_multithreshold.R ├── moran.R ├── moran_multithreshold.R ├── objects_size.R ├── optimization_function.R ├── pca.R ├── pca_multithreshold.R ├── plant_richness_df.R ├── plot_evaluation.R ├── plot_importance.R ├── plot_moran.R ├── plot_optimization.R ├── plot_residuals_diagnostics.R ├── plot_response_curves.R ├── plot_response_surface.R ├── plot_training_df.R ├── plot_training_df_moran.R ├── plot_tuning.R ├── prepare_importance_spatial.R ├── print.R ├── print_evaluation.R ├── print_importance.R ├── print_moran.R ├── print_performance.R ├── rank_spatial_predictors.R ├── rescale_vector.R ├── residuals_diagnostics.R ├── residuals_test.R ├── rf.R ├── rf_compare.R ├── rf_evaluate.R ├── rf_importance.R ├── rf_repeat.R ├── rf_spatial.R ├── rf_tuning.R ├── root_mean_squared_error.R ├── select_spatial_predictors_recursive.R ├── select_spatial_predictors_sequential.R ├── standard_error.R ├── statistical_mode.R ├── the_feature_engineer.R ├── thinning.R ├── thinning_til_n.R ├── vif.R └── weights_from_distance_matrix.R ├── README.Rmd ├── README.html ├── README.md ├── README_files └── figure-gfm │ ├── unnamed-chunk-10-1.png │ ├── unnamed-chunk-100-1.png │ ├── unnamed-chunk-105-1.png │ ├── unnamed-chunk-106-1.png │ ├── unnamed-chunk-108-1.png │ ├── unnamed-chunk-11-1.png │ ├── 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unnamed-chunk-44-2.png │ ├── unnamed-chunk-45-1.png │ ├── unnamed-chunk-46-1.png │ ├── unnamed-chunk-47-1.png │ ├── unnamed-chunk-48-1.png │ ├── unnamed-chunk-49-1.png │ ├── unnamed-chunk-5-1.png │ ├── unnamed-chunk-50-1.png │ ├── unnamed-chunk-50-2.png │ ├── unnamed-chunk-50-3.png │ ├── unnamed-chunk-50-4.png │ ├── unnamed-chunk-50-5.png │ ├── unnamed-chunk-50-6.png │ ├── unnamed-chunk-50-7.png │ ├── unnamed-chunk-50-8.png │ ├── unnamed-chunk-51-1.png │ ├── unnamed-chunk-52-1.png │ ├── unnamed-chunk-53-1.png │ ├── unnamed-chunk-54-1.png │ ├── unnamed-chunk-55-1.png │ ├── unnamed-chunk-56-1.png │ ├── unnamed-chunk-57-1.png │ ├── unnamed-chunk-58-1.png │ ├── unnamed-chunk-59-1.png │ ├── unnamed-chunk-6-1.png │ ├── unnamed-chunk-60-1.png │ ├── unnamed-chunk-61-1.png │ ├── unnamed-chunk-62-1.png │ ├── unnamed-chunk-63-1.png │ ├── unnamed-chunk-64-1.png │ ├── unnamed-chunk-65-1.png │ ├── unnamed-chunk-67-1.png │ ├── unnamed-chunk-68-1.png │ ├── unnamed-chunk-69-1.png │ ├── unnamed-chunk-7-1.png │ ├── unnamed-chunk-71-1.png │ ├── unnamed-chunk-72-1.png │ ├── unnamed-chunk-73-1.png │ ├── unnamed-chunk-75-1.png │ ├── unnamed-chunk-76-1.png │ ├── unnamed-chunk-77-1.png │ ├── unnamed-chunk-8-1.png │ ├── unnamed-chunk-81-1.png │ ├── unnamed-chunk-82-1.png │ ├── unnamed-chunk-88-1.png │ ├── unnamed-chunk-89-1.png │ ├── unnamed-chunk-9-1.png │ ├── unnamed-chunk-90-1.png │ ├── unnamed-chunk-91-1.png │ ├── unnamed-chunk-94-1.png │ ├── unnamed-chunk-95-1.png │ └── unnamed-chunk-99-1.png ├── _config.yml ├── _pkgdown.yml ├── cran-comments.md ├── data ├── distance_matrix.rda └── plant_richness_df.rda ├── dev_history.R ├── docs ├── 404.html ├── LICENSE.html ├── README_files │ └── figure-gfm │ │ ├── unnamed-chunk-10-1.png │ │ ├── unnamed-chunk-100-1.png │ │ ├── unnamed-chunk-105-1.png │ │ ├── unnamed-chunk-106-1.png │ │ ├── unnamed-chunk-108-1.png │ │ ├── unnamed-chunk-11-1.png │ │ ├── unnamed-chunk-110-1.png │ │ ├── unnamed-chunk-111-1.png │ │ ├── unnamed-chunk-113-1.png │ │ ├── unnamed-chunk-114-1.png │ │ ├── unnamed-chunk-115-1.png │ │ ├── unnamed-chunk-116-1.png │ │ ├── unnamed-chunk-12-1.png │ │ ├── unnamed-chunk-123-1.png │ │ ├── unnamed-chunk-124-1.png │ │ ├── unnamed-chunk-129-1.png │ │ ├── unnamed-chunk-13-1.png │ │ ├── unnamed-chunk-130-1.png │ │ ├── unnamed-chunk-14-1.png │ │ ├── unnamed-chunk-14-2.png │ │ ├── unnamed-chunk-14-3.png │ │ ├── unnamed-chunk-147-1.png │ │ ├── unnamed-chunk-148-1.png │ │ ├── unnamed-chunk-149-1.png │ │ ├── unnamed-chunk-15-1.png │ │ ├── unnamed-chunk-15-2.png │ │ ├── unnamed-chunk-151-1.png │ │ ├── unnamed-chunk-157-1.png │ │ ├── unnamed-chunk-158-1.png │ │ ├── unnamed-chunk-16-1.png │ │ ├── unnamed-chunk-164-1.png │ │ ├── unnamed-chunk-165-1.png │ │ ├── unnamed-chunk-166-1.png │ │ ├── unnamed-chunk-167-1.png │ │ ├── unnamed-chunk-17-1.png │ │ ├── unnamed-chunk-170-1.png │ │ ├── unnamed-chunk-171-1.png │ │ ├── unnamed-chunk-175-1.png │ │ ├── unnamed-chunk-176-1.png │ │ ├── unnamed-chunk-18-1.png │ │ ├── unnamed-chunk-18-2.png │ │ ├── unnamed-chunk-181-1.png │ │ ├── unnamed-chunk-182-1.png │ │ ├── unnamed-chunk-19-1.png │ │ ├── unnamed-chunk-19-2.png │ │ ├── unnamed-chunk-2-1.png │ │ ├── unnamed-chunk-20-1.png │ │ ├── unnamed-chunk-20-2.png │ │ ├── unnamed-chunk-21-1.png │ │ ├── unnamed-chunk-22-1.png │ │ ├── unnamed-chunk-23-1.png │ │ ├── unnamed-chunk-24-1.png │ │ ├── unnamed-chunk-25-1.png │ │ ├── unnamed-chunk-26-1.png │ │ ├── unnamed-chunk-27-1.png │ │ ├── unnamed-chunk-28-1.png │ │ ├── unnamed-chunk-29-1.png │ │ ├── unnamed-chunk-30-1.png │ │ ├── unnamed-chunk-31-1.png │ │ ├── unnamed-chunk-32-1.png │ │ ├── unnamed-chunk-33-1.png │ │ ├── unnamed-chunk-34-1.png │ │ ├── unnamed-chunk-35-1.png │ │ ├── unnamed-chunk-35-2.png │ │ ├── unnamed-chunk-36-1.png │ │ ├── unnamed-chunk-37-1.png │ │ ├── unnamed-chunk-38-1.png │ │ ├── unnamed-chunk-39-1.png │ │ ├── unnamed-chunk-40-1.png │ │ ├── unnamed-chunk-41-1.png │ │ ├── unnamed-chunk-42-1.png │ │ ├── unnamed-chunk-43-1.png │ │ ├── unnamed-chunk-44-1.png │ │ ├── unnamed-chunk-44-2.png │ │ ├── unnamed-chunk-45-1.png │ │ ├── unnamed-chunk-46-1.png │ │ ├── unnamed-chunk-47-1.png │ │ ├── unnamed-chunk-48-1.png │ │ ├── unnamed-chunk-49-1.png │ │ ├── unnamed-chunk-5-1.png │ │ ├── unnamed-chunk-50-1.png │ │ ├── unnamed-chunk-50-2.png │ │ ├── unnamed-chunk-50-3.png │ │ ├── unnamed-chunk-50-4.png │ │ ├── unnamed-chunk-50-5.png │ │ ├── unnamed-chunk-50-6.png │ │ ├── unnamed-chunk-50-7.png │ │ ├── unnamed-chunk-50-8.png │ │ ├── unnamed-chunk-51-1.png │ │ ├── unnamed-chunk-52-1.png │ │ ├── unnamed-chunk-53-1.png │ │ ├── unnamed-chunk-54-1.png │ │ ├── unnamed-chunk-55-1.png │ │ ├── unnamed-chunk-56-1.png │ │ ├── unnamed-chunk-57-1.png │ │ ├── unnamed-chunk-58-1.png │ │ ├── unnamed-chunk-59-1.png │ │ ├── unnamed-chunk-6-1.png │ │ ├── unnamed-chunk-60-1.png │ │ ├── unnamed-chunk-61-1.png │ │ ├── unnamed-chunk-62-1.png │ │ ├── unnamed-chunk-63-1.png │ │ ├── unnamed-chunk-64-1.png │ │ ├── unnamed-chunk-65-1.png │ │ ├── unnamed-chunk-67-1.png │ │ ├── unnamed-chunk-68-1.png │ │ ├── unnamed-chunk-69-1.png │ │ ├── unnamed-chunk-7-1.png │ │ ├── unnamed-chunk-71-1.png │ │ ├── unnamed-chunk-72-1.png │ │ ├── unnamed-chunk-73-1.png │ │ ├── unnamed-chunk-75-1.png │ │ ├── unnamed-chunk-76-1.png │ │ ├── unnamed-chunk-77-1.png │ │ ├── unnamed-chunk-8-1.png │ │ ├── unnamed-chunk-81-1.png │ │ ├── unnamed-chunk-82-1.png │ │ ├── unnamed-chunk-88-1.png │ │ ├── unnamed-chunk-89-1.png │ │ ├── unnamed-chunk-9-1.png │ │ ├── unnamed-chunk-90-1.png │ │ ├── unnamed-chunk-91-1.png │ │ ├── unnamed-chunk-94-1.png │ │ ├── unnamed-chunk-95-1.png │ │ └── unnamed-chunk-99-1.png ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── index.html ├── link.svg ├── news │ └── index.html ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml ├── reference │ ├── Rplot001.png │ ├── aggregate_importance.html │ ├── auc.html │ ├── auto_cor.html │ ├── auto_vif.html │ ├── beowulf_cluster.html │ ├── case_weights.html │ ├── cluster_specification.html │ ├── default_distance_thresholds.html │ ├── distance_matrix.html │ ├── double_center_distance_matrix.html │ ├── filter_spatial_predictors.html │ ├── get_evaluation.html │ ├── get_importance.html │ ├── get_importance_local.html │ ├── get_moran.html │ ├── get_performance.html │ ├── get_predictions.html │ ├── get_residuals.html │ ├── get_response_curves.html │ ├── get_spatial_predictors.html │ ├── index.html │ ├── is_binary.html │ ├── make_spatial_fold.html │ ├── make_spatial_folds.html │ ├── mem.html │ ├── mem_multithreshold.html │ ├── moran.html │ ├── moran_multithreshold.html │ ├── normality.html │ ├── objects_size.html │ ├── optimization_function.html │ ├── pca.html │ ├── pca_multithreshold.html │ ├── plant_richness_df.html │ ├── plot_evaluation.html │ ├── plot_importance.html │ ├── plot_moran.html │ ├── plot_optimization.html │ ├── plot_residuals_diagnostics.html │ ├── plot_response_curves.html │ ├── plot_response_surface.html │ ├── plot_response_surfaces.html │ ├── plot_training_df.html │ ├── plot_training_df_moran.html │ ├── plot_tuning.html │ ├── prepare_importance_spatial.html │ ├── print.html │ ├── print_evaluation.html │ ├── print_importance.html │ ├── print_moran.html │ ├── print_performance.html │ ├── rank_spatial_predictors.html │ ├── rescale_vector.html │ ├── residuals_diagnostics.html │ ├── rf.html │ ├── rf_compare.html │ ├── rf_evaluate.html │ ├── rf_importance.html │ ├── rf_interactions.html │ ├── rf_repeat.html │ ├── rf_spatial.html │ ├── rf_tuning.html │ ├── root_mean_squared_error.html │ ├── scale_robust.html │ ├── select_spatial_predictors_recursive.html │ ├── select_spatial_predictors_sequential.html │ ├── standard_error.html │ ├── statistical_mode.html │ ├── the_feature_engineer.html │ ├── thinning.html │ ├── thinning_til_n.html │ ├── vif.html │ └── weights_from_distance_matrix.html └── sitemap.xml ├── inst ├── CITATION └── WORDLIST ├── man ├── auc.Rd ├── auto_cor.Rd ├── auto_vif.Rd ├── beowulf_cluster.Rd ├── case_weights.Rd ├── default_distance_thresholds.Rd ├── distance_matrix.Rd ├── double_center_distance_matrix.Rd ├── filter_spatial_predictors.Rd ├── get_evaluation.Rd ├── get_importance.Rd ├── get_importance_local.Rd ├── get_moran.Rd ├── get_performance.Rd ├── get_predictions.Rd ├── get_residuals.Rd ├── get_response_curves.Rd ├── get_spatial_predictors.Rd ├── is_binary.Rd ├── make_spatial_fold.Rd ├── make_spatial_folds.Rd ├── mem.Rd ├── mem_multithreshold.Rd ├── moran.Rd ├── moran_multithreshold.Rd ├── normality.Rd ├── objects_size.Rd ├── optimization_function.Rd ├── pca.Rd ├── pca_multithreshold.Rd ├── plant_richness_df.Rd ├── plot_evaluation.Rd ├── plot_importance.Rd ├── plot_moran.Rd ├── plot_optimization.Rd ├── plot_residuals_diagnostics.Rd ├── plot_response_curves.Rd ├── plot_response_surface.Rd ├── plot_training_df.Rd ├── plot_training_df_moran.Rd ├── plot_tuning.Rd ├── prepare_importance_spatial.Rd ├── print.Rd ├── print_evaluation.Rd ├── print_importance.Rd ├── print_moran.Rd ├── print_performance.Rd ├── rank_spatial_predictors.Rd ├── rescale_vector.Rd ├── residuals_diagnostics.Rd ├── rf.Rd ├── rf_compare.Rd ├── rf_evaluate.Rd ├── rf_importance.Rd ├── rf_repeat.Rd ├── rf_spatial.Rd ├── rf_tuning.Rd ├── root_mean_squared_error.Rd ├── select_spatial_predictors_recursive.Rd ├── select_spatial_predictors_sequential.Rd ├── standard_error.Rd ├── statistical_mode.Rd ├── the_feature_engineer.Rd ├── thinning.Rd ├── thinning_til_n.Rd ├── vif.Rd └── weights_from_distance_matrix.Rd ├── spatialRF.Rproj └── tests ├── spelling.R ├── testthat.R └── testthat ├── test-auc-examples.R ├── test-auto_cor-examples.R ├── test-auto_vif-examples.R ├── test-case_weights-examples.R ├── test-default_distance_thresholds-examples.R ├── test-double_center_distance_matrix-examples.R ├── test-get_evaluation-examples.R ├── test-get_importance-examples.R ├── test-get_moran-examples.R ├── test-get_performance-examples.R ├── test-get_predictions-examples.R ├── test-get_residuals-examples.R ├── test-get_spatial_predictors-examples.R ├── test-is_binary-examples.R ├── test-make_spatial_fold-examples.R ├── test-make_spatial_folds-examples.R ├── test-mem-examples.R ├── test-mem_multithreshold-examples.R ├── test-moran-examples.R ├── test-moran_multithreshold-examples.R ├── test-objects_size-examples.R ├── test-pca-examples.R ├── test-pca_multithreshold-examples.R ├── test-plot_importance-examples.R ├── test-plot_moran-examples.R ├── test-plot_response_curves-examples.R ├── test-plot_response_surface-examples.R ├── test-rank_spatial_predictors-examples.R ├── test-rescale_vector-examples.R ├── test-rf-examples.R ├── test-rf_evaluate-examples.R ├── test-rf_repeat-examples.R ├── test-rf_spatial-examples.R ├── test-rf_tuning-examples.R ├── test-root_mean_squared_error-examples.R ├── test-select_spatial_predictors_recursive-examples.R ├── test-select_spatial_predictors_sequential-examples.R ├── 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