├── .devcontainer ├── devcontainer.json ├── post-create.sh └── terminal-welcome.txt ├── .gitattributes ├── .github ├── actions │ └── setup-env │ │ └── action.yml ├── dependabot.yaml └── workflows │ ├── bench-compare.yaml │ ├── check-test.yaml │ ├── docs.yml │ ├── release-plz-pr.yaml │ ├── release-plz-release.yaml │ └── semantic-pr.yaml ├── .gitignore ├── .markdownlint.yaml ├── .markdownlintignore ├── .pre-commit-config.yaml ├── .prettierrc.yml ├── .rustfmt.toml ├── CHANGELOG.md ├── Cargo.toml ├── DISCLAIMER.md ├── Dockerfile ├── LICENSE ├── README.md ├── clippy.toml ├── criterion.toml ├── docs ├── CONTRIBUTING.md └── book │ ├── .gitignore │ ├── Readme.md │ ├── book.toml │ ├── models │ ├── basic │ └── disease_model │ │ ├── .gitignore │ │ ├── Cargo.toml │ │ └── src │ │ ├── incidence_report.rs │ │ ├── infection_manager.rs │ │ ├── main.rs │ │ ├── people.rs │ │ └── transmission_manager.rs │ └── src │ ├── SUMMARY.md │ ├── appendix_rust │ ├── appendix-rust.md │ ├── python-vs-rust.md │ └── rust-resources.md │ ├── assets │ ├── AnAgentBasedModel.svg │ ├── aggregate-sir-report.svg │ ├── diagrams │ │ ├── How Indexes And Queries Are Created And Stored.svg │ │ ├── How Ixa Is Extended.svg │ │ ├── How PersonProperties Are Stored.svg │ │ ├── diagrams.excalidraw │ │ ├── get_person_property.excalidraw │ │ └── library.excalidrawlib │ ├── flamegraph.svg │ ├── rng1.png │ └── rng2.gif │ ├── cli-usage.md │ ├── first_model │ ├── infection.md │ ├── next-steps.md │ ├── people.md │ ├── reporter.md │ ├── setup.md │ ├── transmission.md │ └── your-first-model.md │ ├── get-started.md │ ├── introduction.md │ └── topics │ ├── indexing.md │ ├── performance.md │ ├── random-module.md │ ├── reports.md │ └── topics.md ├── examples ├── basic-infection │ ├── Cargo.toml │ ├── README.md │ ├── events.png │ ├── infection-diagram.png │ ├── main.rs │ ├── output │ │ └── .gitkeep │ ├── plot_output.R │ └── src │ │ ├── incidence_report.rs │ │ ├── infection_manager.rs │ │ ├── lib.rs │ │ ├── people.rs │ │ └── transmission_manager.rs ├── basic │ └── main.rs ├── births-deaths │ ├── Cargo.toml │ ├── README.md │ ├── input.json │ ├── main.rs │ ├── output │ │ └── .gitkeep │ ├── plot_output.R │ └── src │ │ ├── demographics_report.rs │ │ ├── incidence_report.rs │ │ ├── infection_manager.rs │ │ ├── lib.rs │ │ ├── parameters_loader.rs │ │ ├── population_manager.rs │ │ └── transmission_manager.rs ├── load-people │ ├── README.md │ ├── logger.rs │ ├── main.rs │ ├── output │ │ └── .gitkeep │ ├── people.csv │ ├── population_loader.rs │ ├── sir.rs │ └── vaccine.rs ├── network-hhmodel │ ├── Age5to17Edges.csv │ ├── AgeUnder5Edges.csv │ ├── Households.csv │ ├── README.md │ ├── config.json │ ├── incidence_report.rs │ ├── loader.rs │ ├── main.rs │ ├── network.rs │ ├── output │ │ └── .gitkeep │ ├── parameters.rs │ └── seir.rs ├── parameter-loading │ ├── README.md │ ├── incidence_report.rs │ ├── infection_manager.rs │ ├── input.json │ ├── input.toml │ ├── main.rs │ ├── output │ │ └── .gitkeep │ ├── parameters_loader.rs │ ├── plot_output.R │ └── transmission_manager.rs ├── random │ ├── README.md │ └── main.rs ├── reports-multi-threaded │ ├── README.md │ ├── main.rs │ └── output │ │ └── .gitkeep ├── reports │ ├── README.md │ ├── main.rs │ └── output │ │ └── .gitkeep ├── runner │ └── main.rs └── time-varying-infection │ ├── README.md │ ├── exposure_manager.rs │ ├── incidence_report.rs │ ├── infection_manager.rs │ ├── input.json │ ├── main.rs │ ├── output │ └── .gitkeep │ ├── parameters_loader.rs │ ├── plot_output.R │ └── population_loader.rs ├── integration-tests ├── ixa-runner-tests │ ├── Cargo.toml │ ├── bin │ │ ├── runner_test_custom_args.rs │ │ └── runner_test_debug.rs │ ├── src │ │ └── lib.rs │ └── tests │ │ ├── debugger.rs │ │ ├── log.rs │ │ ├── macros.rs │ │ ├── progress_bar.rs │ │ └── runner.rs └── ixa-wasm-tests │ ├── .gitignore │ ├── Cargo.toml │ ├── README.md │ ├── index.html │ ├── package-lock.json │ ├── package.json │ ├── playwright.config.ts │ ├── pnpm-lock.yaml │ ├── src │ ├── infection_manager.rs │ ├── lib.rs │ ├── people.rs │ └── transmission_manager.rs │ └── tests │ └── run-model.test.js ├── ixa-bench ├── Cargo.toml ├── README.md ├── criterion │ ├── algorithm_benches.rs │ ├── counts.rs │ ├── examples.rs │ ├── index_benches.rs │ ├── large_dataset.rs │ └── sample_people.rs └── src │ ├── bench_utils │ ├── hyperfine.rs │ ├── macros.rs │ ├── mod.rs │ ├── registry.rs │ └── runner.rs │ ├── check_criterion_regressions.rs │ ├── generate_population.rs │ ├── lib.rs │ └── reference_sir │ ├── bench.rs │ ├── mod.rs │ ├── parameters.rs │ ├── periodic_counts.rs │ ├── sir_baseline.rs │ ├── sir_ixa.rs │ └── stats.rs ├── ixa-derive ├── CHANGELOG.md ├── Cargo.toml └── src │ ├── lib.rs │ ├── reorder_fn.rs │ ├── sorted_tag.rs │ └── utilities.rs ├── ixa-fips ├── CHANGELOG.md ├── Cargo.toml ├── README.md └── src │ ├── errors.rs │ ├── fips_code.rs │ ├── lib.rs │ ├── parser.rs │ └── states.rs ├── justfile ├── mise.toml ├── release-plz.toml ├── scripts ├── ixa_setup.sh ├── setup_new_ixa_project.sh └── template │ └── .github │ └── workflows │ ├── build-test.yaml │ └── pre-commit.yaml ├── src ├── context.rs ├── data_plugin.rs ├── debugger-commands.md ├── debugger.rs ├── error.rs ├── execution_stats.rs ├── external_api.rs ├── global_properties.rs ├── hashing.rs ├── lib.rs ├── log │ ├── mod.rs │ ├── null_logger.rs │ ├── progress_bar_encoder.rs │ ├── standard_logger.rs │ └── wasm_logger.rs ├── macros.rs ├── network.rs ├── numeric.rs ├── people │ ├── context_extension.rs │ ├── data.rs │ ├── event.rs │ ├── external_api.rs │ ├── index.rs │ ├── macros.rs │ ├── methods.rs │ ├── mod.rs │ ├── multi_property.rs │ ├── property.rs │ └── query.rs ├── plan.rs ├── plugin_context.rs ├── prelude.rs ├── profiling │ ├── computed_statistic.rs │ ├── data.rs │ ├── display.rs │ ├── file.rs │ └── mod.rs ├── progress.rs ├── random │ ├── context_ext.rs │ ├── macros.rs │ ├── mod.rs │ └── sampling_algorithms.rs ├── report.rs ├── runner.rs ├── tabulator.rs └── web_api.rs ├── static ├── favicon.ico ├── index.html ├── ixa.png ├── src │ ├── App.js │ ├── PeopleCharts.js │ ├── api.js │ ├── app-state.js │ └── main.js └── style.css ├── tests └── data │ ├── global_properties_invalid.json │ ├── global_properties_malformed.json │ ├── global_properties_missing.json │ ├── global_properties_runner.json │ ├── global_properties_test1.json │ └── global_properties_valid.json └── website ├── index.html ├── ixa_logo.png └── ixa_logo.svg /.devcontainer/devcontainer.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.devcontainer/devcontainer.json -------------------------------------------------------------------------------- /.devcontainer/post-create.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.devcontainer/post-create.sh -------------------------------------------------------------------------------- /.devcontainer/terminal-welcome.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.devcontainer/terminal-welcome.txt -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.gitattributes -------------------------------------------------------------------------------- /.github/actions/setup-env/action.