├── .gitignore ├── .travis.yml ├── LICENSE.md ├── Makefile ├── README.md ├── README.rst ├── bookwormDB ├── CreateDatabase.py ├── MetaParser.py ├── SQLAPI.py ├── __init__.py ├── benchmark.md ├── bin │ ├── dbbindings-flask.py │ ├── dbbindings.py │ └── logParser.py ├── bwExceptions.py ├── configuration.py ├── convertTSVtoJSONarray.py ├── countManager.py ├── general_API.py ├── json_schema.py ├── manager.py ├── mariaDB.py ├── multiprocessingHelp.py ├── schema_primitives.py ├── scripts │ ├── fast_featurecounter.sh │ └── mergecounted.awk ├── search_limits.py ├── sqliteKV.py ├── tokenizer.py ├── variableSet.py └── wsgi.py ├── demos ├── .ipynb_checkpoints │ ├── Reading Binary data-checkpoint.ipynb │ └── Untitled-checkpoint.ipynb └── Untitled.ipynb ├── setup.cfg ├── setup.py └── tests ├── setup.py ├── test_API.py ├── test_bookworm_files ├── field_descriptions.json ├── input.txt ├── jsoncatalog.txt └── test_bookworm_metadata.tsv ├── test_bookworm_files_unicode ├── field_descriptions.json ├── 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