├── .gitignore ├── LICENSE ├── README.md ├── bin └── camitaxonomy.py ├── checkm.nf ├── db └── README.md ├── init.nf ├── main.nf ├── nextflow.config ├── requirements.txt └── workflow.png /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CAMI-challenge/CAMITAX/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CAMI-challenge/CAMITAX/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CAMI-challenge/CAMITAX/HEAD/README.md -------------------------------------------------------------------------------- /bin/camitaxonomy.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CAMI-challenge/CAMITAX/HEAD/bin/camitaxonomy.py -------------------------------------------------------------------------------- /checkm.nf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CAMI-challenge/CAMITAX/HEAD/checkm.nf -------------------------------------------------------------------------------- /db/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CAMI-challenge/CAMITAX/HEAD/db/README.md -------------------------------------------------------------------------------- /init.nf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CAMI-challenge/CAMITAX/HEAD/init.nf -------------------------------------------------------------------------------- /main.nf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CAMI-challenge/CAMITAX/HEAD/main.nf -------------------------------------------------------------------------------- /nextflow.config: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CAMI-challenge/CAMITAX/HEAD/nextflow.config -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CAMI-challenge/CAMITAX/HEAD/requirements.txt -------------------------------------------------------------------------------- /workflow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CAMI-challenge/CAMITAX/HEAD/workflow.png --------------------------------------------------------------------------------