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.github/actions/setup-env/action.yml -------------------------------------------------------------------------------- /.github/dependabot.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.github/dependabot.yaml -------------------------------------------------------------------------------- /.github/workflows/bench-compare.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.github/workflows/bench-compare.yaml -------------------------------------------------------------------------------- /.github/workflows/check-test.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.github/workflows/check-test.yaml -------------------------------------------------------------------------------- /.github/workflows/docs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.github/workflows/docs.yml -------------------------------------------------------------------------------- /.github/workflows/release-plz-pr.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.github/workflows/release-plz-pr.yaml -------------------------------------------------------------------------------- /.github/workflows/release-plz-release.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.github/workflows/release-plz-release.yaml -------------------------------------------------------------------------------- /.github/workflows/semantic-pr.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.github/workflows/semantic-pr.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.gitignore -------------------------------------------------------------------------------- /.markdownlint.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.markdownlint.yaml -------------------------------------------------------------------------------- /.markdownlintignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.markdownlintignore -------------------------------------------------------------------------------- /.pre-commit-config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.pre-commit-config.yaml -------------------------------------------------------------------------------- /.prettierrc.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.prettierrc.yml -------------------------------------------------------------------------------- /.rustfmt.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/.rustfmt.toml -------------------------------------------------------------------------------- /CHANGELOG.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/CHANGELOG.md -------------------------------------------------------------------------------- /Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/Cargo.toml -------------------------------------------------------------------------------- /DISCLAIMER.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/DISCLAIMER.md -------------------------------------------------------------------------------- /Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/Dockerfile -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/README.md -------------------------------------------------------------------------------- /clippy.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/clippy.toml -------------------------------------------------------------------------------- /criterion.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/criterion.toml -------------------------------------------------------------------------------- /docs/CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/CONTRIBUTING.md -------------------------------------------------------------------------------- /docs/book/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/.gitignore -------------------------------------------------------------------------------- /docs/book/Readme.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/Readme.md -------------------------------------------------------------------------------- /docs/book/book.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/book.toml -------------------------------------------------------------------------------- /docs/book/models/basic: -------------------------------------------------------------------------------- 1 | ../../../examples/basic -------------------------------------------------------------------------------- /docs/book/models/disease_model/.gitignore: -------------------------------------------------------------------------------- 1 | .vscode 2 | .idea 3 | 4 | /target 5 | Cargo.lock 6 | -------------------------------------------------------------------------------- /docs/book/models/disease_model/Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/models/disease_model/Cargo.toml -------------------------------------------------------------------------------- /docs/book/models/disease_model/src/incidence_report.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/models/disease_model/src/incidence_report.rs -------------------------------------------------------------------------------- /docs/book/models/disease_model/src/infection_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/models/disease_model/src/infection_manager.rs -------------------------------------------------------------------------------- /docs/book/models/disease_model/src/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/models/disease_model/src/main.rs -------------------------------------------------------------------------------- /docs/book/models/disease_model/src/people.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/models/disease_model/src/people.rs -------------------------------------------------------------------------------- /docs/book/models/disease_model/src/transmission_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/models/disease_model/src/transmission_manager.rs -------------------------------------------------------------------------------- /docs/book/src/SUMMARY.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/SUMMARY.md -------------------------------------------------------------------------------- /docs/book/src/appendix_rust/appendix-rust.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/appendix_rust/appendix-rust.md -------------------------------------------------------------------------------- /docs/book/src/appendix_rust/python-vs-rust.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/appendix_rust/python-vs-rust.md -------------------------------------------------------------------------------- /docs/book/src/appendix_rust/rust-resources.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/appendix_rust/rust-resources.md -------------------------------------------------------------------------------- /docs/book/src/assets/AnAgentBasedModel.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/assets/AnAgentBasedModel.svg -------------------------------------------------------------------------------- /docs/book/src/assets/aggregate-sir-report.