├── .dockerignore ├── .gitignore ├── Dockerfile ├── LICENSE ├── README.md ├── README.pypi.md ├── deepsig ├── __init__.py ├── crf.py ├── crfdecoding.py ├── deepsig.py ├── deepsigconfig.py ├── helpers.py └── workenv.py ├── environment.yml ├── models ├── crf │ ├── euk │ │ ├── model.seq.w15.s0.009.l96.0.0 │ │ ├── model.seq.w15.s0.009.l96.0.1 │ │ ├── model.seq.w15.s0.009.l96.0.2 │ │ ├── model.seq.w15.s0.009.l96.0.3 │ │ ├── model.seq.w15.s0.009.l96.1.0 │ │ ├── model.seq.w15.s0.009.l96.1.1 │ │ ├── model.seq.w15.s0.009.l96.1.2 │ │ ├── model.seq.w15.s0.009.l96.1.3 │ │ ├── model.seq.w15.s0.009.l96.2.0 │ │ ├── model.seq.w15.s0.009.l96.2.1 │ │ ├── model.seq.w15.s0.009.l96.2.2 │ │ ├── model.seq.w15.s0.009.l96.2.3 │ │ ├── model.seq.w15.s0.009.l96.3.0 │ │ ├── model.seq.w15.s0.009.l96.3.1 │ │ ├── model.seq.w15.s0.009.l96.3.2 │ │ ├── model.seq.w15.s0.009.l96.3.3 │ │ ├── model.seq.w15.s0.009.l96.4.0 │ │ ├── model.seq.w15.s0.009.l96.4.1 │ │ ├── model.seq.w15.s0.009.l96.4.2 │ │ ├── model.seq.w15.s0.009.l96.4.3 │ │ ├── model.seq.w15.s0.009.l96.new.0.0 │ │ ├── model.seq.w15.s0.009.l96.new.0.1 │ │ ├── model.seq.w15.s0.009.l96.new.0.2 │ │ ├── model.seq.w15.s0.009.l96.new.0.3 │ │ ├── model.seq.w15.s0.009.l96.new.1.0 │ │ ├── model.seq.w15.s0.009.l96.new.1.1 │ │ ├── model.seq.w15.s0.009.l96.new.1.2 │ │ ├── model.seq.w15.s0.009.l96.new.1.3 │ │ ├── model.seq.w15.s0.009.l96.new.2.0 │ │ ├── model.seq.w15.s0.009.l96.new.2.1 │ │ ├── model.seq.w15.s0.009.l96.new.2.2 │ │ ├── model.seq.w15.s0.009.l96.new.2.3 │ │ ├── model.seq.w15.s0.009.l96.new.3.0 │ │ ├── model.seq.w15.s0.009.l96.new.3.1 │ │ ├── model.seq.w15.s0.009.l96.new.3.2 │ │ ├── model.seq.w15.s0.009.l96.new.3.3 │ │ ├── model.seq.w15.s0.009.l96.new.4.0 │ │ ├── model.seq.w15.s0.009.l96.new.4.1 │ │ ├── model.seq.w15.s0.009.l96.new.4.2 │ │ └── model.seq.w15.s0.009.l96.new.4.3 │ ├── gramn │ │ ├── model.seq.w15.s0.009.l96.1.0 │ │ ├── model.seq.w15.s0.009.l96.1.1 │ │ ├── model.seq.w15.s0.009.l96.1.2 │ │ ├── model.seq.w15.s0.009.l96.1.3 │ │ ├── model.seq.w15.s0.009.l96.2.0 │ │ ├── model.seq.w15.s0.009.l96.2.1 │ │ ├── model.seq.w15.s0.009.l96.2.2 │ │ ├── model.seq.w15.s0.009.l96.2.3 │ │ ├── model.seq.w15.s0.009.l96.3.0 │ │ ├── model.seq.w15.s0.009.l96.3.1 │ │ ├── model.seq.w15.s0.009.l96.3.2 │ │ ├── model.seq.w15.s0.009.l96.3.3 │ │ ├── model.seq.w15.s0.009.l96.4.0 │ │ ├── model.seq.w15.s0.009.l96.4.1 │ │ ├── model.seq.w15.s0.009.l96.4.2 │ │ ├── model.seq.w15.s0.009.l96.4.3 │ │ ├── model.seq.w15.s0.009.l96.new.1.0 │ │ ├── model.seq.w15.s0.009.l96.new.1.1 │ │ ├── model.seq.w15.s0.009.l96.new.1.2 │ │ ├── model.seq.w15.s0.009.l96.new.1.3 │ │ ├── model.seq.w15.s0.009.l96.new.2.0 │ │ ├── model.seq.w15.s0.009.l96.new.2.1 │ │ ├── model.seq.w15.s0.009.l96.new.2.2 │ │ ├── model.seq.w15.s0.009.l96.new.2.3 │ │ ├── model.seq.w15.s0.009.l96.new.3.0 │ │ ├── model.seq.w15.s0.009.l96.new.3.1 │ │ ├── model.seq.w15.s0.009.l96.new.3.2 │ │ ├── model.seq.w15.s0.009.l96.new.3.3 │ │ ├── model.seq.w15.s0.009.l96.new.4.0 │ │ ├── model.seq.w15.s0.009.l96.new.4.1 │ │ ├── model.seq.w15.s0.009.l96.new.4.2 │ │ ├── model.seq.w15.s0.009.l96.new.4.3 │ │ ├── model.seq.w15.s0.05.l96.0.0 │ │ ├── model.seq.w15.s0.05.l96.0.1 │ │ ├── model.seq.w15.s0.05.l96.0.2 │ │ ├── model.seq.w15.s0.05.l96.0.3 │ │ ├── model.seq.w15.s0.05.l96.new.0.0 │ │ ├── model.seq.w15.s0.05.l96.new.0.1 │ │ ├── model.seq.w15.s0.05.l96.new.0.2 │ │ └── model.seq.w15.s0.05.l96.new.0.3 │ └── gramp │ │ ├── model.seq.w7.s0.005.l96.1.0 │ │ ├── model.seq.w7.s0.005.l96.1.1 │ │ ├── model.seq.w7.s0.005.l96.1.2 │ │ ├── model.seq.w7.s0.005.l96.1.3 │ │ ├── model.seq.w7.s0.009.l96.0.0 │ │ ├── model.seq.w7.s0.009.l96.0.1 │ │ ├── model.seq.w7.s0.009.l96.0.2 │ │ ├── model.seq.w7.s0.009.l96.0.3 │ │ ├── model.seq.w7.s0.009.l96.2.0 │ │ ├── model.seq.w7.s0.009.l96.2.1 │ │ ├── model.seq.w7.s0.009.l96.2.2 │ │ ├── model.seq.w7.s0.009.l96.2.3 │ │ ├── model.seq.w7.s0.009.l96.3.0 │ │ ├── model.seq.w7.s0.009.l96.3.1 │ │ ├── model.seq.w7.s0.009.l96.3.2 │ │ ├── model.seq.w7.s0.009.l96.3.3 │ │ ├── model.seq.w7.s0.009.l96.4.0 │ │ ├── model.seq.w7.s0.009.l96.4.1 │ │ ├── model.seq.w7.s0.009.l96.4.2 │ │ └── model.seq.w7.s0.009.l96.4.3 └── dnn │ ├── euk │ ├── model.0.0.relevance.txt.arch.json │ ├── model.0.0.relevance.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k128.l96.1.0.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k128.l96.1.0.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k128.l96.1.1.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k128.l96.1.1.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k128.l96.1.2.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k128.l96.1.2.