├── .gitattributes ├── .gitignore ├── BrainMaGe ├── .gitattributes ├── __init__.py ├── config │ ├── test_params_ma.cfg │ ├── test_params_multi_4.cfg │ └── train_params.cfg ├── models │ ├── __init__.py │ ├── networks.py │ └── seg_modules.py ├── tester │ ├── __init__.py │ ├── test_ma.py │ ├── test_ma_multi.py │ ├── test_multi_4.py │ ├── test_single_multi_4.py │ └── test_single_run.py ├── trainer │ ├── __init__.py │ ├── lightning_networks.py │ └── trainer_main.py ├── utils │ ├── __init__.py │ ├── convert_ckpt_to_pt.py │ ├── csv_creator_adv.py │ ├── cyclicLR.py │ ├── data.py │ ├── general_utils.py │ ├── intensity_standardize.py │ ├── losses.py │ ├── optimizers.py │ ├── preprocess.py │ └── utils_test.py └── weights │ ├── __init__.py │ ├── resunet_ma.pt │ └── resunet_multi_4.pt ├── Dockerfile ├── LICENSE ├── MANIFEST.in ├── README.md ├── brain_mage_intensity_standardize ├── brain_mage_run ├── brain_mage_single_run ├── brain_mage_single_run_multi_4 ├── openvino ├── README.md ├── benchmark-ov-corescaling.py ├── benchmark-pt-ov-memprofile.py ├── benchmark-pt-ov.py ├── compare-pyt-ov-single-infer.ipynb ├── compare_utils.py ├── core_scale_infer.sh ├── download-NFBS_Dataset.sh ├── export-to-ov.py ├── generate-csv-nfbs-dataset.py └── quantize.py ├── requirements.yml ├── setup.cfg └── setup.py /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CBICA/BrainMaGe/HEAD/.gitattributes -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CBICA/BrainMaGe/HEAD/.gitignore -------------------------------------------------------------------------------- /BrainMaGe/.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CBICA/BrainMaGe/HEAD/BrainMaGe/.gitattributes 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