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/assets/aggregate-sir-report.svg -------------------------------------------------------------------------------- /docs/book/src/assets/diagrams/How Indexes And Queries Are Created And Stored.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/assets/diagrams/How Indexes And Queries Are Created And Stored.svg -------------------------------------------------------------------------------- /docs/book/src/assets/diagrams/How Ixa Is Extended.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/assets/diagrams/How Ixa Is Extended.svg -------------------------------------------------------------------------------- /docs/book/src/assets/diagrams/How PersonProperties Are Stored.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/assets/diagrams/How PersonProperties Are Stored.svg -------------------------------------------------------------------------------- /docs/book/src/assets/diagrams/diagrams.excalidraw: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/assets/diagrams/diagrams.excalidraw -------------------------------------------------------------------------------- /docs/book/src/assets/diagrams/get_person_property.excalidraw: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/assets/diagrams/get_person_property.excalidraw -------------------------------------------------------------------------------- /docs/book/src/assets/diagrams/library.excalidrawlib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/assets/diagrams/library.excalidrawlib -------------------------------------------------------------------------------- /docs/book/src/assets/flamegraph.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/assets/flamegraph.svg -------------------------------------------------------------------------------- /docs/book/src/assets/rng1.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/assets/rng1.png -------------------------------------------------------------------------------- /docs/book/src/assets/rng2.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/assets/rng2.gif -------------------------------------------------------------------------------- /docs/book/src/cli-usage.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/cli-usage.md -------------------------------------------------------------------------------- /docs/book/src/first_model/infection.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/first_model/infection.md -------------------------------------------------------------------------------- /docs/book/src/first_model/next-steps.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/first_model/next-steps.md -------------------------------------------------------------------------------- /docs/book/src/first_model/people.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/first_model/people.md -------------------------------------------------------------------------------- /docs/book/src/first_model/reporter.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/first_model/reporter.md -------------------------------------------------------------------------------- /docs/book/src/first_model/setup.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/first_model/setup.md -------------------------------------------------------------------------------- /docs/book/src/first_model/transmission.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/first_model/transmission.md -------------------------------------------------------------------------------- /docs/book/src/first_model/your-first-model.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/first_model/your-first-model.md -------------------------------------------------------------------------------- /docs/book/src/get-started.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/get-started.md -------------------------------------------------------------------------------- /docs/book/src/introduction.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/introduction.md -------------------------------------------------------------------------------- /docs/book/src/topics/indexing.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/topics/indexing.md -------------------------------------------------------------------------------- /docs/book/src/topics/performance.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/topics/performance.md -------------------------------------------------------------------------------- /docs/book/src/topics/random-module.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/topics/random-module.md -------------------------------------------------------------------------------- /docs/book/src/topics/reports.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/topics/reports.md -------------------------------------------------------------------------------- /docs/book/src/topics/topics.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/docs/book/src/topics/topics.md -------------------------------------------------------------------------------- /examples/basic-infection/Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic-infection/Cargo.toml -------------------------------------------------------------------------------- /examples/basic-infection/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic-infection/README.md -------------------------------------------------------------------------------- /examples/basic-infection/events.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic-infection/events.png -------------------------------------------------------------------------------- /examples/basic-infection/infection-diagram.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic-infection/infection-diagram.png -------------------------------------------------------------------------------- /examples/basic-infection/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic-infection/main.rs -------------------------------------------------------------------------------- /examples/basic-infection/output/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/basic-infection/plot_output.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic-infection/plot_output.R -------------------------------------------------------------------------------- /examples/basic-infection/src/incidence_report.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic-infection/src/incidence_report.rs -------------------------------------------------------------------------------- /examples/basic-infection/src/infection_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic-infection/src/infection_manager.rs -------------------------------------------------------------------------------- /examples/basic-infection/src/lib.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic-infection/src/lib.rs -------------------------------------------------------------------------------- /examples/basic-infection/src/people.