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k128.l96.1.3.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k128.l96.1.3.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k128.l96.3.0.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k128.l96.3.0.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k128.l96.3.1.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k128.l96.3.1.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k128.l96.3.2.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k128.l96.3.2.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k128.l96.3.3.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k128.l96.3.3.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.0.0.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.0.0.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.0.1.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.0.1.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.0.2.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.0.2.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.0.3.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.0.3.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.2.0.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.2.0.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.2.1.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.2.1.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.2.2.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.2.2.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.2.3.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.2.3.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k64.l96.4.0.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k64.l96.4.0.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k64.l96.4.1.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k64.l96.4.1.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k64.l96.4.2.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k64.l96.4.2.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k64.l96.4.3.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k64.l96.4.3.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k128.l96.0.0.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k128.l96.0.0.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k128.l96.0.1.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k128.l96.0.1.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k128.l96.0.2.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k128.l96.0.2.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k128.l96.0.3.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k128.l96.0.3.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k16.l96.4.0.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k16.l96.4.0.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k16.l96.4.1.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k16.l96.4.1.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k16.l96.4.2.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k16.l96.4.2.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k16.l96.4.3.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k16.l96.4.3.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k32.l96.1.0.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k32.l96.1.0.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k32.l96.1.1.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k32.l96.1.1.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k32.l96.1.2.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k32.l96.1.2.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k32.l96.1.3.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k32.l96.1.3.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k32.l96.2.0.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k32.l96.2.0.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k32.l96.2.1.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k32.l96.2.1.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k32.l96.2.2.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k32.l96.2.2.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k32.l96.2.3.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k32.l96.2.3.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k64.l96.3.0.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k64.l96.3.0.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k64.l96.3.1.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k64.l96.3.1.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k64.l96.3.2.