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic-infection/src/people.rs -------------------------------------------------------------------------------- /examples/basic-infection/src/transmission_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic-infection/src/transmission_manager.rs -------------------------------------------------------------------------------- /examples/basic/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/basic/main.rs -------------------------------------------------------------------------------- /examples/births-deaths/Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/Cargo.toml -------------------------------------------------------------------------------- /examples/births-deaths/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/README.md -------------------------------------------------------------------------------- /examples/births-deaths/input.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/input.json -------------------------------------------------------------------------------- /examples/births-deaths/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/main.rs -------------------------------------------------------------------------------- /examples/births-deaths/output/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/births-deaths/plot_output.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/plot_output.R -------------------------------------------------------------------------------- /examples/births-deaths/src/demographics_report.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/src/demographics_report.rs -------------------------------------------------------------------------------- /examples/births-deaths/src/incidence_report.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/src/incidence_report.rs -------------------------------------------------------------------------------- /examples/births-deaths/src/infection_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/src/infection_manager.rs -------------------------------------------------------------------------------- /examples/births-deaths/src/lib.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/src/lib.rs -------------------------------------------------------------------------------- /examples/births-deaths/src/parameters_loader.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/src/parameters_loader.rs -------------------------------------------------------------------------------- /examples/births-deaths/src/population_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/src/population_manager.rs -------------------------------------------------------------------------------- /examples/births-deaths/src/transmission_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/births-deaths/src/transmission_manager.rs -------------------------------------------------------------------------------- /examples/load-people/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/load-people/README.md -------------------------------------------------------------------------------- /examples/load-people/logger.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/load-people/logger.rs -------------------------------------------------------------------------------- /examples/load-people/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/load-people/main.rs -------------------------------------------------------------------------------- /examples/load-people/output/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/load-people/people.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/load-people/people.csv -------------------------------------------------------------------------------- /examples/load-people/population_loader.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/load-people/population_loader.rs -------------------------------------------------------------------------------- /examples/load-people/sir.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/load-people/sir.rs -------------------------------------------------------------------------------- /examples/load-people/vaccine.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/load-people/vaccine.rs -------------------------------------------------------------------------------- /examples/network-hhmodel/Age5to17Edges.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/network-hhmodel/Age5to17Edges.csv -------------------------------------------------------------------------------- /examples/network-hhmodel/AgeUnder5Edges.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/network-hhmodel/AgeUnder5Edges.csv -------------------------------------------------------------------------------- /examples/network-hhmodel/Households.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/network-hhmodel/Households.csv -------------------------------------------------------------------------------- /examples/network-hhmodel/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/network-hhmodel/README.md -------------------------------------------------------------------------------- /examples/network-hhmodel/config.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/network-hhmodel/config.json -------------------------------------------------------------------------------- /examples/network-hhmodel/incidence_report.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/network-hhmodel/incidence_report.rs -------------------------------------------------------------------------------- /examples/network-hhmodel/loader.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/network-hhmodel/loader.rs -------------------------------------------------------------------------------- /examples/network-hhmodel/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/network-hhmodel/main.rs -------------------------------------------------------------------------------- /examples/network-hhmodel/network.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/network-hhmodel/network.rs -------------------------------------------------------------------------------- /examples/network-hhmodel/output/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/network-hhmodel/parameters.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/network-hhmodel/parameters.rs -------------------------------------------------------------------------------- /examples/network-hhmodel/seir.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/network-hhmodel/seir.rs -------------------------------------------------------------------------------- /examples/parameter-loading/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/parameter-loading/README.md -------------------------------------------------------------------------------- /examples/parameter-loading/incidence_report.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/parameter-loading/incidence_report.rs -------------------------------------------------------------------------------- /examples/parameter-loading/infection_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/parameter-loading/infection_manager.rs -------------------------------------------------------------------------------- /examples/parameter-loading/input.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/parameter-loading/input.json -------------------------------------------------------------------------------- /examples/parameter-loading/input.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/parameter-loading/input.toml -------------------------------------------------------------------------------- /examples/parameter-loading/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/parameter-loading/main.rs -------------------------------------------------------------------------------- /examples/parameter-loading/output/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/parameter-loading/parameters_loader.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/parameter-loading/parameters_loader.rs -------------------------------------------------------------------------------- /examples/parameter-loading/plot_output.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/parameter-loading/plot_output.R -------------------------------------------------------------------------------- /examples/parameter-loading/transmission_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/parameter-loading/transmission_manager.rs -------------------------------------------------------------------------------- /examples/random/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/random/README.md -------------------------------------------------------------------------------- /examples/random/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/random/main.rs -------------------------------------------------------------------------------- /examples/reports-multi-threaded/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/reports-multi-threaded/README.md -------------------------------------------------------------------------------- /examples/reports-multi-threaded/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/reports-multi-threaded/main.rs -------------------------------------------------------------------------------- /examples/reports-multi-threaded/output/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/reports/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/reports/README.md -------------------------------------------------------------------------------- /examples/reports/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/reports/main.rs -------------------------------------------------------------------------------- /examples/reports/output/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/runner/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/runner/main.rs -------------------------------------------------------------------------------- /examples/time-varying-infection/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/time-varying-infection/README.md -------------------------------------------------------------------------------- /examples/time-varying-infection/exposure_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/time-varying-infection/exposure_manager.rs -------------------------------------------------------------------------------- /examples/time-varying-infection/incidence_report.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/time-varying-infection/incidence_report.rs -------------------------------------------------------------------------------- /examples/time-varying-infection/infection_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/time-varying-infection/infection_manager.rs -------------------------------------------------------------------------------- /examples/time-varying-infection/input.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/time-varying-infection/input.json -------------------------------------------------------------------------------- /examples/time-varying-infection/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/time-varying-infection/main.rs -------------------------------------------------------------------------------- /examples/time-varying-infection/output/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /examples/time-varying-infection/parameters_loader.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/time-varying-infection/parameters_loader.rs -------------------------------------------------------------------------------- /examples/time-varying-infection/plot_output.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/time-varying-infection/plot_output.R -------------------------------------------------------------------------------- /examples/time-varying-infection/population_loader.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/examples/time-varying-infection/population_loader.rs -------------------------------------------------------------------------------- /integration-tests/ixa-runner-tests/Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-runner-tests/Cargo.toml -------------------------------------------------------------------------------- /integration-tests/ixa-runner-tests/bin/runner_test_custom_args.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-runner-tests/bin/runner_test_custom_args.rs -------------------------------------------------------------------------------- /integration-tests/ixa-runner-tests/bin/runner_test_debug.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-runner-tests/bin/runner_test_debug.rs -------------------------------------------------------------------------------- /integration-tests/ixa-runner-tests/src/lib.rs: -------------------------------------------------------------------------------- 1 | // nothing here, keep it empty 2 | -------------------------------------------------------------------------------- /integration-tests/ixa-runner-tests/tests/debugger.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-runner-tests/tests/debugger.rs -------------------------------------------------------------------------------- /integration-tests/ixa-runner-tests/tests/log.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-runner-tests/tests/log.rs -------------------------------------------------------------------------------- /integration-tests/ixa-runner-tests/tests/macros.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-runner-tests/tests/macros.rs -------------------------------------------------------------------------------- /integration-tests/ixa-runner-tests/tests/progress_bar.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-runner-tests/tests/progress_bar.rs -------------------------------------------------------------------------------- /integration-tests/ixa-runner-tests/tests/runner.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-runner-tests/tests/runner.rs -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/.gitignore -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/Cargo.toml -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/README.md -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/index.html -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/package-lock.