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k64.l96.3.2.txt.hdf5 │ ├── model.3cl.w21.f16-32-64.k64.l96.3.3.txt.arch.json │ ├── model.3cl.w21.f16-32-64.k64.l96.3.3.txt.hdf5 │ ├── model.4.0.relevance.txt.arch.json │ ├── model.4.0.relevance.txt.hdf5 │ ├── model.4.1.relevance.txt.arch.json │ ├── model.4.1.relevance.txt.hdf5 │ ├── model.4.2.relevance.txt.arch.json │ ├── model.4.2.relevance.txt.hdf5 │ ├── model.4.3.relevance.txt.arch.json │ └── model.4.3.relevance.txt.hdf5 │ ├── gramn │ ├── model.0.0.relevance.txt.arch.json │ ├── model.0.0.relevance.txt.hdf5 │ ├── model.3cl.w19.f16-32-64.k16.l96.3.0.txt.arch.json │ ├── model.3cl.w19.f16-32-64.k16.l96.3.0.txt.hdf5 │ ├── model.3cl.w19.f16-32-64.k16.l96.3.1.txt.arch.json │ ├── model.3cl.w19.f16-32-64.k16.l96.3.1.txt.hdf5 │ ├── model.3cl.w19.f16-32-64.k16.l96.3.2.txt.arch.json │ ├── model.3cl.w19.f16-32-64.k16.l96.3.2.txt.hdf5 │ ├── model.3cl.w19.f16-32-64.k16.l96.3.3.txt.arch.json │ ├── model.3cl.w19.f16-32-64.k16.l96.3.3.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k128.l96.4.0.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k128.l96.4.0.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k128.l96.4.1.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k128.l96.4.1.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k128.l96.4.2.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k128.l96.4.2.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k128.l96.4.3.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k128.l96.4.3.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.0.0.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.0.0.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.0.1.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.0.1.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.0.2.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.0.2.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.0.3.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.0.3.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.1.0.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.1.0.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.1.1.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.1.1.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.1.2.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.1.2.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.1.3.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.1.3.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.2.0.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.2.0.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.2.1.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.2.1.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.2.2.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.2.2.txt.hdf5 │ ├── model.3cl.w19.f32-64-128.k16.l96.2.3.txt.arch.json │ ├── model.3cl.w19.f32-64-128.k16.l96.2.3.txt.hdf5 │ ├── model.4.0.relevance.txt.arch.json │ ├── model.4.0.relevance.txt.hdf5 │ ├── model.4.1.relevance.txt.arch.json │ ├── model.4.1.relevance.txt.hdf5 │ ├── model.4.2.relevance.txt.arch.json │ ├── model.4.2.relevance.txt.hdf5 │ ├── model.4.3.relevance.txt.arch.json │ └── model.4.3.relevance.txt.hdf5 │ └── gramp │ ├── model.0.0.relevance.txt.arch.json │ ├── model.0.0.relevance.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.1.0.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.1.0.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.1.1.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.1.1.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.1.2.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.1.2.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.1.3.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.1.3.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.2.0.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.2.0.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.2.1.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.2.1.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.2.2.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.2.2.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.2.3.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.2.3.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.3.0.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.3.0.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.3.1.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.3.1.txt.hdf5 │ ├── model.3cl.w13.f16-32-64.k16.l96.3.2.txt.arch.json │ ├── model.3cl.w13.f16-32-64.k16.l96.3.2.txt.hdf5 │ ├── 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