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/package-lock.json -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/package.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/package.json -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/playwright.config.ts: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/playwright.config.ts -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/pnpm-lock.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/pnpm-lock.yaml -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/src/infection_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/src/infection_manager.rs -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/src/lib.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/src/lib.rs -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/src/people.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/src/people.rs -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/src/transmission_manager.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/src/transmission_manager.rs -------------------------------------------------------------------------------- /integration-tests/ixa-wasm-tests/tests/run-model.test.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/integration-tests/ixa-wasm-tests/tests/run-model.test.js -------------------------------------------------------------------------------- /ixa-bench/Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/Cargo.toml -------------------------------------------------------------------------------- /ixa-bench/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/README.md -------------------------------------------------------------------------------- /ixa-bench/criterion/algorithm_benches.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/criterion/algorithm_benches.rs -------------------------------------------------------------------------------- /ixa-bench/criterion/counts.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/criterion/counts.rs -------------------------------------------------------------------------------- /ixa-bench/criterion/examples.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/criterion/examples.rs -------------------------------------------------------------------------------- /ixa-bench/criterion/index_benches.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/criterion/index_benches.rs -------------------------------------------------------------------------------- /ixa-bench/criterion/large_dataset.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/criterion/large_dataset.rs -------------------------------------------------------------------------------- /ixa-bench/criterion/sample_people.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/criterion/sample_people.rs -------------------------------------------------------------------------------- /ixa-bench/src/bench_utils/hyperfine.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/bench_utils/hyperfine.rs -------------------------------------------------------------------------------- /ixa-bench/src/bench_utils/macros.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/bench_utils/macros.rs -------------------------------------------------------------------------------- /ixa-bench/src/bench_utils/mod.rs: -------------------------------------------------------------------------------- 1 | mod macros; 2 | pub mod registry; 3 | -------------------------------------------------------------------------------- /ixa-bench/src/bench_utils/registry.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/bench_utils/registry.rs -------------------------------------------------------------------------------- /ixa-bench/src/bench_utils/runner.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/bench_utils/runner.rs -------------------------------------------------------------------------------- /ixa-bench/src/check_criterion_regressions.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/check_criterion_regressions.rs -------------------------------------------------------------------------------- /ixa-bench/src/generate_population.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/generate_population.rs -------------------------------------------------------------------------------- /ixa-bench/src/lib.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/lib.rs -------------------------------------------------------------------------------- /ixa-bench/src/reference_sir/bench.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/reference_sir/bench.rs -------------------------------------------------------------------------------- /ixa-bench/src/reference_sir/mod.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/reference_sir/mod.rs -------------------------------------------------------------------------------- /ixa-bench/src/reference_sir/parameters.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/reference_sir/parameters.rs -------------------------------------------------------------------------------- /ixa-bench/src/reference_sir/periodic_counts.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/reference_sir/periodic_counts.rs -------------------------------------------------------------------------------- /ixa-bench/src/reference_sir/sir_baseline.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/reference_sir/sir_baseline.rs -------------------------------------------------------------------------------- /ixa-bench/src/reference_sir/sir_ixa.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/reference_sir/sir_ixa.rs -------------------------------------------------------------------------------- /ixa-bench/src/reference_sir/stats.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-bench/src/reference_sir/stats.rs -------------------------------------------------------------------------------- /ixa-derive/CHANGELOG.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-derive/CHANGELOG.md -------------------------------------------------------------------------------- /ixa-derive/Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-derive/Cargo.toml -------------------------------------------------------------------------------- /ixa-derive/src/lib.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-derive/src/lib.rs -------------------------------------------------------------------------------- /ixa-derive/src/reorder_fn.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-derive/src/reorder_fn.rs -------------------------------------------------------------------------------- /ixa-derive/src/sorted_tag.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-derive/src/sorted_tag.rs -------------------------------------------------------------------------------- /ixa-derive/src/utilities.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-derive/src/utilities.rs -------------------------------------------------------------------------------- /ixa-fips/CHANGELOG.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-fips/CHANGELOG.md -------------------------------------------------------------------------------- /ixa-fips/Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-fips/Cargo.toml -------------------------------------------------------------------------------- /ixa-fips/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-fips/README.md -------------------------------------------------------------------------------- /ixa-fips/src/errors.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-fips/src/errors.rs -------------------------------------------------------------------------------- /ixa-fips/src/fips_code.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-fips/src/fips_code.rs -------------------------------------------------------------------------------- /ixa-fips/src/lib.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-fips/src/lib.rs -------------------------------------------------------------------------------- /ixa-fips/src/parser.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-fips/src/parser.rs -------------------------------------------------------------------------------- /ixa-fips/src/states.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/ixa-fips/src/states.rs -------------------------------------------------------------------------------- /justfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/justfile -------------------------------------------------------------------------------- /mise.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/mise.toml -------------------------------------------------------------------------------- /release-plz.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/release-plz.toml -------------------------------------------------------------------------------- /scripts/ixa_setup.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/scripts/ixa_setup.sh -------------------------------------------------------------------------------- /scripts/setup_new_ixa_project.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/scripts/setup_new_ixa_project.sh -------------------------------------------------------------------------------- /scripts/template/.github/workflows/build-test.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/scripts/template/.github/workflows/build-test.yaml -------------------------------------------------------------------------------- /scripts/template/.github/workflows/pre-commit.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/scripts/template/.github/workflows/pre-commit.yaml -------------------------------------------------------------------------------- /src/context.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/context.rs -------------------------------------------------------------------------------- /src/data_plugin.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/data_plugin.rs -------------------------------------------------------------------------------- /src/debugger-commands.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/debugger-commands.md -------------------------------------------------------------------------------- /src/debugger.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/debugger.rs -------------------------------------------------------------------------------- /src/error.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/error.rs -------------------------------------------------------------------------------- /src/execution_stats.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/execution_stats.rs -------------------------------------------------------------------------------- /src/external_api.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/external_api.rs -------------------------------------------------------------------------------- /src/global_properties.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/global_properties.rs -------------------------------------------------------------------------------- /src/hashing.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/hashing.rs -------------------------------------------------------------------------------- /src/lib.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/lib.rs -------------------------------------------------------------------------------- /src/log/mod.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/log/mod.rs -------------------------------------------------------------------------------- /src/log/null_logger.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/log/null_logger.rs -------------------------------------------------------------------------------- /src/log/progress_bar_encoder.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/log/progress_bar_encoder.rs -------------------------------------------------------------------------------- /src/log/standard_logger.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/log/standard_logger.rs -------------------------------------------------------------------------------- /src/log/wasm_logger.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/log/wasm_logger.rs -------------------------------------------------------------------------------- /src/macros.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/macros.rs -------------------------------------------------------------------------------- /src/network.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/network.rs -------------------------------------------------------------------------------- /src/numeric.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/numeric.rs -------------------------------------------------------------------------------- /src/people/context_extension.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/people/context_extension.rs -------------------------------------------------------------------------------- /src/people/data.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/people/data.rs -------------------------------------------------------------------------------- /src/people/event.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/people/event.rs -------------------------------------------------------------------------------- /src/people/external_api.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/people/external_api.rs -------------------------------------------------------------------------------- /src/people/index.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/people/index.rs -------------------------------------------------------------------------------- /src/people/macros.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/people/macros.rs -------------------------------------------------------------------------------- /src/people/methods.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/people/methods.rs -------------------------------------------------------------------------------- /src/people/mod.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/people/mod.rs -------------------------------------------------------------------------------- /src/people/multi_property.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/people/multi_property.rs -------------------------------------------------------------------------------- /src/people/property.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/people/property.rs -------------------------------------------------------------------------------- /src/people/query.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/people/query.rs -------------------------------------------------------------------------------- /src/plan.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/plan.rs -------------------------------------------------------------------------------- /src/plugin_context.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/plugin_context.rs -------------------------------------------------------------------------------- /src/prelude.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/prelude.rs -------------------------------------------------------------------------------- /src/profiling/computed_statistic.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/profiling/computed_statistic.rs -------------------------------------------------------------------------------- /src/profiling/data.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/profiling/data.rs -------------------------------------------------------------------------------- /src/profiling/display.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/profiling/display.rs -------------------------------------------------------------------------------- /src/profiling/file.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/profiling/file.rs -------------------------------------------------------------------------------- /src/profiling/mod.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/profiling/mod.rs -------------------------------------------------------------------------------- /src/progress.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/progress.rs -------------------------------------------------------------------------------- /src/random/context_ext.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/random/context_ext.rs -------------------------------------------------------------------------------- /src/random/macros.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/random/macros.rs -------------------------------------------------------------------------------- /src/random/mod.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/random/mod.rs -------------------------------------------------------------------------------- /src/random/sampling_algorithms.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/random/sampling_algorithms.rs -------------------------------------------------------------------------------- /src/report.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/report.rs -------------------------------------------------------------------------------- /src/runner.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/runner.rs -------------------------------------------------------------------------------- /src/tabulator.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/tabulator.rs -------------------------------------------------------------------------------- /src/web_api.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/src/web_api.rs -------------------------------------------------------------------------------- /static/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/static/favicon.ico -------------------------------------------------------------------------------- /static/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/static/index.html -------------------------------------------------------------------------------- /static/ixa.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/static/ixa.png -------------------------------------------------------------------------------- /static/src/App.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/static/src/App.js -------------------------------------------------------------------------------- /static/src/PeopleCharts.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/static/src/PeopleCharts.js -------------------------------------------------------------------------------- /static/src/api.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/static/src/api.js -------------------------------------------------------------------------------- /static/src/app-state.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/static/src/app-state.js -------------------------------------------------------------------------------- /static/src/main.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/static/src/main.js -------------------------------------------------------------------------------- /static/style.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/static/style.css -------------------------------------------------------------------------------- /tests/data/global_properties_invalid.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/tests/data/global_properties_invalid.json -------------------------------------------------------------------------------- /tests/data/global_properties_malformed.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/tests/data/global_properties_malformed.json -------------------------------------------------------------------------------- /tests/data/global_properties_missing.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/tests/data/global_properties_missing.json -------------------------------------------------------------------------------- /tests/data/global_properties_runner.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/tests/data/global_properties_runner.json -------------------------------------------------------------------------------- /tests/data/global_properties_test1.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/tests/data/global_properties_test1.json -------------------------------------------------------------------------------- /tests/data/global_properties_valid.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/tests/data/global_properties_valid.json -------------------------------------------------------------------------------- /website/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/website/index.html -------------------------------------------------------------------------------- /website/ixa_logo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/website/ixa_logo.png -------------------------------------------------------------------------------- /website/ixa_logo.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/CDCgov/ixa/HEAD/website/ixa_logo.svg --------------------------------------------------------------------------------